Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           ----------->RAV1(2)                         <---------At4g35610                         --------->At4g35610              --------->ANAC58                                                                 <-----              --------->ANAC58                                                               --------            <---------ALFIN1 <xxxxxxxxxxxxxxxsmallRNA(le3)                                   <-------       ------->GAMYB  --------->MYB46(3)                                                --------->AHL20(2)       --------->ANAC46  <---------ZAT2                                  <---------AHL20(1)  <-------      --------->MYB46(3) --------->ZAT2     *TSS                         --------->ARR11(3)  --------    <xxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ZAT2  <---------ANAC46  --------->AHL20(1) <-------- <-------GAMYB--------->ANAC46         <---------At4g35610            <-----------TBP   <---------AHL20(2) ---------MYB46(3)   -------->P       --------->ANAC46 <---------ANAC55(1) <------------CBF --------- ->HVH21  <---------ALFIN1  <xxxxxxxxxxxxxxxxsmallRNA(s)        <---------TOE2(3)   <---------YAB1   tgtggttaacagccacacgctctaaccagctgagctattccagctacttgttatgttatgtgtatttatgttttatatattgtcttatcatttattaaat  1583900                                                                           ---------->DOF2                                                                     <---------AtLEC2                                                                     <---------ANAC58      <---------AHL20(2)                                             <---------ANAC58   <------------CBF                                                 <-------TEIL  --------->ATHB12                                               <------MYB46(1) -------CBF                                                      <------MYB83 ->AHL20(1)                                                     <---------MYB46(3) --AHL20(1)                                                     --------->ALFIN1 --AHL20(2)                                                     <---------AtMYB61     --------->YAB1 ->AHL20(2)                                                  <------ZmHOX2a(1)       <-------TEIL -AHL20(2)              --------->MYB52(1)                   --------->ATHB12      <---------ARR14(2) >AHL20(2)   <----------DOF2           <---------AHL20(2)  <---------TOE2(3) --------->DAG2   tgagttattgaatttctttttagtcgaaacggtgtttttttttaattcacttacaaaaaataaggattggtgcatgggaaaggccgattcataacaaatt  1584000                                                  <------NtERF2                                                <---------DEAR3(1)                                               --------->ATERF1(1)                                               <------NtERF2                                              <-----------HVH21                                              ------>NtERF2                                             --------->DEAR3(1)                                             <---------DEAR3(1)                                             <---------O2                                             --------->O2                                             <---------ANAC46                                            --------->RAP2.3(1)                                            --------->ATERF1(1)                                            ------>NtERF2                                            <------NtERF2                                           <---------ATERF1(1)                                           <---------RAP2.3(1)                                          <---------DEAR3(1)                                          <---------RAP2.3(2)                                         <---------LBD16                              ----------------->AGL3                              <-----------------AGL3                               <---------GLK1(1)                             ------->GAMYB<---------RAP2.6(2)             <------ZmHOX2a(1)        <---------AHL20(2) -------->P    <---------ZAT14         <-----------------AGL1        ---------->DOF2   <-----------GT1--------->ZAT18        <-----------GT1 <---------TOE2(3)   gtaggcccattaaaacgaagcccattatcaaccctatatatagtgcggcgtcggagtttttatatttttccaaacaggaattaagaaacccctctagtcg  1584100                    <----------DOF2                   --------->TOE1(3)--------->ARR11(3)                   --------->TOE2(3)<---------ARR11(3)                 -------->P------>MYB46(1)                ---------->ID1                 ------>MYB83  <----------DOF2 ----------->GT1      <---------CCA1(2)                 ------>MYB46(1)   <---------CCA1(2)    <-----------RAV1(1)                      ----             <------ZmHOX2a(2) <---------DAG2 <---------TOE1(3)   <---------CCA1(2)          <-------TEIL         <------ZmHOX2a(2) ------>MYB83       <---------TOE2(3)  ------>ZmHOX2a(1) <---------ANAC46   acgatatcgagatcgatccaacctttaccaacgctttatatctcttctaaggtaaaatttgtcgctccttatctctctcactgtttcttagaaaattcat  1584200       <---------AHL20(2)      --------->AHL20(2)     <---------YAB1   -------->HAHB4   -------->ATHB1   <--------HAHB4                                                   --------->ALFIN1   <---------AHL20(2)                                             <---------ANAC58   --------->YAB1                                                 <---------ANAC46   --------->ATHB51                                              <---------DEAR3(1)   <---------ICU4                 <---------TOE1(3)             ------>NtERF2                   <----  <---------ATHB51                <---------TOE2(3)          --------->At4g35610               ------  <---------YAB1          ---------->DOF2                    <---------At4g35610               <-----  --------->ICU4      --------->TOE2(3)                  <-----------HVH21                     <----- ----->TOE2(3)        --------->TOE1(3)          <------ZmHOX2a(2)<---------ANAC58        -----------   cttaattattatatagatagagaaccctaaaagttcaaggttgtatttgcgatcgaaactatcagcggccgtgttccgaaccagttttgaatttcaattt  1584300                                                  --------->DEAR3(1)                                                <---------ATERF1(1)                                                ------>NtERF2                                               <---------ATERF1(2)                                               --------->DEAR3(1)                                               --------->RRTF1(2)                                               --------->RAP2.6(2)                                               --------->RAP2.3(3)                                               --------->RAP2.3(2)                                               --------->RRTF1(3)                                               --------->DREB2C(2)                                              --------->RAP2.6(1)                                              --------->RAP2.3(1)                                              --------->ORA47(2)                                              --------->ERF1                                              --------->ATERF1(1)                                              --------->DEAR4(2)                                             --------->At4g35610                                             ------>NtERF2                                             <---------ATERF1(1)                                             --------->LBD16                                            --------->ANAC46                                            --------->DEAR3(1)                                           ======================HOX2a_HOX2a                                           --------->ATERF1(1)                                           ------>ZmHOX2a(2)                                         <---------ARR14(2)                                         ------->TEIL                                         --------->ARR14(2)                                      <---------WOX13(1)  <------ZmHOX2a(1)        ----------->GT1            <---------YAB1--------->ATERF1(1)          <---------ARR14(2)       <---------TOE1(3)         --------->YAB1--------->ATERF1(2)       <------NtERF2 -----AHL20(2)            <---------ANAC58 --------->MYB46(3)          --------->PCF2 --->AHL20(2)             <---------ANAC46=======================HOX2a_HOX2a  --------->ARR14(2) ----AHL20(2)      <----------DOF2 --------->ICU4<------NtERF2    <----------DOF2 ----AHL20(1)---------->DOF2    --------->ICU4--------->RRTF1(1) <---------ANAC58 ->CBF <---------TOE2(3)  <---------ANAC58<------ZmHOX2a(2)      <---------ANAC58   ttttttttgaaggttaaaagtctttgattcgtgaatgatgatggatccgccgcctacgaaggagtttgctttggccccagtatatgtgtattgggacatg  1584400                                            --------->LBD16                                           <---------ANAC58                                           <---------ANAC46                                           <---------ANAC55(1)               --------->At4g35610     <---------DEAR3(2)               <---------At4g35610     <---------MYB46(3)             <---------HSFB2a(2)       <------MYB83             --------->HSFB2a(2)       <------MYB46(1)             <---------GLK1(1)             <-----------RAV1(2)      <---------AtMYB61            --------->GLK1(1)               --          --------->ARR14(2)          <---------MYB46(3)         <------ZmHOX2a(1)                 <-          <---------ARR14(2)          --------->MYB111(1)      <---------TOE1(3)                   <-      <---------LBD16               <---------MYB52(1)   --------->ARR14(2)                  <-------    <---------SPL7        <---------YAB1   <---------ANAC58    <---------TOE2(3)            ---------   --------->ALFIN1     --------->YAB1--------->MYB59    <---------ARR14(2)            <-----------HVH21   ----------->HVH21   <---------YAB1<--------P     --------->MYB52(1)                ------>ZmHOX2a(1)   aagaggtgtccggttccagatgactatgatgctcgtcgggttggtccgtgtattaaacggattttaaggaaatcaggctacaatggtcctgtcaccatca  1584500                                   --------->TOE2(3)                               <---------bZIP60(1)   <---------MYB52(1)      <-----------HVH21  <-------GAMYB           <---------O2  ==================================MYC_MYB <---------MYB46(3)       --------->TGA1a <-----------RAV1(1)      ===================================================bZIP_DOF  --------->ANAC58 ------->ZAT14            --------->O2                                                 --------->ANAC58 --------At4g35610        <---------TGA1a --------->ALFIN1                     --------->ETT(2) ===== --------ZAT14  ====================bZIP_DOF                                   <---------ETT(2) ----- ----HVH21      ---------->DOF2--------->bZIP60(1)                <----------DOF2<------NtERF2------- >AtMYB61     <---------YAB1----------->HVH21             <---------GLK1(2)  <-----------HVH21<------   ctgctgttggctcactatcaaaggtccctcgtgacatccttgaagtggtctcttccactggaatctctctttatcacgaggtcgccagtaagcatcgatc  1584600                                                                                      <---------AtLEC2                                                                                     <-------TEIL                                                                                  --------->GLK1(1)                        --------------->AGL15                                   <------ZmHOX2a(1)                        <---------------AGL15                                  <------MYB46(1)          <-----------GT1<----------DOF2                                      --------->MYB59      <---------YAB1   =============================================================MADS_MADS      ------>ZmHOX2a(1)----------------->AGL1                                <--------P       <------     --------->TOE2(3) <-----------------AGL3                       --------->HSFB2a(2)       <------ ============HOX2a_HOX2a--------->TOE2(3)                           <---------HSFB2a(2)       <------ ->ZmHOX2a(2)          ----------------->AGL3                       <---------------AGL15     <------ -->ARR11(3)  <---------DAG2             ---------->DOF2     <---------AHL20(2)<------MYB83   <------ ---ARR11(3)  <----------DOF2<---------YAB1  <---------GLK1(2)     <-----------------AGL1     -------   ttctcatccttattccctttttatttcctttattagagagagagaaagagtctctctaagtatttagtttctgaaacaggtaggaaatgcatggtttcgt  1584700                                     <----------DOF2                                <---------At4g35610           --------->YAB1       <---------ZAT2     <---------WRKY18(1)  --------->ANAC58    ----------->HVH21     <---------TGA1a    --------->WRKY12      --------->O2    --------->WRKY38(1)   <---------O2                      --------->AtMYB61 ---ANAC58 <---------ICU4 --------->bZIP60(2)               <---------ALFIN1 ---ANAC46--------->ICU4  ======================bZIP_DOF--------->SPL7   ------>ZmHOX2a(1) ---ANAC55(1)             --------->ANAC58       <---------ARR14(2)  <---------GLK1(1) ---ANAC55(2)--------->ICU4------->PIF5          --------->ARR14(2) <---------ARR14(2) ---ANAC58<---------YAB1  --------->TGA1a       <---------CCA1(2)   --------->ARR14(2) -->ANAC55(2)<---------YAB1<-------PIF5      <-------TEIL  --------->MYB46(3)                       -   gttcccttgaccatgatgatttttagccacgtccagctactttgatgttcatatcccgtccaccactgtggattcctccaggcttctattctaatattct  1584800  Previous    Next  AGI:  At1g05390.1    Description:  pre-tRNA. tRNA-Asn (anticodon: GTT) Range:  from: 1583771    to: 1583844    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g05400.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20480.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); similar to hypothetical protein OsI_026076 [Oryza sativa (indica cultivar-group)] (GB:EAZ04844.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40196.1); contains InterPro domain Protein of unknown function DUF537 (InterPro:IPR007491) Range:  from: 1584341    to: 1585243    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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