Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->ANAC58                                                       --------->ANAC46                                                       --------->ANAC58                                                --------->ZAT6--------->ATHB12                                                --------------->AGL15                                               ----------------->AGL3                                               ----------------->AGL2                                 <---------DAG2----------------->AGL1    <---------YAB1   <---------YAB1   ---------->DOF2---------->DOF2               <---------ALFIN1 <---------YAB1 ---------->DOF2------->TEIL    ====================================================== ---GT1     --------->TOE2(3) <---------ARR11(3)<---------------AGL15             --------->MYB46(3)   aatattatgaaaaaacttaaaagatgattcaagaaccttttaaagtgtttccactaaaagcaagtgatttggattttggagtcatccaccttgtaatcta  1789800                                                       <---------HSFB2a(1)                                                       --------->HSFB2a(1)                                   --------------->AGL15                  --------->AHL20(2)                   --------->HSFC1(2)                  <---------AHL20(2)                   <---------HSFC1(2)               --------->TOE2(3)   <---------------AGL15                                          ---             <---------ATHB12     ----------------->AGL2        <----------DOF2   --------->MYB52(1)         <---------YAB1      <---------GLK1(1)  --------->MYB52(1)   --------->WRKY18(1)  --------->GLK1(2) ==================================================MADS_MADS<----------DOF2      --------->AHL20(2)   tctaatttgttatcaaacattaaaatttttgaattccccttatatagaattaacagaaatttctttctttggtcaaactaaaattaactgatattctatg  1789900                                                --------->TOE2(3)                                               <---------ICU4                                             --------->GLK1(2)                                             <---------ARR14(2)                                             --------->ARR14(2)                                           --------->HSFB2a(1)                                           --------->HSFC1(2)                                           <---------HSFB2a(1)                    <---------TOE2(3)                                           <---------HSFC1(2)        <<<<<<<<<<<<<<<<<LFY           <---------GLK1(2)          --------->ANAC58            --------->At4g35610       ---------->DOF2                --------->ANAC58    ----------->HVH21 <---------ANAC46       -- ------->DOF2                    <---------AtLEC2------>ZmHOX2a(1)<---------At4g35610   --------->TOE2(3)   taaagactaaaaagattatcaacaaattgaattttgcaagacggaagaatccttactgatgtgatggctgatcacattgggtttaagaaatgttaatggt  1790000                                       <---------AHL20(2)                                      <---------AHL20(2)                                  <---------MYB52(1)                                 --------->LBD16                                        <---------AHL20(1)                                <---------ANAC58                                        <---------AHL20(2)                                <---------ANAC58                                        --------->AHL20(2)                     ----------->GT1  --------->AHL20(1)                     <---------YAB1               <---------TOE2(3)<---------ANAC46                           --------->YAB1              ---------->DOF2   <---------ANAC55(2)                       <---------YAB1--------->AHL20(1)       <---------AHL20(2)       --------->ANAC55(2)                <-------GAMYB    <---------AHL20(2)       --------->AHL20(2) <-----------GT1                         ----------->GT1  --------->AHL20(2) ---------->DOF2    --------->MYB59   --------->AHL20(2)     --------->CCA1(2)--------->YAB1  <------ ---->ZmHOX2a(1)    <---------TOE2(3) <---------AHL20(1)---------->DOF2<---------YAB1--------->YAB1   cctaaaagtttaattttaaagtaaggtattacttccgtaatttaatacttagtagaaggaaagttatggggttaatattatgatatataataaatttggg  1790100                                                                                                    -                                                                                                    <                                                  --------->ARR11(3)                                -                                        <---------LBD16                                       -------                                       --------->ALFIN1                                  --------->AHL20(1)                --------->YAB1       <---------ZAT2                                      <---------AHL20(2)             --------->YAB1          <---------At4g35610   <---------ANAC58              <---------AHL20(1)            <---------AHL20(2)       --------->At4g35610   <---------ANAC58              --------->AHL20(2)     <-----------GT1                 --------->ZAT2<---------RVE1(1)              ----------->GT1   < ---LBD16  --------->AHL20(2)  <------ZmHOX2a(1)  <---------ARR11(3)        --------->ALFIN1<--------   ggactattttccatataataaaaacttgaaataggagagagctggggatagagatattcttacgtccaaacagagagagtggggaagaaaatttattaaa  1790200       <------NtERF2      ----------->GT1     --------->RAP2.6(2)                                                                         ----    <---------LBD16                                                                   --------->At4g35610   --------->At4g35610                                                                <---------At4g35610   --------->ZAT2                                                                     --------->ZAT14 --------->MYB46(3)                                                               --------->GLK1(2) --------->ATERF1(1)                <------ZmHOX2a(1)                            <---------ARR14(2) -------->At4g35610       --------->TOE1(2)                                      --------->ARR14(2) ---------At4g35610      <---------HSFB2a(1)  ---------->DOF2               --------->AtLEC2   ------ -------->ZAT2   <----------ID1    ----------->GT1                       ------->TEIL <---------ZAT14 --->DOF2        ----------->GT1   <----------ID1                        --------->ARR14(2)    <----- ---------ZAT2 ---------->DOF2    ----------->GT1             --------->MYB52(1) <---------GLK1(2) -YAB1--------->LBD16  *TSS       ------------------------>ANAC81        <---------ARR14(2)  <-------   gcagcagccggaaaaaaaaaagaaaaaacgttcgaagaggaaaaaaaaaaaagagggagaagagcaacgaagacggacctgcaaattctgcagtctccac  1790300           <----------DOF2          ------>ZmHOX2a(2)          ===================================HOX2a_HOX2a        --------->ARR11(3)   <----------DOF2 ------->HVH21            <---------DAG2 --->At4g35610        <---------ZAT18  <-----------RAV1(2)  <---------bZIP60(1) ----At4g35610        --------->ZAT14 ------>ZmHOX2a(1)     --------->bZIP60(1)    ---------->ID1 --ZAT14<---------ARR11(3)<----------DOF2            <----------DOF2           <----------DOF2   tgacactttcgatctttctctctgtccactttcttcaatcctcaggtttctgcgtctttgtgtcatcatctatctcttacgctttctcgtttttgcattc  1790400               <---------MYB52(1)              <---------At4g35610                                                     --------->ARR14(2)              --------->At4g35610                                                     <---------ARR14(2)              <-------GAMYB         <----------DOF2                                --------->ANAC58          <-----------HVH21 ------>ZmHOX2a(1)                                      --------->ANAC58    <-------TEIL --------->ATHB12<---------ARR11(3)                              <---------AtLEC2   <---------MYB52(1)  ---------->ID1               ----------->GT1       <---------MYB52(1)   tctccgttcatttgtcagttgatttgtctcctccagttctttggctaatgcaatcggataaacagtcgttttagcagttatttgcaaggatttgtttata  1790500                       <---------WOX13(1)                     --------->ATHB12     <---------At4g35610                 <---------ARR14(2)       --------->At4g35610       <---------ARR11(3)               ----------->ARR10       <-----------GT1              --------->ARR11(3)            --------->TOE2(3)    <---------YAB1                     <---------GLK1(2)            ------->GAMYB <---------TOE2(3) <----------DOF2    <XXXXXXXXXXXXXXXXXXXXXMIR840           <------------AtMYB77 --------->ARR11(3)           <------MYB46(1)                        <          <---------At5g28300   <---------ARR11(3)           <------MYB83<---------YAB1  <---------TOE2(2)         --------->ARR14(2) <------ZmHOX2a(1)               <---------AtMYB61            <---------TOE1(2)     --------->ZAT6 <---------YAB1<---------ICU4            --------->MYB59          <---------LBD16<   tttctcaacagtaaccgtagatttgattgaggatgatcattttccgcttcagtttctagggtttggtttagatttttcattgttttgctcggaggtttag  1790600                                                          ---------->DOF2                                                      <---------LBD16                                                    ------->TEIL                                                    <---------ARR14(2)                                                    --------->ARR14(2)                               ------->TEIL       <---------SPL7                              <---------ANAC58   <---------ANAC58                              <---------ANAC58   <---------ANAC46          <---------TOE1(3)------->TEIL          <---------ANAC58<---------ANAC46         <-----------RAV1(2)  <---------AtLEC2  --------------->AtSPL3------->TEIL <----------DOF2        <---------YAB1          <------NtERF2    <---------ANAC58                  -- ---------ANAC58   --------->ZAT6             <---------DEAR3(1) <---------ANAC58                  <- ---------ANAC58 <-----------GT1          <------ZmHOX2a(1)     <---------DEAR3(1)        --------->ALFIN1   tggctttctcttcaggttttatctctatgaatgcatgtctattaggagttggcgtacctggaaagggccgtgtatgtgagagaatgttagatgtgttcct  1790700  Previous    Next  AGI:  At1g05910.1    Description:  cell division cycle protein 48-related / CDC48-related. similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G15120.1); similar to hypothetical protein OsI_030977 [Oryza sativa (indica cultivar-group)] (GB:EAZ09745.1); similar to hypothetical protein OsJ_028841 [Oryza sativa (japonica cultivar-group)] (GB:EAZ45358.1); similar to bromodomain protein 103 [Zea mays] (GB:NP_001105102.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain Bromodomain (InterPro:IPR001487); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; Range:  from: 1790223    to: 1796646    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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