Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <------MYB46(1)                                                               <--------P                                                             <---------ANAC46                            <---------ANAC58                 <------MYB83                            <---------ANAC58                 <------MYB46(1)                          <---------ARR11(3)                 ----------->GT1--------->At5g28300                          --------->ARR11(3)                --------->MYB111(1)                       --------->DAG2       ----------------->AGL1   --------->ANAC55(2)                      ---------->DOF2--------->TOE1(2)      --------->MYB46(2) ----HVH21       ----------->RAV1(1) <---------SPL7         --------->MYB111(2) >DEAR3(1)      ----------------->AGL3    --------->ANAC46  --------->MYB59----------->GT1 >DREB2C(2)  --------->ARR14(2)     ------>ZmHOX2a(2) ---------->DOF2<---------ANAC55(2)   <--------- >ANAC46     <---------ARR14(2) <---------YAB1  <---------GLK1(2)    <------MYB83 --------->AHL20(2)-   gaccagtaatcttcgaatcccacaaaaagttcttgtgatcgtccgagccagattagtaaagtttggtagataggtgatggtaaaatatatgtgctttggg  2882100               <---------ALFIN1  --------->ARR14(3)  <---------GLK1(2)  <---------ARR14(3)  <---------ARR14(2)  --------->ARR11(3)                --------->ATHB12                              --------->AtMYB61  <---------ARR11(3)       <----------DOF2                        <---------MYB52(1)<---------ALFIN1 -DOF2 <-----------GT1     <---------DAG2                        <-------GAMYB <-----------GT1 ---------->ARR10       <-----------GT1 <---------ZAT14         ----------->GT1--------->ANAC46  <---   agaagattttgactcccccatctggtttacttttccattgattgtactggtcttgtttttttgggtctgttatatatgtataaaccacacatttgtattc  2882200                              <---------HSFB2a(2)                              --------->HSFB2a(2)          --------->YAB1      ------>ZmHOX2a(1)     <---------YAB1         ------>ZmHOX2a(2)     <---------AHL20(2)<---------WOX13(1)                               <----------DOF2 <---------GLK1(2) -------DOF2         --------->ATHB12                       <---------YAB1     --------->ANAC55(2)   ttttgatattaatgagaaatacttcattgatcctagaatgtgtattagagcagaacaaaatgttgattctggttcttttttatgtgatttgattctctgt  2882300                                                                                          --------->ARR11(3)                                                                 <---------TOE2(3)        <---------ARR11(3)                                                               ---------->DOF2          ----------->GT1                                                              <---------AHL20(2)   ------>ZmHOX2a(1)                                                              --------->AHL20(2)  --------->TOE1(2)                                                             <---------YAB1       --------->TOE2(2)                                                          <---------YAB1     <---------AHL20(2)                                                         --------->ARR11(3) <---------AHL20(2)  <----              <---------YAB1                           ----------->GT1   --------->WOX13(1)    ------        --------->ARR11(3)                        ---------->DOF2<---------TOE1(3)--------->TOE2(3)      --------->ARR14(2)                    ------->TEIL <---------ARR11(3) --------->AHL20(2) ------   gaatgccaaatatgttgtgatacaacaaaactacttgtgaaatttgaacctccaaagaagataattaaaggttgccaattaaatcctaagaagataataa  2882400                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                                      --------->ANAC46                                                                                     ------>NtERF2                                                                                 --------->TGA1a                                                                                 ====================                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                      ----------->HVH21                          --------->O2           <---------TOE2(3)         ------>ZmHOX2a(2)                           --------->bZIP60(2)         <---------AHL20(2)         --------->At4g35610                          ====================     --------->AHL20(1)             <---------At4g35610                          --------->ANAC46     <---------AHL20(2)            <---------ARR11(3)   <---------ICU4      ----------->HVH21     --------->AHL20(2)            --------->ARR11(3) --------->GLK1(2)    <---------WOX13(1)       - --------->AHL20(2)              <---------YAB1       --------->ARR11(3) --------->ATHB12       ----- -----AHL20(2)                 --------->YAB1        <---------GLK1(2)   <---------MYB46(3) <-------- --->AHL20(2)                  <---------ICU4    --------->At4g35610    <---------ATHB12  <---------ZAT2 --->YAB1--------->AHL20(2)   <---------ATHB12--------->At4g35610   ------------>CBF<---------ALFIN1<   aaatgaattaattaatgtaagagataaaacaaatcatgatctgacaagagcagaagaatcttgacataagcccaatggttgacacgacacccagctttta  2882500   <----------DOF2 =============bZIP_DOF                                            --------->DAG2         --------->YAB1 ==bZIP_DOF                                          ----------->GT1   --------->At4g35610 -------->ARR11(3)                              ---------->DOF2  ---------->DOF2    --------->AHL20(2) ----->DOF2                *TSS         ------>ZmHOX2a(1)     ----------->GT1       <---------AHL20(2) --DOF2                  <----------DOF2<---------YAB1     --------->DAG2     --------->TOE1(3) ---------ARR11(3)     ---------->ID1------>ZmHOX2a(1)    ---------->DOF2     --------->TOE2(3)   aagctctttccacttacttccccttgtctttctaaattcctcctcattgttaaagtcgaaaaaagggtaaagcagcaaaaccctaataaaatcacaacaa  2882600                  ------>ZmHOX2a(2)                  ==================================HOX2a_HOX2a                 <------ZmHOX2a(2)                 --------->MYB46(3)                 ===================================HOX2a_HOX2a                       <-----------HVH21                <---------AGP1                    -------->P                         --------->ANAC58                --------->ARR14(3)             <------ZmHOX2a(2)                     --------->bZIP60(2)                <---------ARR14(3)           <------ZmHOX2a(1)                       --------->ANAC46                --------->AGP1       ------>MYB83--------->WOX13(1)          <----------DOF2                <---------ARR14(2)   ------>MYB46(1)                   --------->GLK1(2)                --------->ARR11(3)  --------->ANAC46                  --------->ARR14(2)                <---------ARR11(3) <---------MYB111(2)                <---------GLK1(2)<---------ZAT18               <---------ARR14(1)  --------->MYB46(3)                 <---------ARR14(2)               <---------CCA1(2)   <---------MYB111(1)           <-----------HVH21   --------->ANAC58  --------->ZAT6--------->ARR14(2) <---------MYB55(2)   <-----------ARR10<-----------GT1   attaacacaaaaaaaccagatcttaaaactctctctacccaccaagaggatcaaccagtctcttccccttcagattctcctttccacaggtcactctcgt  2882700                                                                             <---------REM1(1)                                                                        <------MYB83                                                    --------->ANAC55(2) <------MYB46(1)            <-----------GT1          <---------AHL20(1)        --------->AHL20(2)       <----------DOF2               --------->ARR11(3)      --------->AHL20(2)    --------->GLK1(2)                --------->AHL20(1)   --------->AHL20(2) <---------ANAC46   <---------ARR14(2)               <---------CCA1(2) <---------YAB1 <---------ANAC58   --------->ARR14(2) <---------ANAC58            <-----------GT1    <---------ANAC58   <---------GLK1(2)  <---------ANAC58         <---------GLK1(1)   <---------YAB1 <------ZmHOX2a(1) <   ttgcagattctttttttcaatttgacttgttcttacttatatattgtggaattcacatgataaaataatatgcttggtgttgtaggaacaattctagttg  2882800            --------->GLK1(2)           --------->ARR14(2)                                               ------>ZmHOX2a(1)     ---           <---------GLK1(2)                          <----------DOF2      --------->TOE2(3)  <------MYB46(1)           <---------ARR14(2)                   <---------GLK1(1)   ------>ZmHOX2a(1)         <------MYB83       --------->At4g35610                ---------->DOF2        <-----------GT1            <--------P       <---------At4g35610               <---------AHL20(2)     <-----------GT1            <---------ANAC46 ---------ANAC46                         --------->AHL20(2) <---------RVE1(1)        <---------AHL20(2)   ttctgtgttagcagattctttgttctgtctattttgaaggaaattaaaggcaatccctttcgatattttcctgttttccttatcaaatttatgggttgga  2882900                                                                    ----------->GT1                                                                   <---------TOE1(3)                                                              ------>ZmHOX2a(2)                                                            <---------ARR14(2)                                                            <---------ARR11(3)                                                            <---------AGP1                                               <---------ICU4<------ZmHOX2a(2)       <-------TEIL                            --------->ATHB12    <---------TOE2(3)    <------MYB83               <---------At4g35610          --------->ARR11(3)    <------MYB46(1)            --------->At4g35610         <---------CCA1(2)   --------->MYB111(1)--------->AHL20(2)      <---------YAB1--------->ARR14(2)   --------->MYB59    <---------AHL20(2)      --------->ICU4--------->AGP1 ------>ICU4       <----------DOF2       --------->YAB1   ----------->ARR10                         <   ataagtaggttgatgtattgtcttttaattcgaagctcaattttcatacttattgctgtttagatcttcaaggttaatctagaattacagattagaccat  2883000  Previous    Next  AGI:  At1g08960.1    Description:  CAX11 (cation exchanger 11); cation:cation antiporter. similar to CAX7 (CALCIUM EXCHANGER 7), calcium:sodium antiporter/ cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT5G17860.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61084.1); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837) Range:  from: 2879645    to: 2882234    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g08970.1    Description:  HAP5C (HEME ACTIVATED PROTEIN 5C); DNA binding / transcription factor. Identical to Nuclear transcription factor Y subunit C-9 (NFYC9) [Arabidopsis Thaliana] (GB:Q8L4B2;GB:O04033;GB:Q9SNZ0); similar to CCAAT-box binding transcription factor Hap5a, putative [Arabidopsis thaliana] (TAIR:AT1G54830.2); similar to CCAAT-box binding transcription factor Hap5a, putative [Arabidopsis thaliana] (TAIR:AT1G54830.1); similar to CCAAT-box binding transcription factor Hap5a, putative [Arabidopsis thaliana] (TAIR:AT1G54830.3); similar to hypothetical protein [Vitis vinifera] (GB:CAN61083.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal h Range:  from: 2882527    to: 2884014    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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