Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               ----------->GT1             ----------->RAV1(1)                                      ----------->GT1            <---       --------->ANAC46     <---------TOE2(3)            ------>ZmHOX2a(2)                       <--- ----->MYB83--------->MYB46(3)      ---------->DOF2     <------ZmHOX2a(2)                        <--- ----->MYB46(1)           ---------->DOF2              <---------ARR11(3)  ---------->DOF2       <---   cctatcaactcgaaaccacagagccagaaaaaggtttcaaaagtcgcatcaaatcgagatcgcagagtcaaacagtttaaagaatgaaacatcgaaattg  1368400                                                                        -------->P                                                                        ------>MYB83                                                                        ------>MYB46(1)                                                                  ------>MYB46(1)                                           <---------ANAC58       ------>MYB83                                           <---------ANAC46       -------->P                                        ------>ZmHOX2a(2)        --------->MYB55(1)                                       <------ZmHOX2a(2)        --------->DEAR3(1)                                       --------->CCA1(2)        <---------MYB111(2)                                      <---------ARR14(3)        <---------ALFIN1                                      --------->ARR11(3)        <---------MYB46(2)                                      <---------ARR11(3)        --------->AtMYB61                                      --------->ARR14(3)        <---------MYB55(2)                                      <---------ARR14(2)        --------->MYB46(3)                                      --------->ARR14(2)        <---------MYB111(1)                                      --------->AGP1           --------->MYB46(3)                            --------->ANAC58                 --------->AtMYB61                            --------->ANAC58                 <---------ALFIN1                          ---------->DOF2  <---------ANAC58 --------->MYB46(3)                     ---------->DOF2 <---------GLK1(1)    --------->ANAC46 ------ANAC46    ------>ZmHOX2a(1)   --------->GLK1(1)    --------->AtMYB61 ------ANAC58    ==============================HOX2a_HOX2a------->GAMYB<---------ALFIN1 ------AtLEC2    --------->LBD16    ----------->ARR10    <---------MYB55(2)                      <--- ------ANAC58    =============================HOX2a_HOX2a--------->MYB46(3)                     -----   catgaataaaactcgattcctgagaaagaaaagccaaggagatctgcttgtaacttctaaccaccaccaacccctaccctactcaaactcatcaagaatt  1368500                                --------->SPL7                               <---------SPL1(1)                              <---------SPL7                              <---------SPL1(2)                             <---------ANAC58                            <-------TEIL                            <---------------AtSPL3                            --------------->AtSPL8                            ------>ZmHOX2a(2)                            --------------->AtSPL3                           <------ZmHOX2a(2)                                                       <-                           --------->CCA1(2)                                                  -------                          --------->ARR11(3)                                                  -------                          <---------ARR11(3)                                                  <------                          <---------ARR14(2)                                                  <------                          --------->ARR14(2)           <------MYB83                         <--------                         <---------GLK1(1)             <------MYB46(1)                      ---------   ---------->DOF2       --------->GLK1(1)            --------->ALFIN1                    <---------- --------->ANAC58        <---------HSFB2a(1)        <---------ANAC58                     <------NtERF2 --------->ANAC58        --------->HSFB2a(1)----------->HVH21                        --------->DEAR3(1) ------AHL20(2)         ----------->ARR10   <----------ID1      ----------->GT1     --------->ANAC58 ---->AHL20(2) --------->YAB1<---------ANAC58       <---------ANAC58                --------->ANAC58   aaaacgaaagagagcgatgaaaatcgaagatccgtacgatttttgagcgacaaggcttggtgcaagtagtacaaacgagattgagcacggcctcagtgga  1368600                                                                             ----------->RAV1(1)                                                           --------->At4g35610                                                           <---------At4g35610                                                  --------->ANAC58           ======================== <------NtERF2                     ----------->RAV1(2)     --------->ZAT2    <---------ALFIN1 --------DEAR3(1)             <---------ZAT18     --------->ANAC58        --------->ANAC46 -->ZAT18                 ---------->CDC5         --------->ANAC46        ------->GAMYB -->ZAT14              <---------At4g35610       <---------LBD16  --------->SPL7 ---ZAT14              --------->At4g35610      <---------ALFIN1 --------->PCF2<---------ALFIN1 ---ZAT18              --------->ZAT2      <---------ATERF1(1)--------->At4g35610             ------- -At4g35610            <---------ZAT2------>ZmHOX2a(1)     <---------ZAT2 =================MYC_MYB >At4g35610<---------ANAC58  <---------ANAC58  <---------REM1(2)<-----------HVH21<---------TGA1a -RAV1(2)  <---------ANAC58  <---------ANAC58 ------>ZmHOX2a(1)--------->DEAR3(1)--------->TGA1a-----   ctcggcgaaattggagtgagaggtgagctcagcgtgctcctgagcctcctccacggacttcagcagcgtcccacaatcgccacacttgagcgatactcct  1368700                                                                                           <---------ANAC58                                                                                      --------->MYB52(2)                                                                                      <---------MYB46(3)                                                                   --------------->AGL15   <---------ANAC58                                                                   <----------DOF2   --------->SPL7                                                                   <---------------AGL15   <---------ANAC46                                                                  <---------------AGL15   <---------MYB46(3)                                                                  --------------->AGL15 <---------MYB52(1) =====RAV                                                        <-----------------AGL3<-------GAMYB ---->RAV1(2)    <---------ALFIN1                            <----------DOF2        <---------MYB52(1) ->ZmHOX2a(1)  <---------ALFIN1                          <----------DOF2      <---------GLK1(1)<-----   gccatggctacaatctcccactcgcgagacttggtttcacagactcgagactcgattgtctttctttccctttaatggggaagtccgttcgttgcttggg  1368800                                                                   <------------CBF                                                        <---------LBD16                                                      <-----------GT1                             <---------ATHB12     <---------MYB52(1)         <------------CBF                      <---------MYB46(3)         <---------At4g35610      --------->AHL20(2)                      <------MYB83  --------------->AtSPL3  --------->ARR14(2)      <---------AHL20(2)                      <------MYB46(1)         <-------TEIL  <---------ARR14(2)     --------->AHL20(2)    <------ZmHOX2a(1) <---------DEAR3(2)   *TSS  <-------GAMYB ----------->HVH21--------->ATHB12   -- ----ANAC46          <---------DEAR3(1) --------->MYB52(1)--------->LBD16 <---------AHL20(2)  <------   tagagaggaaggaagacatagggtcggttcaatcgttttcagtaccggttcagttgtttccggttctgacattgatataaattgatttaatcggtttaga  1368900             <------------MYB.PH3(1)           <-----------GT1   <---------HSFB2a(1)         <---------MYB52(2)  --------->ZAT2        --------->ANAC58     --------->HSFB2a(1)        --------->ANAC58     <---------HSFC1(2)      >>>>>>>>>NAP--------->MYB46(2)    =======================================MYC_MYB    --------->ANAC58         --------->At4g35610    <---------ANAC55(2)      --------->HSFC1(2)    --------->ANAC46  <---------WRKY12    ======================MYC_MYB    --------->ANAC55(1)      <---------ZAT2    --------->ANAC55(2)  --------->ANAC46    --------->bZIP60(2)--------->MYB52(1)    --------->ANAC46    <---------TGA1a<------MYB46(1)        <------ZmHOX2a(2)    --------->TGA1a<------MYB83          --------->ARR11(3)      <------ZmHOX2a(2)    --------->ANAC58  <---------WRKY38(1)<---------ARR11(3)     <---------ARR14(2)   <-------TEIL   --------->MYB59   <---------MYB52(1)          --------->ARR14(2) ------->MYB59  <---------MYB52(1) <-------GAMYB             <---------TOE1(2)                    --- ---TOE2(3)--------->MYB52(1)<---------At4g35610             --------->SPL7          <----------DOF2-   ttaggcacgtaagtaacggtttggtaaacggagcttccgttaagatcacaccagtttgaatcggacgatccatattgtttcgacccgctttaaaaacaaa  1369000                                                                 ------>MYB83                                                                 -------->P         <---------ZAT14                                    <<<<<<<ZML2         --------->ZAT14                              <---------ARR14(2)       <---------MYB52(1)                             --------->GLK1(2)      --------->LBD16                                 --------->ARR14(2)     --------->LBD16                                  <---------ARR11(1)     --------->ANAC46                                 ------->TEIL   <----------DOF2  ------>NtERF2 <---------ETT(2)                     <---------ARR14(1) --------->ANAC58                                    <---------CCA1(2)                        ------- --------->ANAC58   --------->ARR11(3)        --------->GLK1(2)  ------>MYB46(1)          ------->TEIL --------->ANAC46   <---------ARR11(3)       <---------GLK1(2)--------->MYB46(3)          <---------- ------>MYB52(1)--------->ETT(2)      --------->HSFC1(2) <---------HSFB2a(2)           ----------->GT1 -------->MYB46(3) <---------GLK1(1)  <---------HSFC1(2) --------->HSFB2a(2)     ---------->DOF2   tacccgcccggtactctgtcgatatctctccattgcaagaagcttcaaattctgcgaatctagaaccaactctttttctgtataaaagaatgtaactcat  1369100                                                                        ----------->GT1                                                                       --------->YAB1                                                                    --------->YAB1                                                                   <---------AHL20(2)                                <---------YAB1                     <---------YAB1                 --------->HSFB2a(2)     <---------AHL20(2)       --------->AHL20(2)                - -->ATHB12       <---------HSFB2a(2)<-------TEIL                  <---------AHL20(1)  <---------AHL20(2) -GT1         <----------DOF2 <---------At4g35610                 --------->AHL20(1) --------->AHL20(2)   tggagaggctcaaatactttcagaaatgtttctgatgatacatataatgaaatttcatgactccaaaatataataagaaaaaacaaaattaatggtattt  1369200                                                                                               ------                                                                              <---------ANAC58 <-----                                                   --------->ARR11(3)         --------->YAB1  <------                                            ===============HOX2a_HOX2a        --------->ANAC55(2)                                      --------->YAB1<------ZmHOX2a(2)         <---------ANAC58-------          ------>ZmHOX2a(2)   ---------->DOF2      <---------ARR11(3)      <----------DOF2   -------- ----->ZmHOX2a(2)         --------->ANAC46  <------ZmHOX2a(1)         <----------DOF2        <-------   gatctaatgtgatcgtcaaaaactttcccagcaaaagctattgtaaggaagaagatcaaaactggttttcttctttcctttcgtaatggaaacaaaataa  1369300  Previous    Next  AGI:  At1g04850.1    Description:  ubiquitin-associated (UBA)/TS-N domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50090.1); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain UBA-like (InterPro:IPR009060); contains InterPro domain PUG (InterPro:IPR006567); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449) Range:  from: 1365117    to: 1368843    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g04860.1    Description:  UBP2 (UBIQUITIN-SPECIFIC PROTEASE 2); ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 2 (UBP2) [Arabidopsis Thaliana] (GB:Q8W4N3;GB:Q9MAT4); similar to ubiquitin-specific protease 1, putative (UBP1) [Arabidopsis thaliana] (TAIR:AT2G32780.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67276.1); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) Range:  from: 1369053    to: 1373100    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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