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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                  --------->LBD16
                ------>ZmHOX2a(2)                                     --------->CCA1(2)
               <------ZmHOX2a(2)                                     --------->ARR11(3)
              --------->ARR14(2)                          --------->ANAC46
              <---------ARR14(2)                         --------->SPL7                         <---
  --------->AHL20(2)            <------MYB46(1)         <---------ALFIN1<---------YAB1        ------
  <---------AHL20(2)            <------MYB83  <---------GLK1(2)      <---------ARR11(3)     <-------
 --------->AHL20(2) <----------DOF2  --------->YAB1<-----------GT1 <---------TOE2(3)    <----------DOF2
 
gaaaattaattcgacccgatccggtttaagttatttggtttcataaaccgattttctccataccccaattgagatatgagagtgtttaagactttaccgg  2590500
                                                <---------ANAC58
                                  <---------ANAC58
                                  <---------ANAC58
                                  <---------ANAC46
                         <---------ALFIN1       <---------ANAC58
                        <---------ZAT14        --------->ZAT2   --------->At4g35610
------DEAR3(1)          <---------REM1(2)    <------NtERF2      <---------At4g35610
--->LBD16             --------->ZAT14      <---------DEAR3(1)------>MYB46(1)
--LBD16     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ZAT2------>MYB83
 
aggtgattcgagttcaaggagacagtctacacttgtgacttgtgagtcggagcttgagaacacctacagctacaagaaggaagtttgttttcgcctcgag  2590600
                 <---------ICU4
                <---------YAB1
                --------->ICU4
              --------->YAB1
      ------>ZmHOX2a(1)           --------->DAG2      ---------->DOF2
 <---------GLK1(1)      --------->HSFB2a(2)    <---------GLK1(1)    ---------->DOF2       ----------
 --------->GLK1(1)      <---------HSFB2a(2)    --------->GLK1(1)<----------ID1<----------DOF2  -----
 
ctagaaatcctaatttgtcatcatcgtctcgaatggaaaggctgtgttcgaaatccaaaatgcaaatgcgataaagatgggcttttagataggcccaatt  2590700
                                                         <---------YAB1
                                                         ----------->GT1
                                                   <<<<<<<<<<E2Ff
                                                   <<<<<<<<<<E2Fb
                                                   <<<<<<<<<<E2Fc
                                                   <<<<<<<<<<E2Fd
                                                   <<<<<<<<<<E2Fe
                                                   <<<<<<<<<<E2Fa
                                                  --------->LBD16
                              <---------ANAC58   <---------LBD16
                              <---------ANAC58<<<<<<<<<<<<<<<E2Fc
                              <-------GAMYB   <<<<<<<<<<<<<<<E2Fb             ------>ZmHOX2a(1)
                             <---------MYB46(3) <---------LBD16      <---------AHL20(2)
                             <------MYB46(1)  <<<<<<<<<<<<<<<E2Fa  <---------RVE1(1)
                             <------MYB83     <<<<<<<<<<<<<<<E2Fd  <---------CCA1(1)
                        --------->ATHB12      <<<<<<<<<<<<<<<E2Fe <---------GLK1(2)
                   <---------YAB1           --------->DAG2  <---------YAB1 <-----------GT1
               <---------ANAC58            ---------->DOF2--------->YAB1  <-----------GT1        <--
-->CBF         <---------ANAC58   ------------>CBF----------->GT1 <---------ARR11(3)             <--
---->YAB1 --------->ALFIN1  <---------AtMYB61 <<<<<<<<<<<<<<<E2Ff --------->ARR11(3)   <----------DOF2
 
agagtccaaaaatgaggggcttatcagtgatttggttgccaataccaaaagcgcgggaaaatgataaaagatttttttttcctctctactctttcactca  2590800
                                                                         <------ZmHOX2a(1)
                                                                       --------->LBD16
    --------->LBD16    --------->ZAT6                           <---------GLK1(2)                 --
    ------>NtERF2    ------>MYB46(1)      <---------WRKY18(1)  <---------HSFC1(2)                <--
   --------->ANAC46  -------->P          --------->WRKY12      --------->HSFC1(2)      -------------
  <---------LBD16    ------>MYB83        --------->WRKY38(1)---------->DOF2            <------------
-------DAG2  ---------->DOF2       <----------DOF2       ------>ZmHOX2a(1)   ---------->DOF2    <---
--------DOF2--------->ANAC46---------->DOF2       <---------GLK1(2)   <---------LBD16------>ZmHOX2a(1)
 
ctttctccggcatccacgaagccctaccagtaaaagcccttttgttgaccctaaattctccttcaaagcttctccaggaataaagctcctctctatatag  2590900
                               <------NtERF2
                               ------>NtERF2                                   <---------MYB46(3)
                               --------->LBD16                                <---------AtMYB61
                              --------->DEAR3(1)                              --------->ALFIN1
                              --------->RRTF1(2)                           <---------DEAR3(1)
                       <---------YAB1                                     <---------LBD16
                     --------->YAB1           <---------ARR11(3)       --------->ARR14(1)
                    --------->AHL20(2)  <---------At4g35610            --------->CCA1(2)
            <---------ANAC46  --------->ANAC46--------->ARR11(3)      <---------ARR14(2)
------->GLK1(2)     <---------AHL20(2)  --------->At4g35610           --------->ARR14(2)
-------GLK1(2)--------->ANAC46--------->RAP2.3(2)                     --------->ARR11(1)
-->AGL15   <---------LBD16    --------->RAP2.6(2)                    <------ZmHOX2a(1)        <-----
---AGL15<-----------HVH21    --------->RAP2.3(1)               =============HOX2a_HOX2a       <-----
---ZmHOX2a(1)--------->LBD16 <---------LBD16----------->ARR10  ------>ZmHOX2a(2) <------------------
 
gaatctctctctgtcccgcgtaatttataatcgccgcaaaatgagcggagataatcgaagacgggatcgaaaggatacgcggtggtcgaagaagcctaag  2591000
                                                                             --------->ARR14(2)
                                                                             <---------ARR14(2)
                                                                            <-------GAMYB
                                                                           <---------MYB46(3)
                                                                           --------->MYB55(2)
          --------->LBD16                                                  ----------->GT1
        <---------LBD16                                                    <------MYB83
    --------->ZAT6                                                         <------MYB46(1)
   <---------ZAT14       <---------ARR11(1)                             <---------ANAC46
 --------->ZAT18         <-----------ARR10                          ================MYC_MYB
 <---------ZAT18         ------->TEIL--------->ARR14(2)             <---------O2                <---
 --------->ZAT14         --------->GLK1(2)   <----------DOF2        <---------TGA1a  <---------GLK1(2)
----TOE1(3)        ------->TEIL      <---------ARR14(2) ----------->GT1 <---------ANAC58        <---
----TOE2(3)   --------->At4g35610<---------LBD16    ----------->HVH21   <---------ANAC58       <----
---WRI1 --------->ZAT14 <---------CCA1(2)    =================================bZIP_DOF   <---------YAB1
 
gtagtgaacactgcggaagatgaactcgaatctaaactcggatttgggcttttctctgaaggtgaaacccgacttgggtggttactcacattctcatcgg  2591100
        <---------ALFIN1                                     <---------GLK1(2)
     ----------->HVH21                                       <---------ARR14(2)
     --------->ANAC46                                        --------->ARR14(2)
     <---------ETT(1)                                     <---------ANAC46
<---------ARR11(3)                                   <------MYB83
--------->ARR11(3)                          --------->ARR14(2)                                     -
-----P------>NtERF2                         <---------ARR14(2)                            <---------AHL20(2)
------MYB52(1)                ----------->GT1        <------MYB46(1)                     <---------AHL20(2)
-----MYB52(1)               --------->TOE2(3)       --------->MYB59 --------->AHL20(2)   --------->AHL20(2)
 
taagttctccgacactctaatctggactcaaccttgttaattgagagtatttgagtaggtttcggattcgattatatgtgaatttctgtaaattaaatat  2591200
                                                                                           ---------
                                                  --------->GLK1(2)                   ----------->GT1
      ------>NtERF2             <---------ICU4  <------ZmHOX2a(1)                   <---------WOX13(1)
     <---------RAP2.6(2)       <---------MYB52(1)<---------GLK1(2)                --------->ATHB12
     --------->ETT(2)   ------->TEIL          <---------TOE2(3)               <-----------GT1
-------->ATHB12       --------->YAB1      --------->GLK1(2)     ---------->DOF2  <---------YAB1
 
aagcattggcgactgaaccatacaatgaaactccattagtgcgagaatttaggattctaggtaatgtcaaagtactagtatttactgattggataatcta  2591300
                                                                                          <---------ICU4
                                                                                          -------->HAHB4
                                                                                       <--------HAHB4
                                                                                       --------->YAB1
                                                                                    <----------DOF2
                                                                               <---------ZAT2
                                                                               <---------At4g35610
                                                                               --------->At4g35610
                                                                          <---------At4g35610
                                                                          --------->ZAT2  --------->YAB1
                                                                          =====================bZIP_DOF
                                                                          --------->O2--------->ICU4
                                                                          <---------O2<---------YAB1
                                                               <----------DOF2 --------->ZAT2
                                    ================================================bZIP_DOF
                        ------>ZmHOX2a(2)                      =====================bZIP_DOF
                       <------ZmHOX2a(2)                  <----------DOF2 --------->TGA1a--------->ICU4
                      --------->ARR11(3)                  ==========================bZIP_DOF
                      --------->ARR14(2)          <---------ANAC46        <---------ZAT2 <---------ATHB51
                      <---------ARR11(3)          <---------ANAC58        --------->At4g35610   <---
                      <---------ARR14(2)          <---------ANAC58        <---------TGA1a<---------YAB1
>GLK1(2)<---------RAP2.6(3)         ---------->DOF2    ------->TEIL     <-----------RAV1(2) <-------
 
ctacgttttgcagtcatcttgggaagatcgcgatactgggaaagtctatagttgtgtggacctttactttgttactcaggtgagctgctataattatggt  2591400
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AGI:  At1g08260.1   
Description:  EMB2284/EMB529/POL2A/TIL1 (EMBRYO DEFECTIVE 2284); DNA-directed DNA polymerase. similar to POL2B/TIL2 (TILTED2), DNA-directed DNA polymerase [Arabidopsis thaliana] (TAIR:AT2G27120.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ64066.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16656.1); similar to putative DNA polymerase epsilon catalytic subunit protein isoform b [Oryza sativa (japonica cultivar-group)] (GB:BAD23092.1); contains InterPro domain DNA-directed DNA polymerase, family B, exonuclease; (InterPro:IPR006133); contains InterPro domain Region of unknown function DUF1744 (InterPro:IPR0136
Range:  from: 2590941    to: 2606889    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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