Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<-----------
GT1
--------->
ANAC46
<---------
ICU4
--------->
ANAC58
--------->
YAB1
--------->
AtMYB61
--------->
WOX13(1)
<---------
ALFIN1
--------->
GLK1(2)
--------->
YAB1
--------->
bZIP60(2)
------>
ZmHOX2a(1)
--------->
ANAC58
--------->
ANAC46
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
--------->
ANAC46
--------->
ATHB12
---------
ALFIN1
--------->
ARR11(3)
<---------
At4g35610
<---------
ICU4
<-----------
GT1
<--
ttccacatcagaatcaattatctcctcatcaaacttcatcttcctcctcttcttcatcatcaccacaccatcttctattatctctctcttgatgggtttc
2612800
<---------
DEAR3(1)
<---------
LBD16
<---------
ANAC46
<---------
ALFIN1
<---------
ARR14(2)
<---------
YAB1
----------->
GT1
-------->
P
--------->
ARR14(2)
------>
ZmHOX2a(1)
---------->
DOF2
<---------
ZAT2
--------->
ARR14(2)
<---------
YAB1
==============================
HOX2a_HOX2a
<---------
ARR14(2)
--------->
bZIP60(2)
------>
ZmHOX2a(2)
<---------
At4g35610
--------->
GLK1(1)
--------->
ANAC46
<---------
YAB1
--------->
At4g35610
<---------
GLK1(1)
------->
GAMYB
<---------
At4g35610
--------->
ZAT2
<------
ZmHOX2a(1)
--------->
MYB46(3)
<--
-------
At4g35610
------>
ZmHOX2a(1)
<---------
TOE2(3)
----------->
GT1
--------->
TOE2(3)
ttctgatgatcgaaagttatatcagagccatcctccgagctaccacggtggtatttaggaaatccgatttggagggtaaccacatcatccttattctctt
2612900
<---------
MYB46(3)
--------->
MYB46(2)
<--------------
--------->
MYB111(2)
--------->
MYB59
<--------
P
<---------
MYB55(1)
<---------
ANAC58
<---------
MYB46(3)
<---------
ANAC46
<---------
ANAC58
<------
MYB46(1)
<---------
ANAC58
<------
MYB83
<---------
ANAC58
--------->
ALFIN1
<---------
ANAC46
<---------
ANAC58
--------->
O2
<---------
ANAC58
--------->
LBD16
<---------
ANAC58
<---------
MYB46(3)
<---------
ARR14(2)
<---------
ANAC58
<---------
AtMYB61
--------->
ARR14(2)
--------->
ANAC55(2)
--------->
MYB55(2)
--------->
GLK1(1)
<---------
AHL20(2)
<---------
O2
<---------
ARR14(2)
<---------
GLK1(1)
<---------
YAB1
--------->
ANAC58
--------->
ATHB12
--------->
MYB111(1)
--------
DOF2
<---------
WRKY18(1)
--------->
ANAC58
--------->
REM1(2)
<-------
GAMYB
ctttgatatccgaggcttgactattattttccatgagcttgtttagaagaggcaagcattgaatagacgtgttgagtggttcttgtggttggtacaagaa
2613000
<---------
MYB46(3)
----------->
RAV1(2)
<---------
HSFB2a(1)
--------->
ALFIN1
------>
ZmHOX2a(2)
----------->
HVH21
--------->
HSFB2a(1)
<-----------
RAV1(1)
--------->
ANAC58
<------
ZmHOX2a(2)
====================
RAV
------>
ZmHOX2a(2)
--------->
ANAC58
<---------
ARR11(3)
<---------
At4g35610
--------->
ARR11(3)
--------->
ANAC46
--------->
ARR11(3)
--------->
At4g35610
<---------
ARR11(3)
<---------
TOE1(2)
-
AtSPL8
<-------
TEIL
<---------
AtMYB61
<---------
CCA1(2)
tagagatcgttccaacatgttcatctgactctggtggtgatttgatcttgatatagcatctcttgtcttcccacgatataacacagatttagaagaagta
2613100
<---------
ANAC58
<---------
ANAC58
<---------
ATHB12
--------->
ANAC46
--------->
ANAC58
<---------
ARR14(2)
<----------
DOF2
--------->
ANAC58
--------->
ARR14(2)
--------->
YAB1
<---------
DAG2
<---------
TOE1(3)
---------->
DOF2
<---------
ANAC58
<---------
At4g35610
<------
<---------
TOE2(3)
<---------
ATHB12
<---------
ANAC58
<---------
CCA1(2)
------>
ZmHOX2a(1)
gtagaagattgaggtttaagccattcaataaagcttggggattcgaaacttaagcctttcgtctcataagaattcat
ctctcgctttctctcctctcttt
2613200
----------->
RAV1(2)
-------->
P
------>
MYB46(1)
--------->
MYB52(1)
------>
MYB83
<---------
MYB59
<---------
MYB111(1)
----------->
GT1
--------->
AHL20(2)
<---------
ANAC58
*
TSS
<---------
AHL20(1)
<---------
ANAC58
--------->
ANAC46
--------->
AHL20(1)
---------------
--------->
ANAC58
--------->
AHL20(2)
--------->
MYB55(1)
--------->
ANAC58
<-----------
TBP
<---------
MYB46(2)
--------->
ANAC46
----------->
GT1
--------->
AtMYB61
<---------
ALFIN1
<---------
YAB1
<---------
AHL20(2)
<---------
ANAC46
----
DOF2
--------->
AtMYB61
--------->
ZAT6
---------->
DOF2
------->
TEIL
<------
cactctccctctctctctctctctctacctccacacgaa
gaagggtaagactagtagtatgaaaagtttatatattaatatcaacctacctggtgtgtat
2613300
<---------
TOE1(3)
--------->
ANAC46
<---------
TOE2(3)
<---------
ALFIN1
---------->
DOF2
==================
--------->
ARR14(2)
------>
MYB83
<---------
ARR14(3)
-------->
P
--------->
SPL7
<-----------
ARR10
------>
MYB46(1)
<---------
MYB52(1)
--------->
ARR11(3)
------>
ZmHOX2a(1)
<---------
SPL7
<---------
ARR11(3)
<---------
MYB111(2)
--------------->
AtSPL3
--------->
ARR14(3)
<---------
MYB111(1)
------>
WRI1
<----------
DOF2
--------->
GLK1(2)
------>
ZmHOX2a(1)
---
CCA1(2)
<---------
GLK1(2)
------------>
CBF
<----------
DOF2
<----------
DOF2
--------->
LBD16
cgtagccgttcgtcaaaataggttctctctttatttttctccaatacaaaatcttcttctttaaagttttgttttcttttcctcctaccccccaaaacgt
2613400
------->
MYC4
------->
PIF5
<-------
PIF5
<-------
MYC4
<-------
MYC3
<-------
PIF4
<---------
TGA1a
--------->
O2
--------->
ANAC55(2)
<---------
ANAC55(2)
<---------
O2
--------->
TGA1a
==========================================
bZIP_DOF
<---------
TOE1(2)
------------>
OsbHLH66
<---------
ALFIN1
<------------
OsbHLH66
<------------
<---------
SPL7
<------
MYB83
<-----------
HVH21
<---------
REM1(2)
<------
MYB46(1)
<-----------
RAV1(1)
<---------
MYB46(3)
<---------
ARR14(2)
<---------
ETT(2)
----------->
GT1
--------->
MYB55(2)
--------->
ZAT18
------->
MYC2
---------->
DOF2
--------->
ALFIN1
--------->
ZAT14
------->
PIF4
<------
ZmHOX2a(1)
<---------
ANAC46
-
<---------
ZAT18
<-------
MYC2
<----------
ID1
<---------
ANAC46
<---
<---------
ZAT14
------->
MYC3
================================================================
=========================
MYC_MYB
<---------------
AGL15
<-----------
GT1
--------->
ALFIN1
------
atagtgcagaaatgtcgcacgtgtctgtctacgcgtttacatcaagaggaaaagagtgaaattttcttcacaaaaatgtggtgggtcttacttcacatag
2613500
<
--------->
ANAC58
------>
ZmHOX2a(1)
-
--------->
ANAC58
--------->
TOE2(2)
--
<---------
ARR14(2)
--------->
TOE1(2)
<--
--------->
ARR14(2)
--------->
TOE2(3)
-----
---
AGL15
---------->
DOF2
--------->
YAB1
<----
--------->
DOF2
<----------
DOF2
--------->
GLK1(2)
<----
------
ZAT6
--------->
ANAC58
<---------
ARR14(2)
<-----------
GT1
<-----
===
MADS_MADS
--------->
ANAC58
--------->
ARR14(2)
<----------
DOF2
<----------
DOF2
------
----->
GT1
---------->
DOF2
<---------
ATHB12
--------->
YAB1
<-----------
GT1
<----------
DOF2
tgaaaaggaaacgcacaagcgcaaggcttttcaatgaaagagaatcctaagaatcatagtctttttttttttcttctttaccctcatttcctttcccatt
2613600
----------->
GT1
--------->
ARR14(2)
---------
AHL20(2)
<---------
ARR14(2)
-------->
AHL20(2)
------>
MYB83
--------->
YAB1
<---------
AHL20(2)
------->
YAB1
------>
MYB46(1)
<---------
YAB1
<---------
YAB1
-------
YAB1
----------->
RAV1(1)
--------->
YAB1
<---------
WOX13(1)
---->
ATHB51
--------->
MYB46(3)
------>
ZmHOX2a(1)
--------->
ATHB12
-----
ICU4
>>>>>>>>>>
MYB80
<---------
ARR11(3)
--------->
ICU4
----
HAHB4
<---------
ARR11(3)
<---------
GLK1(1)
<---------
YAB1
----
YAB1
--------->
ARR11(3)
--------->
GLK1(1)
--------->
YAB1
-
--->
ICU4
<-----------
GT1
--------->
MYB46(3)
--------->
YAB1
<---------
ICU4
<-------
TEIL
<-
attaaaattttgtaacatcttaaaccaacaaatacgatatcctttcatcatattatagtcatgattgtcatttaagtgcatatagaccggcgaagacaaa
2613700
Previous
Next
AGI:
At1g08290.1
Description:
zinc finger (C2H2 type) protein (WIP3). similar to NTT (NO TRANSMITTING TRACT), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G57670.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64917.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)
Range:
from: 2609993
to: 2613239
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version