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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                               <---------TOE2(3)
                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                                        ------>NtERF2
                                                        ----------->RAV1(1)
                                                       <---------ETT(1)   --------->ANAC46
                                                   --------->ZAT2         --------->O2
                                                   --------->At4g35610    <---------O2
                                                   <---------ZAT2      <-------TEIL
                                              --------->HSFC1(2)     <---------GLK1(2)
                                    <------ZmHOX2a(1)  ----------->HVH21<-----------GT1
                                 <------ZmHOX2a(1) <---------At4g35610--------->CCA1(2)
                        <---------ANAC58      <---------HSFC1(2)     <---------ARR14(2)
                        <---------ANAC46     ------->TEIL     ---------->DOF2                -------
         <---------------AGL15<-----------RAV1(2) ----------->ARR10  --------->ARR14(2)<---------ZAT2
    <---------ARR11(3)  <---------ANAC58--------->MYB52(1)    <---------DOF5.7(2)      <---------At4g35610
    --------->ARR11(3) <-----------------------TaNAC69(2)   --------->DOF5.7(2)        --------->At4g35610
 
taaacaagttctccaaactgagtaataccgtgatcaggaggaacaacgaagcttagctccgacattaacgcagattcacgttgcatcggaagctgttaaa  2183700
                                   --------->YAB1
                                  <---------ATHB12
                                 --------->ANAC58
                                 --------->ANAC58
                                --------->WOX13(1)
                             --------->ANAC58
                             --------->ANAC58
      <---------WOX13(1)     --------->ANAC46
   --------->AHL20(2)     --------->ARR14(2)          ------->TEIL         ----------->GT1
   <---------AHL20(2)     <---------ARR14(2)--------->LBD16               ----------->GT1
--->DOF2           --------->MYB52(1)      <---------HSFB2a(2) ---------->DOF2                  <---
 
gaagaattaattgacaacaagacgacggagaaacgcaatcaaaattcccgatgaatgaatcggaaggaaagacgaagaagataaaacaaaaatcaaacag  2183800
                          --------->MYB46(3)
                          --------->DEAR3(2)
                        <---------ARR14(2)
                        --------->ARR14(2)
                     --------->LBD16
                     --------->ANAC46
                     <---------TOE1(2)
                  ------>ZmHOX2a(2)
                  =========================HOX2a_HOX2a
                 =============HOX2a_HOX2a
                 <------ZmHOX2a(2)
                 ==========================HOX2a_HOX2a
                <---------ARR11(3)
                <---------ARR14(2)
                --------->ARR14(2)
               <------ZmHOX2a(1)
              --------->HSFB2a(1)
              --------->HSFC1(2)
              <---------HSFC1(2)                                      ------>ZmHOX2a(1)
       --------------------->WRI1                              <---------At4g35610      <-----------
       <----------DOF2 <------ZmHOX2a(1)                       --------->At4g35610      ------------
     --------->ZAT2 <---------LBD16                          <---------ZAT18           -------------
     <---------ZAT2--------->TOE1(2)                         --------->ZAT18--------->TOE1(3)  <----
------GLK1(2) <---------HSFB2a(1)   <------ZmHOX2a(1)    <------ZmHOX2a(1)  --------->TOE2(3)<------
 
atgctcacagctttggaaggatcccaggaaccgatgagaggaagagagccatagacatgaggagtgagctctccttcaaccttagagttttccattttga  2183900
                     ------>NtERF2
                    --------->DEAR3(1)
                    --------->ANAC46
                    --------->ANAC58
                    --------->ANAC58
                 <---------ALFIN1
                 --------->DEAR3(1)
                 --------->AtMYB61            ------>ZmHOX2a(1)
                --------->ZAT2               --------->TOE2(3)
              --------->AtMYB61         <---------At4g35610
              <---------ALFIN1          --------->At4g35610                       --------->MYB55(1)
        --------->ZAT2  --------------------->WRI1                                <---------ALFIN1
        --------->At4g35610        --------->YAB1                                <---------MYB55(2)
        <---------At4g35610    <---------HSFC1(2)                 ----------->HVH21
----AGL15 ----------->HVH21    --------->MYB46(3)                <---------MYB111(1)             <--
--->AGL15 --------->WRKY12     --------->HSFB2a(1)              <---------At4g35610  --------->DEAR3(1)
---->AGL1 --------->WRKY38(1)  <---------HSFB2a(1)              ----------->RAV1(2)------>MYB83  <--
-----ANAC46  --------->MYB46(3)--------->HSFC1(2)               --------->At4g35610------>MYB46(1)
---YAB1<---------AGP1--------->LBD16<-----------TGA1           ------->TEIL      --------->MYB46(3)
 
gtgaaacgtagagctgaccacctccgccattggaaccatcgtcatcttcctcagtattcttcgatgcacctgaccccatcgaaacccaccgtctcaattc  2184000
         <----------DOF2
         <---------DAG2
     --------->LBD16
    --------->ANAC55(2)
   --------->HSFB2a(2)          --------->YAB1
   --------------->AtSPL8   <---------AHL20(2)
   --------------->AtSPL3   --------->AHL20(2)
 <-----------GT1           --------->AHL20(2)        ----------->GT1
-------DAG2          <---------AtLEC2           ----------->RAV1(1)          --------->CCA1(2)
--------DOF2       <---------YAB1              <----------ID1   --------->MYB52(1)   ---------->DOF2
 
ctttttcccgtacttttctgttttgaatgaattaataagaagaagagattgcgacacagaaaaaatcaaacggataagagatttgagagaaagagagaag  2184100
                                                                                              <-----
                                                                                              <-----
                                                 <-----------RAV1(1)                          <-----
                                           --------->KAN4(2)                                  ------
                                         --------->ARR14(2)                                 <-------
                 <----------DOF2         <---------ARR14(2)                                <--------
                 <---------DAG2          <---------MYB52(1)                               <---------MYB46(3)
               <---------ZAT2           <---------MYB52(1)                                --------->ATHB12
               <---------At4g35610     --------->LBD16                                   <---------YAB1
            <---------At4g35610       <---------ANAC46            --------->MYB52(1)  --------->ALFIN1
            --------->LBD16          <---------LBD16             <---------ARR14(2) <---------ANAC55(2)
           --------->ANAC46        --------->GLK1(2)            <---------GLK1(1)   <---------ANAC58
          <---------LBD16          <---------ARR14(2)    <------------CBF           <---------ANAC58
       --------->ZAT2            <---------HSFB2a(1)   --------->ZAT18           --------->ARR14(2)
       --------->At4g35610       --------->HSFB2a(1)   <-------TEIL  --------->LBD16--------->ANAC55(2)
       <---------ZAT2            <----------TaMYB80<-----------RAV1(1)           <---------ARR14(2)
       <---------At4g35610   ----------->GT1  *TSS --------->ALFIN1<---------LBD16 <-------TEIL
 
cgaagtcgctagctccgcagcttttttttgtctgggaaattccggttattctctgtggtgcattgggataaccggataagagcaaatacgtggtgattgg  2184200
                                                                                                ----
                                        <------------CBF  ------>MYB46(1)                    ------>ZmHOX2a(2)
                                       --------->ATHB51   ------>MYB83                       <------
-MYB83                                 --------->ATHB12 --------->MYB46(3)                   -------
----MYB46(3)                          <---------YAB1    --------->DEAR3(1)                 ---------
-MYB46(1)                          <---------YAB1       --------->DREB2C(2)                <--------
----->GT1                          <---------AHL20(2)  --------->DEAR3(2)             <------MYB83
--WOX13(1)                 <---------ANAC58          <-----------GT1                  <------MYB46(1)
----CBF     <-------TEIL   <---------ANAC58        <-----------HVH21                 --------->MYB59
 
ttaacttggtttagcttcattttgggctgggcttgttttttattattgggcctatgtcaccgactggtgagaagctctgagagtttatttggtcgatctt  2184300
                                           ------>ZmHOX2a(1)
                                          --------->TOE1(2)
                                         ------>ZmHOX2a(2)
                                        <------ZmHOX2a(2)
                                       --------->ARR11(3)
                                       --------->ARR14(2)
                                       <---------ARR11(3)
                                       --------->AGP1
                                       <---------GLK1(2)
                               <---------At4g35610
      <---------ANAC58     =====================HOX2a_HOX2a
      <---------ANAC58     ------>ZmHOX2a(1) *TSS  <---------AHL20(2)
----->AHL20(2)    <---------ZAT14      <---------ARR14(2)
-----------AGL3   --------->ZAT14     <---------At4g35610
---------->AGL3   <---------ZAT18    ----------->ARR10          <---------MYB52(1)
>ARR11(3)         --------->ZAT18 <-----------HVH21<---------YAB1--------->AHL20(2)          -------
-ARR11(3) ------------>CBF ====================HOX2a_HOX2a  ----------->RAV1(1)<----------DOF2
 
aaaatagagccttgtcaatagttcactctccttcagcgttcagatcctgagagttttattgagcgccattaatttcttctctcttttgggttttaagcgc  2184400
                                           <---------AHL20(2)
                                     --------->YAB1
                                    ----------->GT1
            --------->TOE2(3)       <---------YAB1                      --------->YAB1             <
 ------->TEIL           --------->MYB52(1) --------->AHL20(2)  --------->GLK1(2)<---------MYB52(1) <
-->ANAC46   --------->TOE1(3)       --------->ICU4             <---------ARR14(2)  <-----------HVH21
 
catgaatttcgaaaacctcaaatcacaaaaccgatggtgatgataaaaaattcgactgccgaagagaaactggaatcagagtcgtttgtcactcgtatta  2184500
           <----------DOF2                                                          <---------ANAC58
         <----------DOF2                     ----------->HVH21                      <---------ANAC58
 <---------TOE1(2)                         ----------->RAV1(2)                     --------->ATHB12
 <---------TOE2(2)                ---------->ID1         <---------MYB52(1)   <---------YAB1
--------->LBD16<------------------------ANAC81          <-----------HVH21    --------->AHL20(2)   <-
---------TOE1(1)       <------------------------ANAC81 <---------ANAC58  <---------ZAT6    ---------
---------TOE2(1) <----------DOF2 <-----------GT1       <---------ANAC58  ----------->GT1<---------ZAT6
 
atccgaggtttgctctttcgcttctctgtttttgtttttcgttttcgcctgaagttttccgtcggattgagacttggtgttaaaattgattgtgttattg  2184600
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AGI:  At1g07110.1   
Description:  F2KP (FRUCTOSE-2,6-BISPHOSPHATASE); fructose-2,6-bisphosphate 2-phosphatase. similar to fructose-6-phosphate 2-kinase-related / fructose-2,6-bisphosphatase-related [Arabidopsis thaliana] (TAIR:AT3G30200.1); similar to fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Bruguiera gymnorrhiza] (GB:BAB55655.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21422.1); similar to unknown [Populus trichocarpa] (GB:ABK94943.1); contains InterPro domain Phosphoglycerate mutase (InterPro:IPR013078); contains InterPro domain Carbohydrate-binding-like fold; (InterPro:IPR013784); contains InterPro domain Glycoside hydrolase, carbohydra
Range:  from: 2178103    to: 2184147    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g07119.1   
Description:  other RNA
Range:  from: 2184346    to: 2186538    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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