Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <<<<<<<GRF7                         --------->MYB52(1)                <-----------GT1                        ----------->HVH21              <--------HAHB4                      ----------->RAV1(2)              --------->ATHB51                     -------->P                        --------->YAB1                     ------>MYB83                      <---------ICU4           ------>MYB83       <-                     ------>MYB46(1)                  --------->ICU4          <---------MYB59      XX                    <---------ALFIN1              ----------->GT1 ---------->DOF2        ----------->RAV1(1)                <-----------GT1                ---------->DOF2--------->TOE2(3) ------>MYB46(1)------ ------->GT1   <-----------GT1   ------------------------>ANAC81  xxxxxxxxxxxxxxxx>smallRNA(s)-------   agaaaaacacttatatttttcccaacctgacagaaaacaaacaaaacaaaaaaggaataattaacatcaaaagttcaaaaccaaactagttcaacataaa  2304600                                                                                 --------->AtMYB61                                                                              --------->ANAC58                         ------>ZmHOX2a(1)                                    --------->ANAC58                     --------->ARR14(2)                                       --------->ANAC46                     <---------ARR14(2)                                     <---------ALFIN1                     <---------ARR11(1)                  --------->ZAT6     --------->ANAC46                    <---------CCA1(2)  <---------------AGL15                --------->ANAC58  --------->AtLEC2  <---------ARR14(1) --------------->AGL15      --------->AHL20(2) ------->GAMYB ------TEIL       <---------ANAC58    ----------------->AGL2     --------->AHL20(1)------>MYB46(1) XXXXXXXXXXXXXXXXXX>MIR416 --------->REM1(1)---------->DOF2      <---------AHL20(1)------>MYB83  <--- --->DAG2         <---------ANAC58    ----------------->AGL3    --------->AHL20(2)--------->MYB52(1) --->DOF2       <---------ANAC46   --------->REM1(1)--------->RAP2.6(2)     --------->ANAC58    -----   gttcatacaaacattgttctgcgtatcctacatgactacatccaaaaaaagaagccgaaacactaaatatatatacacacacaccaacgggacaatataa  2304700                                   ------->GAMYB                                 ------>MYB83                                 ------>MYB46(1)                                --------->MYB52(1)                               --------->AtMYB61                            --------->ANAC58                                                      <--                            --------->ANAC58                                                      ---                            --------->ANAC46                                                   <-----                          --------->ANAC46                                                     ------      <------ZmHOX2a(1)   --------->ANAC58                                            ------>NtERF2 --------HVH21            <---------ALFIN1              <------ZmHOX2a(1)           <---------RAP2.6(2) ---->ANAC46              --------->ANAC58        ---------->DOF2      --------->ANAC46       <------   gtcacagaggagtcacaatctaatacacacacaccaacgggacaatataagtcaaagaggagtcacaatctaagcgcaactaggttgccgcttgggaggc  2304800                                         --------->ARR11(3)                                --------->At4g35610                                <---------At4g35610                                <-------GAMYB                                <------NtERF2                               <---------MYB46(3)                               ------>NtERF2                               <---------ERF1                               <---------ATERF1(1)                               <---------DEAR3(2)                               <---------RAP2.3(1)                              <---------RAP2.3(3)                              --------->ATERF1(2)                              <---------RAP2.3(2)                              <---------DEAR3(1)                              <---------ATERF1(2)                             --------->ATERF1(1)                            <---------ATERF1(1)                            --------->LBD16                            <---------RAP2.3(1)                         --------->ARR14(1)                         --------->CCA1(2)       <---------HSFB2a(2)------>ZmHOX2a(2)       --------->HSFB2a(2)<---------LBD16<---------ARR11(3)   --------->AtMYB61     <------ZmHOX2a(2)             --------->MYB55(2)   <---------ALFIN1     <---------ARR14(2)             <---------MYB46(3)  --------->MYB46(3)    --------->ARR11(3)             --------->ABI4(2)  <---------MYB55(2)    <---------ARR11(3)            --------->ALFIN1 -------At4g35610       --------->ARR14(2)           <---------MYB52(1) ------>At4g35610       --------->ARR11(1)         <---------DEAR3(1)                   ------>ZmHOX2a(2) ----At4g35610          <---------AGP1   <-----------GT1              <---------HSFB2a(2) --->ATERF1(1)          --------->AGP1  --------->RVE1(1)             --------->HSFB2a(2) ---ATERF1(1)         ----------->ARR10 --------->CCA1(1)<---------PCF2 ---------->DOF2<------ZmHOX2a(2)   tgctaccaccgagaagaacaagtctagatccggcggctgaaaatatcccttcttcggtggttccctcttcttcccaaagcctagtagcgatctcttcctt  2304900                                              ------->MYC2                                              <-------MYC2                                             <---------O2                                             --------->O2                                             <---------ANAC58                                             =====================================================MYC_MYB                                             <---------TGA1a                                             --------->TGA1a                                             <---------ANAC58                                             =============MYC_MYB                                     --------->WOX13(1) <---------ANAC46                        <----                                  --------->LBD16       <---------ANAC58                        -----                                 --------->ANAC46       <---------ANAC58                       <-----                     --------->GLK1(1)       <---------ANAC55(2)                       <-----------HVH21                     <----------TaMYB80      --------->ANAC55(2)                      --------->ANAC46                     --------->CCA1(2)       <---------ANAC46                        <------------AtMYB77                    <---------ARR14(2)  <---------ICU4 --------->ATERF1(1)           --------->MYB46(3)                    ---------->TaMYB80  --------->YAB1 <------NtERF2              --------->MYB46(3)                    --------->ARR14(2) <---------ATHB12--------->ALFIN1        --------->YAB1  ------         --------->ZAT18      <---------ARR14(2)    --------->ATERF1(1)        <---------ICU4  <-----        --------->ALFIN1      --------->ARR14(2) <--------P                   <---------YAB1   <-----     <---------AtMYB61       --------->GLK1(1)------->MYC3                  --------->YAB1     ------     <---------DEAR3(1)      <---------GLK1(1)<-------MYC3                  <---------ICU4    <------     --------->ALFIN1<---------GLK1(1) --------->ICU4 <-----------HVH21    --------->ICU4     <------   --------->LBD16 <------NtERF2<---------LBD16--------->ALFIN1          --------->YAB1<-----------TGA1 <---------LBD16 <---------ANAC46<---------LBD16--------->REM1(2)  <---------At4g35610------->GAMYB   ctcaccggaggtggacaaggcggatatgctggtatccggcaatcatcacgtgtaggcgtcgtgcatcccatctgataatcatcatcaaccgtcaccgtat  2305000                                                       --------->DAG2                                                 --------------->AGL15                                                 <---------------AGL15                                                <-----------------AGL2                                                <-----------------AGL1                                                =====================================================         <---------TOE1(2)                      ----------------->AGL1     <------NtERF2                              ----------------->AGL3   <---------DEAR3(1)                        <----------DOF2 -----GLK1(1)                              <---------TOE1(2) ---->GLK1(1)                           --------->ANAC58                            --------->ZAT6 ----ARR14(2)                      <----------DOF2------>ZmHOX2a(1)               <-----------GT1 --->ARR14(2)                    --------->At4g35610   <---------TOE2(3)       <---------ICU4 ----ARR11(1)                    <---------At4g35610   <---------TOE1(3)     <----------DOF2 ------ARR10                     <------NtERF2  <-----------------AGL3   <---------ANAC58          -- ->TEIL  <---------TOE2(2)     <---------ZAT18  ----------------->AG  <---------WOX13(1)     -------- ---CCA1(2)         ------>ZmHOX2a(1)   --------->ANAC58   <-------TEIL  <---------ANAC58    <------- ---ARR14(1)  <-----------GT1  --------->ZAT18  <-----------------AG <------------CBF  --------------   ctccgtcgtcgtagtttttctcctccatttttgtccgctctctcgcactttcctaataaggttcttaattagattgcttctttattacactagttttgga  2305100                                                                         <-------MYC2                                                                         <-------PIF5                                                                         ------->MYC2                                                                         <-------PIF4                                                                         <-------MYC3                                                                         ------->PIF5                                                                         ------->PIF4                                                               <---------SPL7                                                              --------->ANAC58                                                              --------->HSFB2a(1)                                                              <---------HSFB2a(1)                                                      --------->ALFIN1   <-------MYC4                                                     ------->MYC3        ------->MYC4                                                     ------->MYC4        ------->MYC3                                                     <-------MYC4       <---------TGA1a                                                     ------->PIF5       --------->bZIP60(2)                                                     <-------MYC2       --------->TGA1a                                                     ------->MYC2       --------->O2                               <---------ANAC58      <-------MYC3       <---------O2                               <---------ANAC58      <-------PIF5       --------->ANAC55(2)                           <------MYB83             <---------O2        <---------ANAC55(2)               <---------HSFB2a(2)      --------->HSFC1(1)    --------->ANAC58               --------->HSFB2a(2)      <---------HSFC1(1)   --------------->AtSPL3             <----        <---------ANAC58   <------MYB46(1)          --------->O2 --------->SPL7                 -----        <---------ANAC58  --------->MYB59           --------->ANAC46    =================bZIP_DOF ==MADS_MADS   <---------HSFC1(1)  <---------ANAC58 =====================================bZIP_DOF --- --------->HVH21        <---------ANAC58--------->HSFB2a(2)  <---------------AtSPL3  ----------->GT1 ->HSFB2a(2)   --------->HSFC1(1)  <---------ANAC58 --------->TGA1a   <------------OsbHLH66     <---- --HSFB2a(2)  <---------LBD16 <-------TEIL          <---------TGA1a   <---------ALFIN1        ======= ->AGL15<---------ANAC46<---------ANAC58<---------HSFB2a(2)<------ZmHOX2a(1)  ---------->DOF2 <------   agtgaccgtagcttgttctggaagttgctaggtacttgcggtctagaaacttacacgtggaggaacgtactgccacgtgctaaagcgtagttatattcag  2305200                      <---------ALFIN1                     <---------ZAT18 -----ZAT2         --------->ANAC58                     ----------->GT1 ---->ZAT2 ----------->RAV1(1)                       <---------ANAC46 ------>ALFIN1     --------->ANAC58                  <---------ANAC58        <---------At4g35610 -----At4g35610    --------->ANAC46                  <---------ANAC58        --------->At4g35610 ======================RAV                      <-----------RAV1(1)         <---------TOE2(3) -----RAV1(2)<---------ALFIN1              --------->YAB1                 ---------->DOF2        <---   gtgggaatagttgccacacataccccactcgagtcaaatgctcgtttataatgtggcttagttaaaacgaagcccattaagctaaacaagggcccgaatt  2305300                              <---------GLK1(1)                              --------->CCA1(2)                             <---------ARR14(2)     <---------MYB46(3)                             <---------GLK1(2)      <------MYB46(1)                             --------->ARR14(2)     <------MYB83                             --------->ARR11(1)    <---------AtMYB61                             <---------ARR11(3)   <---------MYB55(1)                             --------->ARR11(3)   <--------P                         <---------DOF5.7(2)      <---------MYB52(1)                      --------->TOE2(3)          <---------MYB52(1)                                 -                     --------->ANAC46        --------->MYB52(1)                            --------->ANAC58                     --------->ANAC58       --------->MYB52(1)                             --------->ANAC46                     --------->ANAC58  --------->AHL20(2)                                  --------->ANAC58    --------->At4g35610  ---------->DOF2--------->AHL20(2)                                <---------LBD16    <---------At4g35610--------->DOF5.7(2)  <-----------GT1                 ----------->GT1--------->ANAC55(1) --------GT1      --------->MYB46(3)   <---------AHL20(2)                  *TSS           --------->LBD16   tactggagctaaggccattaaccacgttaaagatttgcgaaataaataaccggttggtttttagttgaaagactaaaccggttgaaataatccacggaac  2305400                                                          ----------->HVH21                                               --------->At4g35610                                               --------->ZAT2                                               <---------At4g35610                                           --------->ANAC58                                <---------ANAC58        --------->ALFIN1         ------->GAMYB                <---------HSFB2a(2)        --------->ANAC46                     <---------MYB52(2)                --------->HSFB2a(2)        --------->ANAC58     --------->AHL20(2)        --------->YAB1      <-----------RAV1(1)       <---------ANAC58        ----------->GT1         --------->MYB46(3) ---------->RAV1(1)             <---------ANAC46    ---------->DOF2         ------>ZmHOX2a(1)<-------   aacaacatatgttggagtctggaacgcgttgatgtcttggttcccaagcagctcaaaagtgtgacataaattgttgtcctcaacaaacaccataaaaatc  2305500  Previous    Next  AGI:  At1g07500.1    Description:  unknown protein Range:  from: 2304763    to: 2305028    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g07510.1    Description:  FTSH10 (FtsH protease 10); ATPase. similar to FTSH3 (FtsH protease 3), ATP-dependent peptidase/ ATPase [Arabidopsis thaliana] (TAIR:AT2G29080.1); similar to hypothetical protein OsI_019542 [Oryza sativa (indica cultivar-group)] (GB:EAY98309.1); similar to AAA-metalloprotease FtsH [Pisum sativum] (GB:AAK77908.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21625.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR00359 Range:  from: 2305375    to: 2309541    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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