Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------ANAC46                --------->TOE1(2)                              <---------ANAC58                  --------->GLK1(2)                    --------->ZAT6<---------ANAC58    --------->ARR11(3)                      <------                 <-----------GT1  <---------ANAC58    <---------ARR11(3)                     --------                --------->ICU4<---------ANAC46       --------->GLK1(1)     <---------YAB1--------->ATHB12 >YAB1     ----------->GT1    <---------ANAC58     --------->YAB1 --------->TOE2(2)     <---------YAB1   gacagagatagtaatgtaattaccactgagttgtttgtgtgtgtgtgtgtaaatgatatctaagagaacctgtgagtaagattgaagtttttcattgaga  3035000                                                                                                    -                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                -----                                                                                                <----                                    <---------ARR11(3)                                          ----- <---------ANAC58                   --------->ARR11(3)                                         <----- <---------ANAC46             <----------DOF2          <---------ANAC58                  <-----------GT1 <---------ANAC58          <---------ARR11(3)          <---------ANAC58              <---------AHL20(2) ---TOE2(3)             <---------DAG2*TSS       <-----------RAV1(1)                 --------->AHL20(2) ->YAB1                 <----------DOF2          <---------ZAT6           <---------ARR14(2)---------   atggagtgagaaggggaattgtcgagctttatctttaagaacttcatattagtgttgccttggtgatttttcagagtattttggagttttattaccagaa  3035100                                              ---------->DOF2                                         ----------->GT1                                        ----------->GT1                                      <---------ANAC46                                      <------MYB83                                      <---------ANAC58                                      <---------ANAC58 ----------->HVH21                    <------MYB46(1) -------->LBD16                       --------->ANAC55(2) --------ANAC55(2)                    <---------ANAC55(2) --------ANAC46                       <---------ANAC55(1)                              <-----------GT1 --------ANAC58                      --------->MYB59                                  --------->AHL20(2) --------->GT1                       --------->MYB111(1)                       --------->YAB1 --------ANAC58                      --------->MYB52(2)                  --------->ANAC55(1) ---------------------TaNAC69(2)     --------->MYB46(2)   --------->ZAT18--------->ANAC46 ---->ARR14(2)                       --------->MYB111(2)  <---------ZAT18--------->ANAC55(2) -----ARR14(2)                      <---------MYB55(1)    --------->ZAT14<---------ANAC55(2) ---->GLK1(2)     ---------->DOF2  <---------MYB52(1)     <---------ZAT14--------->ANAC58 ----GLK1(2) ----------->GT1     <---------YAB1--------->DAG2            --------->ANAC58    <------- >HSFB2a(2)<------ZmHOX2a(1)    --------->AHL20(1)    <---------------AtSPL8   <-----------GT1   tccgtgaaacagaggaagtttaaagagacacaaatatgttaggtgttaaaaagtcaagagtacacaaatatgtatacgtaataacaaattaacttctaat  3035200                                          --------->ARR11(3)                                          <---------ARR14(2)                                          --------->GLK1(2)                                          <---------ARR11(3)             --------->ANAC58             --------->ARR14(2)             --------->ANAC46            <---------GLK1(1)             --------->ANAC55(2)         --------->GLK1(1)             <---------ANAC55(2)  <------MYB83             --------->ANAC55(1)  <------MYB46(1)             --------->ANAC58    --------->MYB52(2)                                       --------->At5g28300           <-----------GT1       --------->MYB59                                         ----------->GT1        <---------AHL20(2)       --------->MYB111(1)                                --------->HSFC1(1)       <---------AHL20(2)        --------->MYB46(2)                                 <---------HSFB2a(2)   <---------AHL20(2)            <---------AtMYB61           <------------CBF       --------->HSFB2a(2)   --------->AHL20(2)           <---------MYB55(1)         <---------YAB1           <---------HSFC1(1) --YAB1--------->AHL20(2)      <---------MYB52(1)         ------------>CBF     ------->TEIL         -   tgtttttaattttatacgtaactaatttgattcgttaggtcgaatatctgtatagaaaactacaattgggctatagaaatgtatttctagaccgtaaatc  3035300              <---------ARR11(3)              <---------ARR14(2)                               <----------DOF2              --------->ARR14(2)                            --------------->AGL15        ------>ZmHOX2a(1)                                   <---------------AGL15     ---------->ID1                                  <---------TOE2(3) <---------ANAC58               ----------->GT1    ---------->DOF2<---------TOE2(3)             <---- <---------ANAC58          <---------DAG2      <---------YAB1------>ZmHOX2a(1)                  ----- <---------ANAC46          <----------DOF2 <---------DAG2  <-----------------AGL1    <-----------GT1 -------->MYB52(2)      <-----------GT1    <----------DOF2 <-----------------AG   <---------REM1(1)   gttccttgtcctacaagatttgttttttactttttagttaaatctctttttgataaaggtttcctctttaggtttttgtttttgttgtaactcttgttct  3035400                                <---------ZAT14                --------------------->WRI1                                --------->ZAT14              --------->SPL7                   -------                          <------MYB46(1)                   ------>ZmHOX2a(1)       ------>MYB46(1)                          <---------STY1(2)          <---------ARR14(2)             ------>MYB83          <-------TEIL    <------MYB83               --------->ARR14(2)           ------->GAMYB      <---------TOE2(3)  --------->MYB59             <---------GLK1(2)            --------->AtMYB61    ---------->DOF2   --------->ZAT2           ----------->HVH21        ---------->DOF2       <------ -----HSFB2a(2)       <---------ZAT2         <---------bZIP60(1)    <---------TOE1(2)      ------>ZmHOX2a(1) ---->HSFB2a(2)      --------->AGP1          --------->bZIP60(1)  <---------SPL7 --------->MYB46(3)   gcaagttaaaggttcatcactcagagctaggtagtactctgagtatgaagtcacagatactcctacgtcgaacgtatagcacaaccatccctcctcccac  3035500                                                        <----------DOF2                                                        <---------DAG2                                                      --------->HSFC1(2)                                                      <---------HSFC1(2)                   --------->LBD16                             --------->RAP2.6(3) --------->ANAC58                --------->WOX13(1)                            --------->ARR14(2)   --------->ANAC58         --------->ANAC58 --------->HSFB2a(2)                            <---------ARR14(2)  <---------LBD16           --------->ANAC58 ------>ZmHOX2a(1)                           <---------CCA1(2)  --------->ZAT2         ----------->HVH21     <---------HSFB2a(2)                       <-----------------AG   <---------ZAT2       --------->ANAC55(2)    <---------LBD16 ---->RAV1(1)          <-----------------AGL1------->TEIL       <-------TEIL   <---------ATHB12 ---ALFIN1        <---------CCA1(2)    <-------TEIL  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)----------->RAV1(2)   agcaaatgttagaatcactcatctctctcgtatcggcaagattcatgaagctcggaagcttttcgattcatgtgactcgaaatcaatctcttcctggaac  3035600                      <-----------ARR10                      <---------ARR14(2)                      <---------ARR11(1)                      ------->TEIL                      --------->GLK1(2)       <---------ANAC46       <---------ANAC58                                                                             <       <---------ANAC58                      <---------ARR14(2)                                <-----      --------->ZAT2  --------->ARR14(2)  --------->ANAC58                                     <-----      <---------ZAT2 <---------CCA1(2)    --------->ANAC58                                     <-----     --------->MYB111(2)                  --------->ANAC46                --------->YAB1       <-----     <---------MYB46(3)           --------->LBD16                  <<<<<<<GRF7                <------    <--------P     <---------ANAC58      ------->TEIL             --------->MYB52(1)          <------  <---------MYB46(3) <---------ARR14(1)  <---------LBD16         ----------->HVH21            ------- <---------YAB1<----------DOF2   --------->LBD16               <---------ANAC58               ------- <---------TOE2(3) <---------ANAC58    <-------TEIL            <---------ANAC58<---------CCA1(2)  <--   tctatggttgctgggtactttgcgaatctaatgccccgagatgcacggaaactgttcgatgaaatgcctgacagaaacatcatctcttggaatggtttgg  3035700      --------->ARR14(2)      <---------ARR14(2)  --------->LBD16                                                                           --------- <---------LBD16                                                                        <------MYB46(1) ---------LBD16                                                                         <------MYB83 ----ANAC58                                                                             <---------MYB46(3) ----ANAC58                           ---------->DOF2                                  <---------AtMYB61 -MYB83                              <------ZmHOX2a(1)                                 <---------DEAR3(1) -MYB46(1)                       --------->TOE1(2)                                   <-------GAMYB ---MYB46(3)                   ------->TEIL                                         <---------ANAC46 ---AtMYB61                <---------TOE2(3)                                        <---------DEAR3(1) -->MYB111(1)           <---------WOX13(1)                      <------ZmHOX2a(1)  <------NtERF2 -->MYB46(2)  <---------ARR14(2)<---------ZAT2     <---------AHL20(2)            <---------DEAR3(1) -------SPL7  --------->MYB52(1)--------->ZAT2    --------->AHL20(2)            <---------ORA47(1)   tgtccgggtatatgaagaacggggagattgacgaagctaggaaagtgtttgatttaatgcctgagaggaatgttgtctcatggacggcgttggtgaaagg  3035800                       --------->ALFIN1                 <--------P              <---------TOE1(3)              --------->DAG2                                                       <---------YAB1              <---------TOE2(3)                                                   <---------ANAC58              <---------AtMYB61   <---------MYB52(1)                <---------ANAC58   --------->ZAT18   <---------REM1(1)                              <---------ANAC58   <---------ZAT18   <-----------RAV1(1)<---------HSFB2a(2)         <---------ANAC46--------->ATHB12   --------->ZAT14   <---------bZIP60(2)--------->HSFB2a(2)   <---------TOE2(3)   <---------ANAC58   <---------ZAT14<-------TEIL  <---------MYB46(3)            <---------TOE1(3) --------->ICU4 ->DOF2   --------->YAB1    <------NtERF2                 --------->YAB1        <---------YAB1   <---   gtatgtgcacaatggtaaggttgatgtggcagagtcgttgttttggaaaatgcctgagaagaataaggtttcttggactgtgatgcttattgggtttttg  3035900  Previous    Next  AGI:  At1g09400.1    Description:  12-oxophytodienoate reductase, putative. Identical to Putative 12-oxophytodienoate reductase-like protein 1 [Arabidopsis Thaliana] (GB:Q8GYA3;GB:O80523); similar to OPR1 (12-oxophytodienoate reductase 1), 12-oxophytodienoate reductase [Arabidopsis thaliana] (TAIR:AT1G76680.1); similar to LEDI-5c protein [Lithospermum erythrorhizon] (GB:BAD06575.1); contains InterPro domain NADH:flavin oxidoreductase/NADH oxidase, N-terminal; (InterPro:IPR001155); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 3033514    to: 3035038    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g09410.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G56690.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17379.1); similar to hypothetical protein OsI_011004 [Oryza sativa (indica cultivar-group)] (GB:EAY89771.1); similar to pentatricopeptide, putative [Oryza sativa (japonica cultivar-group)] (GB:ABF95626.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 3035445    to: 3037562    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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