Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <---------ARR11(3)  ---------->DOF2<---------YAB1                                                    --------->ARR11(3) <---------AHL20(2)                                                                --------->GLK1(2) --------->AHL20(2)    --------->At4g35610           ------->TEIL   --------->MYB46(3)   caattaaagaattaagactcttattagcttcaagtgtattgtctaaacttatatgaacatgctaaatcgaaccacaaaatcacaaaatctacaagaacaa  2259700                                       --------->TOE2(3)                                     --------->ARR11(3)                                     <---------ARR11(3)                                    --------->YAB1                           --------->ANAC58                                              --------->YAB1                           --------->ANAC46        <---------ICU4                       <---------YAB1                           <----------ID1    --------->TOE2(3)                   <---------ARR11(3)                           --------->ANAC58<---------YAB1      --------->ANAC46  --------->ARR11(3)              --------->YAB1     <---------ICU4    --------->YAB1          --------->CCA1(2)      <--              ----------->GT1   --------->ICU4    --------->ICU4          <---------ARR11(3)     <---   ttcaaattttaagctattgtaatatgaagacgacataattatcttattcttaataatcaacttccacataaaacaagatttaagaacttcatcatactcg  2259800                                                                                                    <                                                                                             ------>ZmHOX2a(2)                                                                                            <------ZmHOX2a(2)                                                                                           <---------ARR11(3)                                                                                           --------->ARR11(3)        <---------AHL20(2)                                                                 --------->ARR14(2)        --------->AHL20(2)                                                                 <---------ARR14(2) <---------ANAC55(2)                           --------->HSFB2a(2)                         <---------AGP1 --------->ANAC55(2)                  ------>ZmHOX2a(1)                                    --------->AGP1 ----ZmHOX2a(2)                   <-----------GT1                           <---------At5g28300  ---- --------HVH21             ----------->GT1     <---------HSFB2a(2)         <-----------GT1<---------CCA1(2)   atcacatgatataaatgctgacatctatctagttattttccttacaagtctagaatcaagcttaagcacatcgaaatttacagcaacgattcagatctaa  2259900                                                                               <------ZmHOX2a(1)                         <---------GLK1(2)                                     --------->YAB1      ---------->DOF2 --------->ANAC46                                        ----------->GT1 ---------ALFIN1     --------->LBD16            --------->RAP2.6(3)        --------->TOE1(2) ----->MYB46(3)--------->HSFB2a(1)        ----------->GT1               --------->MYB52(1)    -------   caacacctaaaagacgatagttccacagaatttcgaaaacaactctgtaaaacggctctaaatcggaaactaaaaaacgaaggataatacaatcgatgaa  2260000                                                                --------->MYB52(1)                                                                ------>MYB46(1)                                                                -------->P                                                               --------->MYB55(1)                                        --------->LBD16 --------->MYB52(1)                                       <---------HSFC1(1)      <---------ALFIN1                                       <---------HSFB2a(2)    --------->MYB46(3)                                       --------->HSFB2a(2)<---------ETT(2)                                   --------->KAN4(2)   ----------->HVH21               <---------GLK1(2)  <----------TaMYB80  <---------MYB52(2)       --------->LBD16            <---------GLK1(1)  --------->At4g35610                            -      <---------ATERF1(2)         <---------KAN4(1)  <---------At4g35610                        <----      --------->ATERF1(2)        --------->ARR11(3)  ----------->RAV1(2)                        -----     <---------LBD16             --------->ARR14(2) ------->TEIL------>MYB83   ------->TEIL    <-----    --------->MYB52(1)           <---------ARR14(2)<---------ALFIN1  ----------->GT1        ---------    <---------At5g28300   --------->ZAT18         <---------ZAT14  --------->LBD16      --------->ARR14(2)   <-----------GT1       --------->ANAC58         --------->ZAT14<---------LBD16     --------->ANAC55(2) --->DOF2 <---------SPL7 --------->ANAC58  --------->GLK1(1)  <---------MYB55(2)   <-----------GT1 <-   gcaaattaccggcgaacgattctccaagcgcaatggatattccagaactctctgcacctgacgacccaccggagtaaaatgaatttcacgtttccccata  2260100                                                     --------->ANAC58                                                     --------->ANAC58                                         --------->HSFB2a(2)                                         <---------HSFB2a(2)                                      ---                                        <---------LBD16                                          ----                                       <---------LBD16                                           <---                                    --------->HSFC1(2)                                          <----   --------->ALFIN1                 <---------HSFB2a(1)                                         <---- -------->ATHB12                    <---------HSFC1(2)                                         <----- -----ARR14(2)                      --------->HSFB2a(1)                                        <----- ---->ARR14(2)                ---------->DOF2       --------->SPL7                             <----- ----CCA1(2)            --------->ARR14(2)        <---------SPL7                               <----- >LBD16                 <---------ARR14(2)  ---------->DOF2           <---------ICU4      <---------MYB52(1) --------YAB1          <------ZmHOX2a(1)<---------ANAC46 <------------CBF            <-----------GT1   tatgagtggggaatatatgtagagaggatttagaaagaagcttcgggaaagtcggacgcgattgaattttaaaaattccatcacatttttcagtttggcg  2260200        <----------DOF2        <---------DAG2      --------->ZAT2      <---------ZAT2 ------>NtERF2 ------>SPL7 ----->ATERF1(1) ---NtERF2                                          --------->LBD16 -----SPL7                                --------->YAB1 -------HVH21                           <------------CBF ----ANAC46                      --------->DAG2   <---------LBD16 ----RAP2.6(2)                  ---------->DOF2 <-----------GT1 ----ANAC58         <-----------GT1  ------------>CBF <---------GLK1(2)                         ----- ----ANAC58 <-----------GT1    ---------->DOF2<---------GLK1(1)    <-----------GT1   <---------GLK1(1)   tccggcccagctttatacgatttttcttctcacaaaaggcccaattgtatttcccagattatttgcatttatccaaattactagtagaattctcaaaaaa  2260300                                                                         <---------ZAT14                                                                         --------->At4g35610                                                                         --------->ZAT14                                   --------->YAB1               ------------>CBF                                   --------->AHL20(2)    <---------AHL20(2)                               <---------YAB1      <----------DOF2   --------->MYB52(1)                             --------->YAB1     --------->ARR11(3)   <---------ICU4          <-------  <-----------GT1           <---------YAB1  ---------->DOF2<------------CBF        <---------AtLEC2 ---->AHL20(2)   ----------->GT1--------->YAB1  <---------ARR11(3)  <---------ATHB12      -----------   aaataaacgattcgagcaaatgtgaaatttgtgataataatattctcaaagttctttatgaaattggccaataactgcagactcttcatggaaccaattg  2260400                        ------->GAMYB                                        <---------YAB1                       --------->MYB46(3)                       --------->DAG2--------->ATHB12                     <---------DOF5.7(2)                       ---------->DOF2-------->HAHB4                   --------->DOF5.7(2)                    <---------------AGL15       --------->YAB1                  --------->TOE2(3)                       <----------DOF2    --------->ICU4 -----CBF         --------->TOE1(3)                       --------------->AGL15  <-------TEIL ->CBF    <---------WOX13(1) <---------MYB52(1)    --------->LBD16   --------->At4g35610            <   cctctataactgatagatttcgttaacaaccgttttgaagaaacaatacattccgaagtactttaaaaagcagaagaaaatgattcattcagaatacaaa  2260500                 --------->LBD16                <---------LBD16                <---------ANAC46               <---------LBD16            ---------->DOF2                                                                   <------         ------>ZmHOX2a(1)                                                                 ========== --------->TOE1(2)         --------------->AtSPL3                                          <------ZmHOX2a(1) --------->TOE2(2)         --------------->AtSPL8                                          ========== --------->TOE2(3)    <---------HSFC1(2)                                   --------->At4g35610<------ ---------HSFB2a(1)   --------->HSFC1(2)                            ------->TEIL        <-----------RAV1(2)   aaaccttcgtcctgaatagcgggaaacttgcagtacattttttaagcgatatttcttctctactgagacgaaccagtagctgtagaaacatcaggagctt  2260600  Previous    Next  AGI:  At1g07350.1    Description:  transformer serine/arginine-rich ribonucleoprotein, putative. similar to transformer serine/arginine-rich ribonucleoprotein, putative [Arabidopsis thaliana] (TAIR:AT4G35785.1); similar to transformer serine/arginine-rich ribonucleoprotein, putative [Arabidopsis thaliana] (TAIR:AT4G35785.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO21517.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63579.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 2257423    to: 2260099    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g07360.1    Description:  zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein. similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G29580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21518.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 2260387    to: 2262863    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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