Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  ------>ZmHOX2a(2)                               <------ZmHOX2a(2)                               <---------GLK1(1)                               --------->GLK1(1)                              --------->ARR11(3)                              --------->ARR14(2)                                <----------DOF2                              <---------ARR14(2)                          <---------GLK1(2)                              <---------ARR11(3)                   ------>ZmHOX2a(1) --------->ANAC58    --------------->AGL15                      <------ZmHOX2a(2) <---------ANAC55(2)----------------->AGL1                     --------->ARR11(3) --------->ANAC55(2)<-----------------AG                       <---------ARR11(3) --------->ANAC46   <-----------------AGL1                     --------->ARR14(2) --------->ANAC58   <---------ANAC55(2)                <------NtERF2      <---------ANAC58 ---------LBD16     --------->ANAC55(2)           <---------bZIP60(1)     <---------ANAC58 ------->MYB52(1) <-----------GT1              <---------ZAT6  <---------ARR14(2)  <-----------GT1   attacggaagaaaattgaaattacctgtttgggatctccttgaagattagtgatggcagagaaacgatcctccatagcttctcttttacctctcttgcaa  2199300                                                                                             --------                                                                                             ------>NtERF2                                                                                            ---------                                                                                            <--------                                                                                           <---------ABI4(2)                                                                                          <---------ATERF1(1)                                                                                          ------>NtERF2                                                                                         <---------ARR14(2)                                                                                         --------->PCF2                                                                                    ------>MYB46(1)                                                     ------->TEIL                   ------>MYB83 <---                                                     --------->ARR14(2)             -------->P<------NtERF2                                                     <---------ARR14(2)             --------->MYB52(1)                                                     --------->GLK1(2)             --------->MYB55(1)                                                     <-----------ARR10            <---------MYB111(2)                                                     <---------ARR11(1)           --------->MYB46(3)                                                    <---------CCA1(2)             <---------MYB46(2)                  ------>MYB46(1)                   <---------ARR14(1)            --------->AtMYB61                  ------>MYB83     --------->ZAT14<---------ANAC46                <---------MYB111(1)             <---------ALFIN1 <---------ZAT14     <---------ANAC58      <---------At4g35610--------->ATERF1(1)          --------->YAB1  <---------ALFIN1        <---------ANAC58      <---------ZAT2   --------->ARR14(2)          ------->GAMYB  <---------ZAT14         <------NtERF2          --------->At4g35610--------->MYB46(3)         --------->MYB46(3)   --------->ZAT14  <---------DEAR3(1)       --------->ZAT2------->GAMYB       <-----------GT1   --------->ZAT14  ------>ZmHOX2a(1)           <------ZmHOX2a(1)--------->LBD16   taaacagagtaaccatcaccttccctctccactgctctactctcctccctcggcgtatctgcattcgatataggagctgcaataccaaccggagccaccg  2199400                                                                                      ----------->HVH21                                                                                     <------ZmHOX2a(1)                                                                                    <---------At4g35610                                                                                  <---------LBD16                                                                                  <-----------RAV1(2)                                                                               <----------DOF2                                                                               <---------ARR14(2)                                                                              <-------GAMYB                                                                              =======================                                                                             <---------MYB46(3)                                                                             <---------DEAR3(2)                                                                            <---------DEAR3(1)                                                                           --------->ATERF1(1)                                                                           <------NtERF2                    --------->ARR14(2)                                     <---------MYB52(1)                    <---------ARR14(2)                                    <---------RAP2.3(1)                  <---------DEAR3(2)                                      <---------ATERF1(1)                 <---------MYB46(3)                                       ------>NtERF2                 --------->MYB52(2)                                       <---------DEAR4(2)              <---------DEAR3(2)                                          --------->LBD16              <---------MYB46(3)        --------->LBD16=====================================HOX2a_HOX2a             <---------DEAR3(1)         --------->ANAC46                 <---------ATERF1(2)            <------NtERF2               --------->HSFB2a(2)              --------->ATERF1(2)          <---------DEAR3(1)           --------->HSFB2a(2)               --------->DEAR3(1)          --------->O2                 <---------HSFB2a(2)               <---------DEAR3(1)       --- ->MYB52(1)<-----------HVH21           <---------LBD16 <------ZmHOX2a(2) <---------RAP2.3(2)      <-- >DEAR3(1)<---------O2  ------>ZmHOX2a(1)--------->LBD16      --------->TOE2(3)====================== -ALFIN1<-----------HVH21          <---------ANAC58   <---------ARR14(2) <---------RAP2.3(3)      --- ------MYB52(1)<-------GAMYB       <---------ANAC58   --------->ARR14(2)<---------LBD16       <------NtERF2   gtatatcaagcgtcgtcggtcgtttcctcttcagaatgcttcccggaccagagtccgatccaaaccctagtttagccggcggtttcaggagacggaggca  2199500                    <---------ANAC46                   --------->At4g35610                   <------NtERF2                   ------>NtERF2               <---------TGA1a               <---------bZIP60(2)               --------->O2               <---------O2              --------->ATERF1(1)                                                        <------NtERF2            ----------->HVH21                                                           --------->LBD16        --------->ALFIN1  <------ZmHOX2a(1)                                            <---------ANAC46      --------->ALFIN1<------NtERF2                                                   <---------LBD16      <---------O2 <---------LBD16                                                  ----------->HVH21 ========================MYC_MYB               <------ZmHOX2a(1)                    --------->ALFIN1 ------>ARR14(2)  <---------ATERF1(1)  --------->MYB52(1)                          ------->MYC3 -------ARR14(2) <---------DEAR3(1)    --------->CCA1(2)                  <---------TOE2(3)        <- ========================bZIP_DOF     <---------ARR14(2)        --------->CCA1(2)  <-------MYC3    <- ------>MYB52(1)<---------LBD16       --------->ARR14(2)   ---------->DOF2<---------TOE1(3)    <-----   gaacggagatgtgggagacgcggcggaaggagaagtagaagaaacgggaggattgagatgggaaagagacagggttagggtttcatgtgccggagaagtg  2199600                                                       --------->ANAC58                                                       --------->ANAC58                                                       --------->ANAC46                      <-----------------------TaNAC69(2)        <-------GAMYB--------->CCA1(2)         <---------At4g35610  --------->ANAC58       --------->MYB52(2)                      --------->At4g35610  --------->ANAC58       <---------MYB46(3)                      <-------GAMYB--------->At4g35610       <-----------RAV1(1)                    --------->MYB52(2)    --------->ANAC46        ---------     <---------MYB52(1)                    <-----------HVH21<---------At4g35610         --------->TOE2(3) --------WRKY12 ---------->DOF2            <---------MYB52(1) ------->GAMYB    <---------ANAC58 --------WRKY38(1)  <----------ID1     --------->MYB52(1)  ----------->RAV1(1) <---------ANAC58 ----ZAT6   <---------HSFB2a(2)      <---------ZAT14 --------->MYB52(1)        <---------ANAC46  <---   ttcaacggtttgttgcagaaaagagacgaagacggagagaacaccggtgagttgcaaacggcaactgaagacgacatcgtttcgtagaaaacttaaaagt  2199700                       <---------MYB46(3)                      <---------WOX13(1)                     >>>>>>>>>ARR2           --------->ATHB12                                                                  <-------          --------->ICU4                                                                  --------->AHL20(1)          <---------YAB1                       *TSS           <---------WRKY12            <---------ARR11(3) <---------DAG2--------->ATHB12   <---------HSFC1(1)        <-----------HVH21      <---------ANAC58 <----------DOF2   <---------YAB1 <---------HSFB2a(2)      <---------ZAT6          <---------ANAC46 ->DOF2 <---------At4g35610       --------->HSFC1(1)   <---------ZAT14             <---------ANAC58 --------GT1 <---------WOX13(1)   --------->HSFB2a(2)  --------->ZAT14      ---------->DOF2 ---------   ttcctttttctgatgattgatttgattgttagtcttctagacgtttgtgtttctctgtttagtgtcaacgagagagaagaaagaggcttgaatatataat  2199800                                             <<<<<<<<<TBF1          <-----------GT1                                        <---------ANAC58    --------->WRKY18(1)                                        <---------ANAC46   <-----------HVH21                                        <---------ANAC58 --------->LBD16                                     <---------MYB52(1) --------->HSFB2a(2)                  <-------  --------->ARR11(3)                <-------GAMYB  <<<<<<<<<TBF1   --------->DOF5.7(2)       <------- --AHL20(2)                  <-----------RAV1(1)<<<<<<<<<TBF1<---------WRKY12          <----------DOF2 >AHL20(2)     <----------DOF2     <---------MYB46(3)   <---------HSFB2a(2)      <----------DOF2   ataagacctggacaagtctttctctgtttctctgtggccgttgcttcttcttcttcttccaggtcaaacgttaccactctcatctttctctttgactttt  2199900               ------>NtERF2               --------->ABI4(1)              --------->DREB2C(2)              --------->DEAR4(1)              --------->RAP2.6(2)              --------->ANAC58              --------->ANAC58              ------->GAMYB              --------->ANAC46              --------->DEAR3(1)             --------->MYB46(3)            <---------At5g28300          --------->MYB46(3)         <<<<<<<<<GATA-2                                     <---------HSFB2a(2)         <<<<<<<<<GATA-3                                     <---------HSFC1(1)         <<<<<<<<<GATA-4                                     --------->HSFB2a(2)    ----------->GT1         <<<<<<<<<GATA-1                         --------->At4g35610               ----------->GT1     <---------YAB1                              <---------ZAT2      <---------AHL20(2)   --------->YAB1<---------ALFIN1                <---------At4g35610--------->AHL20(2)    --------->DAG2   <---------ICU4----------->RAV1(1)      <----------DOF2    --------->HSFC1(1)<---------HSFB2a(2)  <---------ATHB12 <---------ALFIN1 <---------DAG2          <---------LBD16 <----------DOF2---------- ---DOF2------->TEIL                <----------DOF2------->GAMYB    <---------AHL20(2)   ---------->DOF2 --DAG2 --------->ARR14(2)    <-----------GT1<-----------HVH21--------->LBD16  --------->HSFB2a(2) --   tcaaatcatgaatccaccgccacagtccattttttctgctttttctttgtcaactgcgattttccagaaattaaatgactttgggaagataaaaagtcaa  2200000                                                                                                 <---                                                                                                -----                                                                                              <------             ---------->DOF2                                                                  -------     <---------RAP2.6(3)                                                                      -------     <------NtERF2                                                                            <------    --------->RAP2.6(2)                                                                       <------   ----------------->AGL1                                                                     -------   <-----------------AG <---------ALFIN1          ---------->DOF2                            <-------   <-----------------AGL1                        <------ZmHOX2a(1)                      -------->P <----------ID1--------->ANAC58      ---------->DOF2    <----------DOF2                 ------>MYB83 ->GT1      <------ZmHOX2a(1)     <---------AHL20(2)--------->ANAC58                    ------>MYB46(1) -------->DOF2 --------->ANAC58   --------->AHL20(2)--------->ANAC58                  <---------MYB59   ataaggccgaaataggaaagaaatcaacacctaaaattaaaaagcccatcaggaaagcctttaatgagatagcccatattaagtcggacctacatggatc  2200100                                                                <------ZmHOX2a(2)                                                               --------->ARR11(3)                                                              <---------GLK1(1)                                                              --------->GLK1(1)                                                        <---------ANAC46                                                       <------NtERF2                                                       --------->ZAT2                                                       --------->ATERF1(1)                                                       <---------ZAT2                                                      ------>NtERF2                                                      <---------RAP2.6(1)                                                      <---------ATERF1(1)                                                      <---------MYB46(3)                                                      <---------DEAR4(2)                                                      <---------DEAR3(2)                                                      <---------RRTF1(1)                                                      <---------ERF1         <---------ARR14(2)                           <---------RAP2.3(1)       ----------->HVH21                             <---------RAP2.3(3)   <---------GLK1(1)                                 <---------RAP2.6(2) -------DOF2                                         <---------RAP2.3(2) ->ZmHOX2a(2)                                        <---------DEAR3(1) ---ARR11(3)                                        <---------LBD16 -->ARR11(3)                                      <---------DEAR3(1) -->ARR14(2)                                      ------>ZmHOX2a(2) ---ARR14(2) --------->LBD16                     <------ZmHOX2a(2) ---AGP1 --------->ARR14(2)                     <---------ARR14(2)                  <---------ALFIN1 >TEIL --------->ANAC46             <---------CCA1(2)<---------ATERF1(2)       --------->ZAT14 --CCA1(2) <---------LBD16       *TSS           --------->ARR14(2)      ------>ZmHOX2a(2)        <<<<   tttagaaacccgacccgggtcgttttatttgcagagccatctcttgttcggatcggcggctcggagatcagggatcgctagttcagacaccttctcttct  2200200  Previous    Next  AGI:  At1g07160.1    Description:  protein phosphatase 2C, putative / PP2C, putative. similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G30020.1); similar to protein phosphatase 2C [Medicago sativa] (GB:CAA72341.1); contains InterPro domain Protein phosphatase 2C-related; (InterPro:IPR001932); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR015655); contains InterPro domain Protein phosphatase 2C, N-terminal (InterPro:IPR014045); contains InterPro domain Protein phosphatase 2C, manganese/magnesium aspartate binding site; (InterPro:IPR000222) Range:  from: 2197907    to: 2199747    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g07170.1    Description:  Identical to Uncharacterized protein At1g07170/At2g30000 [Arabidopsis Thaliana] (GB:O80873); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30000.1); similar to Os04g0663300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054163.1); similar to unknown [Picea sitchensis] (GB:ABK20981.1); contains InterPro domain PHF5-like (InterPro:IPR005345) Range:  from: 2200133    to: 2201145    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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