Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <---------MYB52(1)                                <---------ANAC58                         --------->At4g35610                    --------->REM1(2)    <-------GAMYB      ----------->HVH21  <---------At4g35610                                                    ----- ----->ANAC58 --------->MYB52(1)<---------ANAC58                                       <------------- ----->ANAC58------->GAMYB   <-----------RAV1(1)         ------->GAMYB                <-----------RAV1(2) ---->DOF2  <---------MYB52(2)  <---------ANAC46   --------->TOE2(3)     --------->CCA1(2) <-------TEIL   agccagaagtgacaactaactgtgttgagctctgtcgtgttcccgttgctaaatctcaacagcaattcgatagcgatatggccaagtttcaggtacaaaa  1721100                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                  <---------GLK1(1)                                                                                  --------->GLK1(1)                                                                                 --------->ARR14(2)                                                                                 <---------ARR11(3)                                                                                 --------->ARR11(3)                                                                                 <---------ARR14(2)                                                                                 <---------AGP1                                                                        =================HOX2a_HOX2a                                                                        ==================HOX2a_HOX2a      --------->MYB52(1)                                                <------ZmHOX2a(1)    ================HOX2a_HOX2a                                     --------->ARR14(2)    ------>ZmHOX2a(1)  <----------DOF2                              <---------ARR14(2)             --   --------->TOE2(3)<---------TOE1(3)                              ======================HOX2a_HOX2a ---->YAB1          <---------TOE2(3)               <------MYB83   =======================HOX2a_HOX2a --AtSPL8    ------>ZmHOX2a(2)                      <------MYB46(1)<------ZmHOX2a(1)               --   atagtccttaactgatcccattaagcttttgccatgtactgagaaacttgcatttggttaactaatgcaggataggatgaacagatctctcatggtatgt  1721200                                                                                                   <<                                                                                                   <<                                                                                                   <<                                                                                                   --                                                                                                   <-                                                        --------->CCA1(2)                          <-                                                       --------->ARR11(3)                          <<                                                       <---------ARR14(2)                          <<                                                       <---------ARR11(3)        =================RAV                                                       --------->ARR11(1)        ----------->RAV1(2)<                                                   ---------->DOF2               --------->At4g35610<                                                 <------NtERF2          <---------DOF5.7(2)       <--                                                --------->LBD16        <---------ARR14(2)         <--                                                <---------RAP2.6(3)    --------->ARR14(2)         <--                                                ------>NtERF2   <-------GAMYB    <---------ZAT2   <--                                               --------->RAP2.6(2)  <---------ANAC46              <--                                               --------->RAP2.3(3)  <---------ANAC58  ----------->RAV1(1)                                               --------->RAP2.3(2)  <---------ANAC58--------->At4g35610                                               --------->ATERF1(2)  <---------ANAC55(2)           ---                                               <---------ATERF1(2)  <---------ANAC55(1)           <--                                               --------->DEAR3(1)   --------->ANAC55(2)      <-------                                              --------->RAP2.3(1)<--------P      --------->ZAT2  ---- ------->ANAC58  ---------->DOF2        <---------WOX13(1)   <---------ANAC46    <---------At4g35610- ------->ANAC58<------NtERF2          <------ZmHOX2a(1)--------->ARR14(2)       ------->TEIL <-------   caagacaaattcgaggctgcaaagctactgaatatgaacaggattgatgccgccaaagatatggagggttgcgtaaacgatgcagctgcagcattacttg  1721300            ------>MYB83           --------->MYB52(1)          ------->GAMYB          --------->AtMYB61         --------->DEAR3(2)         <---------MYB55(2)        -------->P        --------->ANAC58        --------->ANAC58    --------->ANAC58    --------->ANAC46    --------->ANAC58 <<<<<<<AtERF-2 <<<<<<<AtERF-3 <<<<<<<AtERF-4 ---->NtERF2------>MYB46(1) --------ERF1 --------RAP2.3(1) <<<<<<<AtERF-1 <<<<<<<AtERF-5 ------NtERF2 ---------At4g35610 -------ANAC46------->GAMYB -------RAP2.3(3) -------DEAR3(1) -------ATERF1(2) -------RAP2.3(2) ------>ATERF1(2)                                                        <---------ANAC58 -------RAP2.6(2)                                                        <---------ANAC58 --ANAC58--------->MYB46(3)                                            <-----------GT1 ----->RAP2.6(3)                                                       <---------AHL20(2) -------->At4g35610                                          --------->ATHB12 <---------At4g35610<--- --ANAC58<---------MYB52(2)  <----------DOF2              <---------At4g35610 --------->At4g35610----   gcggctaagcaaccaacggtgtttattagggcttttaaaagtttttttgtatttctatacagttgatttggatttacttgtgctgagatagactatcgtt  1721400              <---------LBD16       --------->TOE1(3)       --------->TOE2(3)     <---------ARR11(3)     --------->ARR11(3)     --------->ARR14(2)  <---------AHL20(2)        <---------ARR14(2)  --------->AHL20(2)        <---------GLK1(2) --------->YAB1           --------->LBD16                                       ----------->GT1 <---------AHL20(2)     <---------LBD16   --------->LBD16                       <----------ID1     -- --------->AHL20(2)<------ZmHOX2a(2)    <---------LBD16                      ---------->DOF2      --- ------AHL20(2)   <-----------ARR10   <-----------GT1                      --------->CCA1(2) -------- ----->AHL20(2) --------->LBD16      <-----------GT1  ---------->DOF2   <---------ZAT6  ------------>CBF   taattaaaatcttaaaaccggatcaaaccggattctattttacccggtcttatgtccaaagtcgggtttagttagagataaaaggaaaaaatcaatttta  1721500                                                        ------>NtERF2                                                      --------->RAP2.3(1)                                                      --------->ATERF1(1)                                                      <------NtERF2                                                     <---------ERF1                                                     <---------DEAR4(2)                                                     ------>NtERF2----------->RAV1(1)                                                     <---------ATERF1(1)                                                     <---------ORA47(2)                                                     --------->LBD16                                                    <---------ATERF1(2)                                                    <---------DEAR3(1)                                                    --------->ATERF1(2)                     <-------TEIL                                                    --------->DEAR3(1)           --------->WOX13(1)                                     <------NtERF2  <---------RAP2.3(3)      --------->ANAC58                                   <---------DEAR3(1)<---------RAP2.3(1)     --------->ANAC46   <-----------GT1               <-----------HVH21  <---------RAP2.3(2)      --------->ANAC58 ------->DAG2                   --------->ANAC46   --------->ATERF1(1)  --------->YAB1     --------->CCA1(2) ------->DOF2               ------>ZmHOX2a(1)      <---------LBD16--------->ANAC46        --------->ARR11(1) ->YAB1 *TSS           <---------GLK1(1)    <-----------GT1      --------->MYB46(3)       --------->ARR11(3)   aaaagtcaccatctcaatcgaatgggtctccttcccgtcgtcggaattacttcgccggcgctcatcacccacaaaaatcacgccaatccaaagatacaga  1721600                                                                <---------AtMYB61  --------->At4g35610                                                           --------->ANAC58        <---------At4g35610                     <---------ZAT14                       --------->ANAC58        <------NtERF2                 --------->HSFB2a(2)                       --------->ANAC46     <------NtERF2             --------->TOE2(2)                            <---------LBD16       --------->ATERF1(1)           -------->P--------->ZAT18                     --------->ANAC58      <---------ATERF1(1)           ------->TEIL       <---------AtLEC2           --------->ANAC58 <---------LBD16  --------->GLK1(1)      --------->WOX13(1)      <---------ANAC46        ------>ZmHOX2a(1)   --------->At4g35610 --------->ICU4  --------->LBD16   ------->TEIL--------->WOX13(1)        --------->MYB52(1)<---------GLK1(1)   gacataatcaatctacctccgagaccactgtttcatggacttctcgcatcaatctcctcacgcgcaatggtcgattagcggaggcagcgaaggaattctc  1721700                  ----------->ARR10                 <------NtERF2                 --------->ALFIN1               <---------ANAC46              <------NtERF2             <---------ATERF1(1)             ------>NtERF2             --------->LBD16------->GAMYB            --------->DEAR3(1)                                             <---------HSFB2a(2)            <---------DEAR3(1)                               <---------ANAC46            --------->ATERF1(2)                              ----------->GT1            <---------ATERF1(2)     <----------DOF2         --------->ALFIN1--------->LBD16           --------->ATERF1(1)--------->ANAC46              <---------AtMYB61           <---------LBD16 --------->MYB46(3)             --------->ALFIN1 --------->HSFB2a(2)          <---------ATERF1(1) --------->bZIP60(2)      --------->LBD16     --------->ANAC46         --------->ANAC46--------->MYB52(1)     --------->ZAT14           <---------LBD16      ------  ----------->HVH21    <---------MYB59 --------->YAB1<---------LBD16 <-----------GT1           <-----   cgatatgacactcgccggcgtagagcctaaccacatcactttcatagctctactctccgggtgtggtgattttacctccggaagtgaagccttgggcgat  1721800                                                         --------->LBD16                                                        --------->ANAC58                                                        --------->DEAR3(1)                                                        --------->ANAC58                                                       <------NtERF2                                                       --------->ANAC58                                                       --------->ANAC58                                                      ------>NtERF2                                                   <------MYB46(1)                                                   <------MYB83                                                 <--------P                                               --------->ATHB12                                               <---------MYB46(3)        ------->TEIL           <---------YAB1                     --------->ICU4   --------->MYB52(1)    <------NtERF2 <----------DOF2                          <-----------HVH21   --------->ATHB51       ------>NtERF2 --->ARR14(2)<---------ANAC58            --------->bZIP60(2)  --------->YAB1        --------->DEAR3(1) ----ARR14(2)<---------ANAC58<---------YAB1   <---------YAB1 --------->ICU4        <---------RAP2.6(2)   ttgcttcatgggtatgcttgtaaacttggtcttgatagaaaccatgtcatggttggcaccgcaattatcggcatgtactccaaacgcggccgttttaaga  1721900                                                       --------->ATHB12                                                       --------->YAB1                                          <---------ANAC58                                          <---------ANAC46                                          <---------ANAC58                               ---------->DOF2                                       <---------MYB52(1)         <-------TEIL           <---------DOF5.7(2)             <---------YAB1           <-------GAMYB   <---------YAB1                   --------->DOF5.7(2)       <------MYB83                  ----------->GT1  <---------ATHB12         --------->WRKY18(1)       <------MYB46(1)              --------->MYB59   --------->ICU4          <-----------HVH21<-----     <---------WOX13(1)           ------------>MYB.PH3(1) ------>ZmHOX2a(2) --------->ALFIN1   ------   --------->ATHB12       ----------->GT1--------->MYB52(2)   <---------MYB46(3)<---------WRKY38(1)--   aggctagattggtttttgattacatggaagataaaaattcggttacttggaatacaatgatcgatgggtacatgagaagtggtcaagtcgataacgctgc  1722000  Previous    Next  AGI:  At1g05740.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05730.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73933.1); contains InterPro domain Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560) Range:  from: 1720673    to: 1721308    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g05750.1    Description:  PDE247 (PIGMENT DEFECTIVE 247). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67452.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1721508    to: 1724733    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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