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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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               --------->AHL25(3)
              <---------AHL12(2)
              <---------AHL20(1)
              --------->AHL20(2)
              <---------AHL20(2)
              --------->AHL12(2)
              --------->AHL12(3)
              <---------AHL12(3)
              --------->AHL20(3)
              <---------AHL25(2)
              --------->AHL20(1)
              <---------AHL20(3)
             --------->YAB1
            <---------ATHB12
            <---------ATHB51
           --------->WOX13(2)
           <---------WOX13(2)
      ------>ZmHOX2a(2)
     <---------GLK1(1)
     <------ZmHOX2a(2)                                                           --------->ARR11(2)
     <---------KAN1                                                              <---------GATA12
     --------->GLK1(1)                                                    --------->YAB1
    <---------ARR14(2)                                                  <---------AHL20(3)
    <---------GATA12                                                    --------->AHL20(3)
    --------->GATA12                                                --------->TOE2(3)
    --------->ARR11(2)                                             <-------TEIL  <---------ARR11(2)
    --------->ARR14(2)                                            ====================HOX2a_HOX2a
    <---------ARR11(3)                                           --------->AGP1------>ZmHOX2a(1)
    <---------ARR11(2)                                           --------->GATA12--------->RVE1(2)
    --------->ARR11(3)                                           <---------ARR11(2)
 <---------TOE1(2)                                               --------->ARR11(3)
--------->LBD16<---------YAB1                                    <---------GATA12--------->GATA12
------>ZmHOX2a(1)                                                <---------ARR11(3)
---------LBD16--------->AHL25(2)                                 --------->ARR11(2)
-------->TOE1(2) --------->WOX13(2)                        <-------TEIL--------->YAB1----------->RAV1(1)
--------->RAV1(2)<---------WOX13(2)              --------->RVE1(2)<------ZmHOX2a(2)------>ZmHOX2a(2)
 
ttcctgggatctccaattataatttagaaatcaaaaaccccagacaaaccaaaatcaacaaattcatagatccataataatcctgatccaacatttgaga  2976400
                                  --------->ARR11(2)
                                  <---------ARR11(3)
                                  <---------GATA12
                                  <---------ARR14(2)
                                  <---------ARR11(2)
                                  ------->TEIL
                                  <---------AGP1
                                  --------->ARR14(2)
                                  --------->ARR11(3)
                                  <---------RVE1(2)
                                  --------->GATA12
                                 <---------CCA1(2)
                     <---------KAN1
                     --------->GLK1(1)
                     <---------GLK1(1)
                    --------->ARR14(2)
                    --------->ARR11(3)
                    <---------ARR11(2)
                    <---------ARR14(2)                                                    --------->ANAC58
                   ========================HOX2a_HOX2a                                ------>ZmHOX2a(2)
                   <------ZmHOX2a(1)------>ZmHOX2a(2)                               <---------GATA12
       --------->At4g35610   <---------AtLEC2              --------->TOE2(3)        --------->GATA12
       <---------At4g35610   <---------ANAC46      <---------KAN1      --------->WOX13(2) --------->ANAC46
   <-----------HVH21<---------ARR11(3)           --------->YAB1        <---------WOX13(2) --------->ANAC58
 
acaaactatcagatgaaaacgaggatatcgtagcatggatcttaaactcgtagcataaatcacattaaaactcaaattgaagaaatagatcgcaagccag  2976500
                                                                                                   -
                                                                                                   -
                                                                                                  <-
                                                                                                 <--
                                                                                           <------NtERF2
                                                                                           ---------
                                                                                         <---------DEAR3(1)
                                                                                         --------->ALFIN1
                                                                                         <---------ANAC46
                                                                                        --------->ATERF1(1)
                                                                                        <------NtERF2
                                                                                        ------>NtERF2
                                                                                        <---------LBD16
                                                                                       ------>NtERF2
                                                                                       <---------RAP2.3(1)
                                                                                       <---------RRTF1(1)
                                                                                      <---------RAP2.3(2)
                                                                                      <---------RRTF1(3)
                                                                                      <---------DEAR3(1)
                                                                                      <---------RRTF1(2)
                                                                                     <---------LBD16
                                                                                    <-----------RAV1(1)
                                                                         ===========================
                   <------ZmHOX2a(1)                                     ===========================
            <---------YAB5                                               ------>ZmHOX2a(1)<---------ATERF1(1)
        --------->ANAC58                   <---------REM1(1)             --------->LBD16<---------At4g35610
        --------->ANAC58          <---------ZAT6                         --------->HSFB2a(2)  <-----
        --------->ANAC46      <---------ZAT14                  ---------->DOF2   --------->MYB52(1)-
  --------->MYB52(1)          --------->ZAT14        --------->MYB59     <---------HSFB2a(2)<-------
 
aacacaaacagacgcatcatcaggaagatagagtatagagatagagatgtagaaattagataccatcaaagcgctcctcgaaaataactgcggcggaggc  2976600
                                                                                       <---------GATA12
                                                                                    --------->LBD16
                                                                                   --------->LBD16
                                                                                   --------->ANAC46
                                                                                  --------->LBD16
                                                                            --------->ZAT2
                                                                            --------->HSFC1(2)
                                                                            <---------HSFC1(2)
                                                                            <---------ZAT2
                                                                            --------->HSFB2a(1)
                                                                            <---------HSFB2a(1)
                                                                            --------->At4g35610
-------->ANAC58                                                             <---------At4g35610
----->ZmHOX2a(2)                         --------->YAB1                    <-----------ARR10
-----ZmHOX2a(2)                          <---------ICU4                 ------>ZmHOX2a(2)
-------GATA12                            <--------HAHB4                <------ZmHOX2a(2)      ------
>ATERF1(1)                              <---------YAB5                <---------ARR11(2)   <--------
======HOX2a_HOX2a           <---------TGA1a                           --------->ARR11(2)   ---------
=====HOX2a_HOX2a            --------->O2--------->ICU4                <---------GATA12 <---------ARR11(3)
-NtERF2                   --------->CCA1(2)    --------->ANAC46       <---------ARR14(2) <----------
-------->ANAC58    <---------KAN1    <------ZmHOX2a(1)                --------->GATA12 --------->GATA12
--DEAR3(1)    --------->YAB1<---------O2<---------ATHB12              --------->ARR14(2)<------ZmHOX2a(2)
 
gatcgcaacaagaccgataagaattagagagacgaggctaggaatcattttcgccattgctaaaaaaaactcagatcggagcttccccgagatcagatga  2976700
                                                                                     --------->bZIP60(2)
                                                      <---------At4g35610      <---------TOE2(3)
                                                    <---------ZAT18     --------->AHL20(2)
 --------------->AtSPL3                            *TSS                 --------->AHL25(3)
 --------->ARR11(3)                           --------->STY1(2)         --------->AHL25(2)
 <---------ARR11(3)                          --------->ANAC58           <---------AHL20(2)         -
 <---------------AtSPL8                      --------->ANAC58           <---------AHL25(1)         <
 --------->GATA12                         --------->ZAT2<----------DOF2 --------->AHL25(1)     <----
 <---------GATA12<---------At4g35610      --------->At4g35610           <---------AHL20(3)     -----
--->YAB5    <---------LBD16<---------At5g28300<---------STY1(2)         <---------AHL25(2)     -----
-At4g35610 ----------->RAV1(2)          <------ZmHOX2a(1)               --------->AHL20(3)     <----
>At4g35610--------->ARR11(3)          --------->ALFIN1--------->At4g35610  <---------YAB1 ----------
-RAV1(2)  <---------ARR11(3)       <------ZmHOX2a(1)--------->ZAT18  <---------RVE1(2)  <---------ANAC46
 
tgaagatgtacaagacctggagcttatatataccgcgaggagaggagctagcaagtgagctttgctctcatggattttattttaggctacgtcgtgtaaa  2976800
                                    --------->CCA1(2)
                                   --------->ARR14(2)
                                   --------->ARR11(2)
                                   <---------ARR14(2)
                                   <---------ARR11(2)
                                  --------->At4g35610
                              <-----------TGA1
                              <-----------HVH21
                             <---------O2
                             <---------TGA1a
                             --------->bZIP60(2)
                             --------->TGA1a
                             --------->O2
                             --------->ANAC55(1)
                             --------->ANAC58
                             --------->ANAC58
                        ----------->HVH21
                        --------->At1g77200
                        ------->GAMYB
                        --------->ANAC46
          <-----------------AGL1  <---------At4g35610
      --------->ANAC55(2)    --------->ANAC46
      <---------ANAC55(2)    --------->ANAC55(2)
      --------->ANAC46  ===============MYC_MYB
      --------->ANAC58 ================MYC_MYB
      --------->ANAC58 <------------AtMYB77
      --------->ANAC55(1)  <---------ALFIN1
      --------->O2     --------->MYB46(3)
  ------>NtERF2        --------->DEAR3(2)
-------->At4g35610   <---------ARR11(2)                  <---------bZIP60(2)
---------At4g35610   --------->MYB52(1)               <---------KAN1                            <---
-----ARR14(2)        --------->ARR11(2)       <------------CBF                             ---------
---->ARR14(2)     <---------ANAC55(2)       <---------YAB1                                --------->DOF5.7(1)
---->GATA12       --------->ANAC55(2)<-------TEIL <---------TOE2(3)                     ---------->DOF2
-----GATA12 ------------>CBF <---------ANAC55(2) --------->YAB1                 --------->DOF5.7(1)
->GT1 --------->bZIP60(2)<-----------HVH21  <---------YAB5                     --------->DOF5.7(1)
 
tctgcagccacgtaatccaataggtaaccgacacgtcagatacatttgtcattgagaatgacatgtcgttatagtattggataaaacgggagaaagaagg  2976900
                                                         ----------->GT1
                                        <---------RVE1(2)<---------ANAC46
                                        <---------ARR11(3)
                                        --------->ARR11(3)
                                    ---------->DOF2     <---------DEAR3(1)
                                ------->MYC3           <---------ZAT14
                                ------->MYC4        <------MYB46(1)
                                <-------MYC3        <---------MYB46(3)
                                ------->MYC2        <---------DEAR3(2)
                                <-------MYC2        <------MYB83
                                <-------MYC4       --------->ALFIN1
                               <---------ANAC55(2) <---------AtMYB61
                               ================bZIP_DOF<---------ABI4(1)
                               <---------O2        --------->MYB111(2)
                               --------->O2        --------->MYB111(1)
                               <--------ABF1       <---------MYB46(3)
                               --------->TGA1a     <---------DEAR3(1)
                               <---------TGA1a     --------->MYB55(2)
               --------->ANAC58==========================MYC_MYB
           --------->TOE2(3)   ============================MYC_MYB
     --------->WOX13(2)   ----------->HVH21       <---------MYB55(1)
     <---------WOX13(2) --------->CCA1(2)         <--------P
    <--------HAHB4     <---------GATA12 --------->AHL20(1)
    --------->YAB5     <---------ARR11(3)--------->KAN1--------->ZAT18
    --------->ATHB51   --------->ARR11(1)--------->CCA1(2)--------->At5g28300                <------
    <---------ICU4 ---------->DOF2--------->REM1(2)--------->MYB46(2)                   <---------ANAC46
   --------->ICU4  ======================bZIP_DOF<-------GAMYB                      <----------DOF2
------DEAR3(1) --------->ANAC58<---------ANAC46 <---------MYB46(3)              --------->ZAT18
>DOF5.7(1) --------->TOE1(3)   --------->ANAC55(2)<---------MYB52(1)            <---------ZAT18 <---
 
ctgtgcataattagccttaagcaaaagatttgacacgtgtaaagatattagcggttggtgcggtgatataaacaaaaaacaagtgtgcttctcgtggaga  2977000
                                                       <-------GAMYB
                    ------>ZmHOX2a(2)                 <-----------RAV1(1)
                   <---------GLK1(1)                  --------->MYB55(2)
                   --------->GLK1(1)                  --------->MYB111(2)
                   <------ZmHOX2a(2)                  --------->MYB52(2)
                  <---------ARR11(2)                  <---------MYB46(3)
                  <---------GATA12                <------MYB83
                  --------->ARR11(3)           <---------ANAC58
                  --------->ARR11(2)           <---------ANAC58
                  --------->RVE1(2)      <---------AHL25(3)
                  <---------ARR14(3)     <---------AHL20(1)                         <---------GATA12
                  <---------ARR11(3)     --------->AHL20(1)                         --------->GATA12
                  <-----------ARR10      --------->ARR11(3)                        --------->KAN1
                  <---------AGP1        --------->AHL12(1)                      <---------MYB52(1)
                  --------->ARR14(2)    <---------AHL12(3)                     <---------RAP2.6(3)
        ---------->DOF2<---------LBD16  --------->AHL12(3)                    <---------MYB46(3)
----------->GT1   --------->GATA12      --------->AHL20(2)                  <---------At4g35610
<---------ZAT6    <---------ARR14(2)    <---------AHL12(1)              ------>ZmHOX2a(2)       ----
---ANAC46 --------->DOF5.7(1)          --------->AHL12(2)             <---------ARR11(3)        <---
------ZAT14      <---------CCA1(2)----------->GT1 <------MYB46(1) --------->ANAC55(2)       ------->GAMYB
 
gtagagtaaacaaaagaagcagatctctcgggtgttttagtaaatatatagcttggtttgttggattaaacgtgatctcagccgttagattccaactgaa  2977100
                                                                                  --------->ARR11(3)
                                                                                  <---------ARR11(3)
                                                                               <---------YAB1
                                                                           --------->WOX13(2)
                                                                           <---------WOX13(2)
                                                                         --------->AHL20(2)
                                                                         <---------AHL20(2)
                                                                        --------->AHL20(2)
                                                                    --------->AHL25(2)
                                                                    --------->AHL12(1)
                                                                    <---------AHL25(2)
                                                                    --------->AHL20(3)
                                                                    <---------AHL20(3)
                                                                    <---------AHL12(1)
                                                                   --------->AHL12(2)
                                                                   <---------AHL12(2)
                                                                  <---------AHL20(2)
            <---------AHL12(1) <------NtERF2                      <---------AHL25(2)
            --------->KAN1  <---------PCF2                        --------->AHL12(2)
   <---------GATA12      --------->ALFIN1                         --------->AHL25(1)
   --------->GATA12    <---------ANAC46                           <---------AHL12(3)
--------->AHL20(2)     <---------ANAC58        <---------ANAC46  --------->AHL20(2)
<---------AHL20(2)     <---------ANAC58      <---------ANAC46    --------->AHL25(3)  <----------DOF2
----->AHL12(1)     ---------->DOF2       <---------WOX13(1)   ----------->GT1--------->YAB1
------AHL12(1)   <---------HSFB2a(2)<------ZmHOX2a(1)        ----------->GT1 --------->AHL20(2)
 
tttttaaatctacaaaaattctaaaagcgtgggccgagaggaagattgatgtgtgtattttgggccgataaaattttaaattataaatctttttgtgttg  2977200
                                                   --------->GATA12
                                                   <---------GATA12
                                              <---------ANAC58
                                              <---------ANAC58
                                        --------->ARR14(2)
                                        --------->GATA12                     ---------->DOF2
                                        --------->RVE1(2)              --------->ANAC58
                       <---------ANAC58 <---------GATA12               --------->ANAC58
                       <---------ANAC46 <---------ARR11(3)         --------->YAB5
                       <---------ANAC58 --------->GLK1(2)       <---------ICU4
                 --------->YAB5         <-----------ARR10       --------->YAB1                  ----
        <---------ANAC46   ---------->DOF2    <---------ANAC46<---------RVE1(2)   ---------->DOF2
 
atggtttttttgtgtgaagaagattagcgtaaaagctactcaaaatctgacttggattcaaatttgataatgacacccattgaagcaaagttttttcaaa  2977300
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AGI:  At1g09210.1   
Description:  calreticulin 2 (CRT2). Identical to Calreticulin-2 precursor (CRT2) [Arabidopsis Thaliana] (GB:Q38858;GB:O04152;GB:O80486;GB:Q94AW7); similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.2); similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.1); similar to Calreticulin precursor (GB:P93508); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Concanavalin A-lik
Range:  from: 2972844    to: 2976752    Orientation: Reverse
Links:  TAIR  MIPS  AIP 
 
 
Please cite the corresponding publications when using AthaMap.

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