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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
<---------
AHL20(2)
--------->
ATHB12
<----------
DOF2
--------->
YAB1
--------->
HSFC1(2)
--------->
AHL20(2)
---------->
DOF2
<---------
HSFC1(2)
----------->
GT1
<------
ZmHOX2a(2)
----------->
HVH21
--------->
AHL20(2)
----------->
GT1
----->
ANAC46
<---------
YAB1
------->
TEIL
--------->
YAB1
---------->
DOF2
cgacgatcaaacaaagatgatgtttggccttgacgaagcttttcat
ctattttaatttgcaaagtttaaagcagttaaataaaacttgtagataagttta
1583400
--------->
ATHB12
--------->
ANAC46
--------->
WOX13(1)
<---------
ICU4
<-----------
GT1
---------
<---------
ATHB12
-------->
ATHB1
--------->
ATHB12
----------->
RAV1(1)
-
----------->
GT1
<---------
CCA1(2)
<---------
ATHB12
<<<<<<<<<<<<<<<<<
LFY
---------
gaaatcgtgaaatcaatccatctcttataaaaaactaaatcattgaagaaacatgtttgatttcaacattggatgatataaacaacattgacattaaaac
1583500
<---------
ANAC46
<---------
ANAC58
----------->
GT1
<---------
ANAC58
>
AHL20(2)
---------->
DOF2
<---------
RAP2.6(2)
--------->
DOF2
---------->
DOF2
>>>>>>>>>
TBF1
<----------
DOF2
->
DOF2
------------------------>
ANAC81
<XXXXXXXXXXXXXXXXXXXX
MIR847
<-----------
RAV1(1)
-
agaaaagagttttcaaaaaaaaaaaaaaaaaaacacagaaaagagataaagaagaagaagagtgatac
tttgacattgtggcttcgatttcatatggtga
1583600
--------->
GLK1(1)
<---------
GLK1(1)
------>
NtERF2
<---------
RAP2.6(2)
<---------
ANAC46
--------->
CCA1(2)
--------->
RAP2.6(3)
--------->
ARR11(3)
--------->
MYB52(1)
<---------
ARR14(2)
----------->
TGA1
------->
TEIL
--------->
GLK1(2)
----------->
HVH21
<---------
ATHB12
--------->
TOE2(3)
--------->
DAG2
--------->
ANAC46
--------->
TOE1(2)
<------
ZmHOX2a(1)
--------->
ANAC58
<---------
ARR14(2)
---------->
DOF2
<-------
TEIL
--------->
ANAC58
--------->
ARR14(2)
-----
------>
TEIL
---------->
DOF2
<---------
REM1(2)
<----------
DOF2
<------
ZmHOX2a(1)
------
tgcaccaaagtaggagaaaagttcatgacggctacaaggaaacccat
gaatctttctgtctgataacaacaggaacctcagaatcagatatagatgaaaa
1583700
------>
NtERF2
--------->
DEAR3(1)
----------
<xxxxxxxxxx
<xxxxxxxxxxx
--------->
TOE1(2)
--------->
TOE2(2)
<---------
HSFC1(2)
>>>>>>>
ZML2
--------->
MYB46(3)
<------
MYB83
*
TSS
--------->
AHL20(2)
--------->
HSFC1(2)
--------->
HSFB2a(1)
--------->
AHL20(2)
--------->
HSFB2a(1)
<---------
HSFC1(2)
<---------
AHL20(2)
--------->
HSFB2a(1)
--------->
HSFC1(2)
<---------
AHL20(1)
<---------
HSFC1(2)
<------
MYB46(1)
--------->
AHL20(1)
--------->
HSFC1(2)
<---------
HSFB2a(1)
<-----------
GT1
--------->
AHL20(2)
<---------
HSFB2a(1)
<---------
MYB46(3)
--------->
ARR14(2)
--------->
YAB1
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
<---------
ANAC46
<---------
YAB1
<xxxxxxxxxxxxxxxx
smallRNA(fl3)
<
---->
DAG2
<---------
ANAC58
<-----------
ARR10
--------->
YAB1
--------->
ANAC58
<---------
HSFB2a(1)
---->
DOF2
<---------
ANAC58
<---------
ARR14(2)
<---------
YAB1
--------->
ANAC58
------->
TEIL
<
agaggatggttctagtt
gtttgcgaaaatggcgaatttgcccttcaagttgatgataataaaataaaaaa
cgctagaaggagggttcgaacctccgacct
1583800
----------->
RAV1(2)
--------->
ANAC46
--------->
ANAC58
<---------
ALFIN1
<xxxxxxxxxxxxxxx
smallRNA(le3)
--------->
ANAC46
<---------
ZAT2
<-----
------->
GAMYB
--------->
At4g35610
--------
--------->
MYB46(3)
<---------
At4g35610
--------
<xxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
AHL20(2)
<-------
GAMYB
--------->
ANAC58
<---------
AHL20(1)
<-------
->
HVH21
<---------
ALFIN1
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
AHL20(1)
<-------
xxxxx
smallRNA(le3)
--------->
ZAT2
<---------
ZAT2
<-----------
TBP
--------->
AHL20(2)
xxxxx
smallRNA(le3)
--------->
MYB46(3)
*
TSS
<---------
ANAC46
--------->
ARR11(3)
---------
---------
MYB46(3)
-------->
P
<---------
At4g35610
<---------
TOE2(3)
<---------
YAB1
xxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ANAC46
<---------
ANAC55(1)
<------------
CBF
<--------
tgtggttaacagccacacgctctaaccagctgagctattccagc
tacttgttatgttatgtgtatttatgttttatatattgtcttatcatttattaaat
1583900
---------->
DOF2
<---------
AtLEC2
<---------
ANAC58
<---------
AHL20(2)
<---------
ANAC58
<------------
CBF
<-------
TEIL
--------->
ATHB12
<------
MYB46(1)
-------
CBF
<------
MYB83
->
AHL20(2)
--------->
ALFIN1
->
AHL20(1)
<---------
AtMYB61
--
AHL20(1)
<---------
MYB46(3)
--------->
YAB1
--
AHL20(2)
<------
ZmHOX2a(1)
<-------
TEIL
>
AHL20(2)
--------->
MYB52(1)
--------->
ATHB12
<---------
ARR14(2)
-
AHL20(2)
<----------
DOF2
<---------
AHL20(2)
<---------
TOE2(3)
--------->
DAG2
tgagttattgaatttctttttagtcgaaacggtgtttttttttaattcacttacaaaaaataaggattggtgcatgggaaaggccgattcataacaaatt
1584000
<------
NtERF2
<---------
DEAR3(1)
--------->
ATERF1(1)
<------
NtERF2
<-----------
HVH21
------>
NtERF2
<---------
DEAR3(1)
--------->
DEAR3(1)
<---------
ANAC46
<---------
O2
--------->
O2
------>
NtERF2
--------->
RAP2.3(1)
--------->
ATERF1(1)
<------
NtERF2
<---------
ATERF1(1)
<---------
RAP2.3(1)
<---------
RAP2.3(2)
<---------
DEAR3(1)
<---------
LBD16
----------------->
AGL3
<-----------------
AGL3
<---------
GLK1(1)
------->
GAMYB
<---------
RAP2.6(2)
<------
ZmHOX2a(1)
<---------
AHL20(2)
-------->
P
<---------
ZAT14
<-----------------
AGL1
---------->
DOF2
<-----------
GT1
--------->
ZAT18
<-----------
GT1
<---------
TOE2(3)
gtaggcccattaaaacgaagcccattatcaaccctatatatagtgcggcgtcggagtttttatatttttccaaacaggaattaagaaacccctctagtcg
1584100
<----------
DOF2
--------->
TOE2(3)
<---------
ARR11(3)
--------->
TOE1(3)
--------->
ARR11(3)
------>
MYB46(1)
<---------
CCA1(2)
---------->
ID1
------>
MYB83
<----------
DOF2
<-----------
RAV1(1)
-------->
P
------>
MYB83
----------->
GT1
<---------
CCA1(2)
----
<------
ZmHOX2a(2)
<---------
DAG2
<---------
TOE1(3)
<---------
CCA1(2)
<-------
TEIL
<------
ZmHOX2a(2)
------>
MYB46(1)
<---------
TOE2(3)
------>
ZmHOX2a(1)
<---------
ANAC46
acgatatcgagatcgatccaacctttaccaacgctttatatctcttctaaggtaaaatttgtcgctccttatctctctcactgtttcttagaaaattcat
1584200
<---------
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
<---------
ICU4
--------->
YAB1
--------->
ATHB51
--------->
ALFIN1
<--------
HAHB4
<---------
ANAC58
-------->
HAHB4
<---------
ANAC58
<---------
AHL20(2)
<---------
DEAR3(1)
-------->
ATHB1
<---------
TOE2(3)
------>
NtERF2
<----
<---------
YAB1
<---------
TOE1(3)
--------->
At4g35610
------
<---------
ATHB51
---------->
DOF2
<---------
At4g35610
<-----
--------->
ICU4
--------->
TOE2(3)
<-----------
HVH21
<-----
----->
TOE2(3)
--------->
TOE1(3)
<------
ZmHOX2a(2)
<---------
ANAC46
-----------
cttaattattatatagatagagaaccctaaaagttcaaggttgtatttgcgatcgaaactatcagcggccgtgttccgaaccagttttgaatttcaattt
1584300
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AGI:
At1g05385.1
Description:
photosystem II 11 kDa protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO71168.1)
Range:
from: 1582670
to: 1583717
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g05390.1
Description:
pre-tRNA. tRNA-Asn (anticodon: GTT)
Range:
from: 1583771
to: 1583844
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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