AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                                               -------->ATHB1
                                                               <---------ICU4
                                                               --------->ATHB12
                                                               --------->ATHB51
                                                               <--------ATHB1
                                                              <---------YAB1
                                                              <---------ATHB12
                                                     <-------TEIL                                  -
                                   <---------ANAC55(2)        --------->ICU4                     <--
 ----------->GT1        <---------DEAR3(2)       --------------->AtSPL8  --------->YAB1      -------
--ARR11(3)    --------->ATHB12     --------->ANAC55(2)        <---------ATHB51          <-----------GT1
 
tagccagttaaatcgaagcattggggtcgattcaaaaaacgtattccaatactaggtacaattcaattattgactctcataagttgtttttttgcaatat  1864400
                            --------->ALFIN1
                          <------MYB46(1)                                        --------->ARR11(3)
  --------->ANAC58        <------MYB83                       --------->MYB46(3) <------ZmHOX2a(1)
  --------->ANAC55(2)     --------->At4g35610              <---------ARR14(2) <---------TOE2(3)
  --------->ANAC46        <---------At4g35610         --------->MYB52(1)      --------->ANAC58
  <---------ANAC55(2)    <---------DEAR3(1)  --------->ZAT6--------->ARR14(2) --------->ANAC58
  --------->ANAC58--------->ARR14(2)   --------->ANAC58  --------->LBD16  --------->At4g35610  <----
---------->TGA1   <---------ARR14(2)   --------->ANAC58<---------LBD16   --------->ANAC58      <----
-------ICU4 <---------ARR14(2)    ----------->HVH21 ---------->DOF2      --------->ANAC58    <------
-->ICU4     --------->ARR14(2)  <------ZmHOX2a(1)  ---------->DOF2   --------->YAB1         --------
 
ttatgacgcaattcatattcgaatttgggaggtgaggatgacacgataacaccaaaaaaccggaaccactaagcataagctaaggaacttggaaatggtc  1864500
                   --------->ICU4
                 --------->AHL20(2)
                <---------AHL20(2)
                --------->AHL20(2)
                <---------ATHB51
        --------->DAG2
   <---------------AGL15
   --------------->AGL15
  <-----------------AGL1
-----WRKY38(1)  --------->ICU4
-----WRKY12----------->GT1         <------------CBF                           ------->GAMYB
-----HVH21----------->GT1       ------------>CBF                   ---------->DOF2
--->GT1---------->DOF2      --------->AHL20(2)          <----------DOF2      --------->ANAC46     <<
 
aaatgtctcaaaaagggaaataatttttaaaaaaaatcaattggcaagtttgattcagtctttaactcttaaaagtctcaacgaaatagaaactgaagac  1864600
        <------MYB46(1)
        <------MYB83 <-------MYC2
       --------->MYB111(2)
       --------->MYB46(2)
       --------->MYB59                                                                            <-
       --------->MYB111(1)                                                                       ---
       <---------MYB46(3)      <-------TEIL                                                      <--
      <---------MYB55(1)      <-----------GT1                                                    <--
      <--------P     <-------MYC3        --------->ZAT6                   <------------CBF       ---
    <---------MYB46(3)<---------ANAC46 <-----------GT1        <---------ANAC58        ---------->DOF2
--------->ZAT6       ------->MYC3    <---------YAB1           <---------ANAC58       --------->AHL20(2)
<<<<<<<<<<<<<<<LFY   ------->MYC2 --------->ICU4            --------->GLK1(2) <----------ID1 -------
 
ataacactggttggtacttgagcatgtgtgtatatacattattaacactaaaacttcacagaaattcttgctaaactcattgtgacaaataaagacataa  1864700
                                                <---------ANAC58
                                                --------->ALFIN1
                                                <---------ANAC46
                                                <-----------RAV1(1)
                                                <---------ANAC58
                                            <---------ANAC58
                                       <------------CBF
                                      --------->ATHB12------>NtERF2
                                      <---------AHL20(2)                                        <---
                                     <---------AHL20(2)  ----------->GT1                     <------
                                     --------->AHL20(1) --------->LBD16                      <------
                                     <---------AHL20(1)<------NtERF2                        --------
                                     --------->AHL20(2)<---------ANAC46                     <-------
        --------->ANAC58         --------->AHL20(2)   <---------LBD16                  <------NtERF2
        --------->ANAC58         <---------AHL20(2)  <---------ANAC58                  <------------
--------AHL20(2)                 <---------AHL20(1)  <---------ANAC58                 <---------RAP2.6(3)
------>AHL20(2)                 <---------AHL20(2)<---------DEAR3(1)      <---------DAG2    <-------
-------AHL20(2)                 --------->AHL20(2)--------->ALFIN1        <----------DOF2   --------
-------AHL20(1)          <---------ANAC58   <---------ANAC58     --------->AHL20(2)  <---------ANAC46
------>AHL20(1)<---------AHL20(2)--------->AHL20(1)  <---------ANAC46  <-----------GT1------>NtERF2
-->ICU4 --------->ANAC46 <---------ANAC58   <---------ANAC46   --------->TOE2(3)  <-----------GT1 --
 
tttaatatttcaagccatttttttttttgcttaaattaaatttattgacttgtgtggcgcgggtaacataaatttgactttttttttgccgtcgatgctt  1864800
 --------->ZAT14
 <---------ZAT14
------LBD16
---ANAC58
---ANAC58                              XXXXXXXXXXXXXXXXXXXX>MIR2939
->HSFC1(2)                           --------->ANAC58
--HSFB2a(1)                   ------>ZmHOX2a(1)                                  --------->ICU4
---------WRI1               ----------->RAV1(2)--------->ANAC46              <---------ARR11(3)
--HSFC1(2)              --------->MYB46(3)   --------->ZAT6           --------->ANAC58
->HSFB2a(1)           <-----------GT1--------->ANAC46                 --------->ANAC46     ---------
------->LBD16     <----------DOF2    --------->ANAC58                 --------->ANAC58     <--------
 
ccggtgaacagagccagagctcttttaacaatcctgagccaagccaaaacactaaaccatactcagcaagttcacgccaaggtcataatccatggattcg  1864900
                            --------->MYB52(1)
                 ------>ZmHOX2a(2)
                <------ZmHOX2a(2)
               --------->ARR14(2)
               <---------ARR14(2)              --------->ARR14(2)
           <---------HSFB2a(2)       <-----------GT1                              --------->ARR14(2)
>ARR14(2)  --------->HSFB2a(2)      <---------CCA1(2)                             <---------ARR14(2)
-ARR14(2)  <---------LBD16<---------MYB52(2)   <---------ARR14(2)       <----------DOF2            <
 
aagatgaagttgttctcggatccagtctcactaacgcttatatccaatcgaatcgtctcgatttcgctacttcttctttcaatcgaatcccttgttggaa  1865000
                                                                            <----------DOF2
                                                                 --------->ANAC55(2)
                                                                 <---------ANAC46
                                                                 <---------ANAC58
                                                                 ======================bZIP_DOF
                                                                 <---------bZIP60(1)
                                                                 --------->TGA2(1)
                                                                 <---------TGA2(1)
                                                                 --------->bZIP60(1)
                                                                 <---------TGA1a
                                                                 --------->TGA1a
                                                                 <---------ANAC58
                                                                 --------->O2
           <---------LBD16                                       <---------O2
          <---------ANAC46                                       <---------bZIP60(2)
          <---------ANAC58                                      ----------->STF1
          <---------ANAC58                              <---------YAB1  <---------ANAC58
<---------ARR14(2)    --------->GLK1(2)              ---------->ID1     <---------ANAC58
--------->ARR14(2)   <---------GLK1(2)   <---------ARR14(2)    <---------TGA2(2)
------ZmHOX2a(1)     --------->ARR14(2)  --------->ARR14(2)   ----------->TGA1
 
gaggaatcgccattcgtggaacacgattctctctggttactccaaatccaagacttgttgttatagtgacgtcttgcttctttacaatcgcatgagaagg  1865100
                                                                                        <---------ANAC58
                                                  <------MYB83                          <---------ANAC46
                                                  <---------MYB46(3)          <---------YAB1
                                                  <------MYB46(1)         <---------GLK1(1)
                                                 <---------AtMYB61        --------->ARR14(2)
        <-------GAMYB                         <-----------RAV1(1)         <---------ARR14(2)
       <---------ANAC46             <------ZmHOX2a(2)                     <---------GLK1(2)
       <---------ANAC58  <------MYB83 ---------->DOF2          --------->HSFB2a(2)      <---------ANAC58
       <---------ANAC58  <------MYB46(1)  <---------ANAC58     <---------HSFB2a(2)<-------TEIL
 <---------YAB1         --------->MYB59   <---------ANAC58  <----------DOF2--------->GLK1(2)
 
cattgtgatggcgttgatagtttcaatttggtatttgcgatcaaagcttgtgttggtttagggcttttagaaaatgggattctgattcatggcttggcta  1865200
                                        <-------GAMYB
                                       --------->MYB52(2)
                                       <---------MYB46(3)
                                       <------MYB83
                                       --------->MYB55(2)
                                       <------MYB46(1)
                                      <---------TOE2(2)
                   --------->ATHB12   <---------AtMYB61
                   <---------ICU4     <---------TOE1(2)                            --------->DAG2
                  --------->ICU4     <---------MYB52(1)                       --------->At4g35610
                <------ZmHOX2a(1)   <-------GAMYB                           --------->ZAT14
                --------->YAB1     <---------MYB46(3)        <------MYB83   <---------ZAT14
              <---------TOE2(3)  --------->LBD16             <------MYB46(1)<---------ZAT18
         <------MYB83   <---------ANAC55(2)                 --------->MYB111(1)   ---------->DOF2
         <------MYB46(1)<---------ANAC58<---------ANAC58    --------->MYB46(2)--------->ZAT18
       <--------P <---------YAB1 <-----------HVH21------->TEIL         ---------->DOF2
      <---------ANAC46  <---------ANAC58<---------ANAC58    --------->MYB59 --------->ZAT18  -------
 
tgaagaatgggttggataaggatgattacgttgctccgtcgttggttgagatgtatgcacaattaggtactatggaaagtgcgcagaaagtgttcgacga  1865300
<- Previous    Next ->

AGI:  At1g06140.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to EMB2758 (EMBRYO DEFECTIVE 2758) [Arabidopsis thaliana] (TAIR:AT4G33990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43513.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 1864795    to: 1866471    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version