Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         ----------->RAV1(2)                      ------>NtERF2                     --------->ANAC58                     --------->ANAC58                ----------->RAV1(2)                ------>ZmHOX2a(1)                                                        --------->ANAC58                --------->At4g35610                                           ----------->RAV1(1)                <---------At4g35610    --------->LBD16                       --------->MYB46(3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                ------>MYB83 --------->ANAC46          <---------DAG2              --------->HSFB2a(2)                   ------>MYB46(1)          <----------DOF2   <---------ZAT2         <-----------RAV1(1)     ----------->RAV1(1)   ---- ----->ZmHOX2a(1) ----------->HVH21   <---------HSFB2a(2)          ---------->DOF2       --------->ANAC58   tccttcgtctaacttttcctctgacgcctgagcttgtaatccagaaaactcaattgtggccatgaacgaagaagcaccaacaacacatttcaagaaacca  1583300                                                 <---------AHL20(2)                                                --------->AHL20(2)                  --------->ATHB12  <----------DOF2            --------->YAB1        <---------HSFC1(2)                    --------->AHL20(2)         ---------->DOF2          --------->HSFC1(2)       ----------->GT1   <------ZmHOX2a(2)       ----------->HVH21    <---------AHL20(2)   ----------->GT1 ----->ANAC46    <---------YAB1  ------->TEIL  --------->YAB1   ---------->DOF2   cgacgatcaaacaaagatgatgtttggccttgacgaagcttttcatctattttaatttgcaaagtttaaagcagttaaataaaacttgtagataagttta  1583400                                     <---------ICU4                          <-----------GT1---------           --------->WOX13(1)        -------->ATHB1                          --------->ANAC46         <---------ATHB12            --------->ATHB12          --------->ATHB12 ----------->RAV1(1) -  ----------->GT1<---------CCA1(2)  <---------ATHB12         <<<<<<<<<<<<<<<<<LFY           ---------   gaaatcgtgaaatcaatccatctcttataaaaaactaaatcattgaagaaacatgtttgatttcaacattggatgatataaacaacattgacattaaaac  1583500                                                                              <---------ANAC46                                                                              <---------ANAC58                                                         ----------->GT1      <---------ANAC58 >AHL20(2)                                  ---------->DOF2                <---------RAP2.6(2) --------->DOF2                     ---------->DOF2>>>>>>>>>TBF1 <----------DOF2 ->DOF2       ------------------------>ANAC81 <XXXXXXXXXXXXXXXXXXXXMIR847<-----------RAV1(1)        -   agaaaagagttttcaaaaaaaaaaaaaaaaaaacacagaaaagagataaagaagaagaagagtgatactttgacattgtggcttcgatttcatatggtga  1583600                                     <---------GLK1(1)                                     --------->GLK1(1)                          ------>NtERF2                         <---------RAP2.6(2)                         <---------ANAC46                                            --------->CCA1(2)                        --------->RAP2.6(3)                                         <---------ARR14(2)                       --------->MYB52(1)                                           --------->ARR11(3)                      ----------->TGA1        ------->TEIL                     --------->GLK1(2)                      ----------->HVH21    <---------ATHB12              --------->TOE1(2)               --------->DAG2    --------->ANAC46                        --------->TOE2(3)          <------ZmHOX2a(1)      --------->ANAC58                     <---------ARR14(2)   ---------->DOF2 <-------TEIL  --------->ANAC58                     --------->ARR14(2)        ----- ------>TEIL  ---------->DOF2 <---------REM1(2)  <----------DOF2     <------ZmHOX2a(1)         ------   tgcaccaaagtaggagaaaagttcatgacggctacaaggaaacccatgaatctttctgtctgataacaacaggaacctcagaatcagatatagatgaaaa  1583700                                                                                            ------>NtERF2                                                                                           --------->DEAR3(1)                                                                                           ----------                                                                                          <xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        --------->TOE2(2)                                                                                        --------->TOE1(2)                                                                                       --------->MYB46(3)         >>>>>>>ZML2                                                                   <---------HSFC1(2)    <------MYB46(1)                                          --------->AHL20(2)        --------->HSFC1(2)    <---------HSFC1(2)                                      --------->AHL20(2)         <---------HSFB2a(1)    --------->HSFC1(2)                                  <---------AHL20(1)     <---------HSFB2a(1)    <---------MYB46(3)                                  --------->AHL20(1)     --------->HSFB2a(1)    <------MYB83 *TSS                                   <---------AHL20(2)     <---------HSFC1(2)    --------->HSFB2a(1)           <-----------GT1       --------->AHL20(2)     --------->HSFC1(2)    <---------HSFB2a(1)        --------->ARR14(2)    --------->YAB1         <------ZmHOX2a(1) <------ZmHOX2a(1)          <---------ANAC46        <---------YAB1  <xxxxxxxxxxxxxxxxsmallRNA(fl3)  < ---->DAG2     <---------ANAC58<-----------ARR10  --------->YAB1   --------->ANAC58    --------->HSFB2a(1) ---->DOF2     <---------ANAC58<---------ARR14(2)<---------YAB1    --------->ANAC58   ------->TEIL  <   agaggatggttctagttgtttgcgaaaatggcgaatttgcccttcaagttgatgataataaaataaaaaacgctagaaggagggttcgaacctccgacct  1583800                         --------->At4g35610              --------->ANAC46              --------->ANAC58            <---------ALFIN1 <xxxxxxxxxxxxxxxsmallRNA(le3)       --------->ANAC46  <---------At4g35610                                                   <-----       ------->GAMYB     <---------ZAT2                                                      <-------      --------->MYB46(3) ----------->RAV1(2)                                                 --------    <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     --------->AHL20(2) <-------GAMYB--------->ANAC58                                           --------->AHL20(1)  -------- ->HVH21  <---------ALFIN1  <xxxxxxxxxxxxxxxxsmallRNA(s)                 --------->ARR11(3)  <------- xxxxxsmallRNA(le3)      --------->ZAT2<---------ZAT2                 <-----------TBP   <---------AHL20(2) xxxxxsmallRNA(le3)   --------->MYB46(3)    *TSS       <---------ANAC46  <---------AHL20(1) <-------- ---------MYB46(3)   -------->P        <---------At4g35610      <---------TOE2(3)   <---------YAB1 xxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->ANAC46 <---------ANAC55(1) <------------CBF ---------   tgtggttaacagccacacgctctaaccagctgagctattccagctacttgttatgttatgtgtatttatgttttatatattgtcttatcatttattaaat  1583900                                                                           ---------->DOF2                                                                     <---------AtLEC2                                                                     <---------ANAC58      <---------AHL20(2)                                             <---------ANAC58   <------------CBF                                                 <-------TEIL  --------->ATHB12                                               <------MYB83 -------CBF                                                      <------MYB46(1) --AHL20(1)                                                     <---------MYB46(3) ->AHL20(2)                                                     <---------AtMYB61 ->AHL20(1)                                                     --------->ALFIN1      --------->YAB1 --AHL20(2)                                                  <------ZmHOX2a(1)       <-------TEIL -AHL20(2)              --------->MYB52(1)                   --------->ATHB12      <---------ARR14(2) >AHL20(2)   <----------DOF2           <---------AHL20(2)  <---------TOE2(3) --------->DAG2   tgagttattgaatttctttttagtcgaaacggtgtttttttttaattcacttacaaaaaataaggattggtgcatgggaaaggccgattcataacaaatt  1584000                                                  <------NtERF2                                                <---------DEAR3(1)                                               --------->ATERF1(1)                                               <------NtERF2                                              ------>NtERF2                                              <-----------HVH21                                             --------->DEAR3(1)                                             <---------DEAR3(1)                                             <---------ANAC46                                             <---------O2                                             --------->O2                                            ------>NtERF2                                            <------NtERF2                                            --------->RAP2.3(1)                                            --------->ATERF1(1)                                           <---------ATERF1(1)                                           <---------RAP2.3(1)                                          <---------RAP2.6(2)                                          <---------DEAR3(1)                                         <---------LBD16                              ----------------->AGL3                              <-----------------AGL3                               <---------GLK1(1)                             ------->GAMYB<---------RAP2.3(2)             <------ZmHOX2a(1)        <---------AHL20(2) -------->P    --------->ZAT18         <-----------------AGL1        ---------->DOF2   <-----------GT1<---------ZAT14        <-----------GT1 <---------TOE2(3)   gtaggcccattaaaacgaagcccattatcaaccctatatatagtgcggcgtcggagtttttatatttttccaaacaggaattaagaaacccctctagtcg  1584100                    <----------DOF2                   --------->TOE2(3)<---------ARR11(3)                   --------->TOE1(3)--------->ARR11(3)                 ------>MYB46(1)   <---------CCA1(2)      ---------->ID1                 -------->P------>MYB83                 <-----------RAV1(1)                 ------>MYB83  <---------DAG2  ----------->GT1      <---------CCA1(2)            ----             <------ZmHOX2a(2) <----------DOF2<---------TOE2(3)   <---------CCA1(2)          <-------TEIL         <------ZmHOX2a(2) ------>MYB46(1)    <---------TOE1(3)  ------>ZmHOX2a(1) <---------ANAC46   acgatatcgagatcgatccaacctttaccaacgctttatatctcttctaaggtaaaatttgtcgctccttatctctctcactgtttcttagaaaattcat  1584200  Previous    Next  AGI:  At1g05385.1    Description:  photosystem II 11 kDa protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO71168.1) Range:  from: 1582670    to: 1583717    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g05390.1    Description:  pre-tRNA. tRNA-Asn (anticodon: GTT) Range:  from: 1583771    to: 1583844    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version