Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->GLK1(2)                                 <---------GLK1(1)                                 --------->GLK1(1)                              --------->ANAC58                          --------->YAB1                     --------->ICU4                                                             <----            --------->MYB52(1)--------->ANAC58                                                 ------         --------->YAB1 <---------WOX13(1)                                                     ------      --------->YAB1 <---------YAB1                  ------>ZmHOX2a(1)                         ------   --------->HSFB2a(2)<--------ATHB1        <----------DOF2                        --------->MYB52(1)   <---------HSFB2a(2)--------->ATHB12    --------->ICU4       --------->YAB1   --------->YAB1-------   tagttctataacaataacagagaatgattgataagaaatctgtaatctttgagtcctaaaatccaaaataatctacaaaaaaacataacagagagagatt  1188100      --------->YAB1  <---------AHL20(2) --------->AHL20(2) ---TEIL------>ZmHOX2a(1)   --------->ANAC46 --->CCA1(2)                --------->ANAC58 --->ARR14(1)               --------->ANAC58                                      <---------HSFB2a(2) --->GLK1(2)  <----------DOF2                                  ---------->DOF2    --------->HSFB2a(2) -->ARR11(1)  ------>ZmHOX2a(1)                              --------->YAB1    <-----------GT1-------   cgatttaatcctaatccttttaaacagagcaagcaagagaaattcaattgagagaaacaaaaatcaaaagctggaaactttttaccagaactcaaatcag  1188200                     --------->ARR11(3)                                                    ----------                     --------->ARR14(3)                                                 --------->ANAC58                     --------->AGP1                                                     --------->ANAC58                     <---------ARR11(3)                                             <---------ANAC58                   ----------->ARR10                                         --------------->AGL15                 ---------->DOF2                                             <---------------AGL15               <------NtERF2                                                 ------>ZmHOX2a(1)              ------>NtERF2                                                 <-----------------AGL3              ----------->RAV1(1)                                           <---------------AGL15             ----------->HVH21                                              <-----------------AGL2            <------NtERF2                                                   --------------->AGL15    <---------ARR11(3) ------>ZmHOX2a(2)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ARR11(3)<------ZmHOX2a(2)                   <---------ANAC58 <-----------------AGL1   <---------GLK1(1) <---------ARR14(3)                   <---------O2     <-----------------AGL3   <---------CCA1(2) --------->ARR14(2)            <---------AHL20(2)      ----------------->AG   --------->GLK1(1) <---------ARR14(2)   ---------->DOF2 <---------ANAC58 <-----------------AG  ---- -->YAB1  <---------DEAR3(1)    ---------->DOF2  <---------YAB1      <----------DOF2<---------ANAC58   agtggatatctctcggcgacaaagatcttcgaatcaaagactgtgaaagttattttagtgacttgactcttctttcttcctattttgggtatgcaaagtt  1188300                                                         <--------ATHB1                                                         --------->ATHB51                                                         --------->YAB1                                                         <---------ICU4               ------->GAMYB                             -------->HAHB4  --------->YAB1           ----------->HVH21                            <---------AHL20(2)  --------->YAB1          ------>ZmHOX2a(2)                             <---------YAB1   <---------ICU4         --------->CCA1(2)                              <---------ATHB51--------->ICU4         <------ZmHOX2a(2)                              --------->ICU4--------->YAB1        --------->ARR11(3)                            --------->YAB1 <---------YAB1        <---------ARR11(3)                         ----------->GT1   <---------AHL20(2)  --------->CCA1(2)                                --------->TOE2(3)--------->AHL20(2)              < --------->ARR11(1)                                --------->YAB1   <---------AHL20(1)              = <---------ARR11(3)                               ----------->GT1   --------->AHL20(1)  ============= >DOF2  --------->AGP1                           ------->TEIL  <---------ZAT18          ---------->DOF2 ------>DOF2--------->MYB52(1)                <---------YAB1   --------->ZAT18     <----------ID1   <   aaagatttgagatctaacggagaccaaaaacaatacccatatgagagtatgaatgttaataattgtgcaatataataatcacaacgagacaaaagtagac  1188400                               --------->YAB1                            --------->YAB1                    --------->ALFIN1                  <---------ANAC55(1)                  <---------ANAC58                  <---------ANAC46                  <---------bZIP60(2)            <---------DDF1                  <---------TGA1a              --------->DEAR3(2)                            <-------                  <---------ANAC58  <---------ANAC46                                         <-------      --------->ANAC46     <---------YAB1     <---------At5g28300                          <------ZmHOX2a(2) ---------DAG2    <---------O2<---------YAB1 <-----------GT1                              <---------ARR11(3) ===========================bZIP_DOF<---------ANAC58           --------->ATHB12           --------->ARR11(3) ===========================bZIP_DOF<---------ANAC58        <----------DOF2           <---------LBD16 ----------DOF2  <-----------------------TaNAC69(2)  <---------At4g35610          <---------AHL20(2)   aactttatccacaactagtggcgtgtgttcttataatagcgttttttttaccgacatctcatctttgatttgctcatctacgattttatcgggatcatgt  1188500                                                                     <---------ZAT14                                                                     --------->ZAT18                 <---------RVE1(1)                                   --------->ZAT14                 <---------CCA1(1)                               --------->DAG2   <----------DOF2                                              ---------->DOF2      <---------CCA1(2)  --------->HSFB2a(1)                                       <---------PCF2     --------->ARR14(1)  --------->HSFC1(2)                                      --------->ZAT18     --------->ARR11(3)  <---------HSFB2a(1)  <-----------TBP                 <---------ANAC58       --------->ARR14(2)  <---------HSFC1(2) --------->AHL20(2)                <---------ANAC58       <---------GLK1(2) ------->TEIL   *TSS <---------AHL20(2)                <---------ANAC46       <---------ARR11(3) --------AtSPL3 <---------ARR11(3)        <---------YAB1 --------->ALFIN1     <---------ARR14(2) --------AtSPL8 --------->ARR11(3)<------ZmHOX2a(2)   --------->ATHB12      ----------->ARR10  <-----   acgaactttctcttgtgagatatttttttataagagatcgaattttgtttgaatgttgagtgggcctaaagcgcagtgaagatactcttatcttcttatg  1188600                                 <---------DEAR3(1)                                <---------ORA47(1)                              ----------->HVH21                            <------NtERF2                           <---------TOE1(1)                          <------NtERF2                                                     ---------                          --------->ATERF1(1)                                             >>>>>>>>>RAP2.2                         ------>NtERF2                              <----------DOF2     --------->ARR11(3)                    --------->ALFIN1          ------->TEIL       <---------ALFIN1       <---------ARR11(3)                 <---------TOE2(3)   --------->MYB55(2)      --------->AtLEC2          --------->CCA1(1)       --------->DAG2   <---------PCF2  <-------TEIL      --------->WRKY18(1)          --------->RVE1(1)      ---------->DOF2--------->ALFIN1<---------MYB46(3)  <-----------HVH21          <---------AHL20(2) ----------->GT1 <---------TOE1(3)  --------->ALFIN1--------->GLK1(2)        --------->GLK1(2) ----YAB1       <-----------GT1<------ZmHOX2a(1)   <---------GLK1(2)<---------DAG2 --------->AHL20(2)   ctagagaaaaaagttttttaacgttggggccgaggacggtggttcatgaactcgattctggtcatgcccacttttgtagaatccattaaatatctaaagt  1188700                                                                                                -----                                                                                             --------                 --------->ARR11(3)                           <---------ARR14(2)            <--------      <----------DOF2                                         --------->ARR14(2)           --------->DAG2     <---------ANAC46                                     --------->YAB1           ---------->DOF2---     <---------ANAC58              <---------ICU4      --------->YAB1        <----------DOF2---------     <---------ANAC58      <---------YAB1        --------->GLK1(2)        <-----------GT1 ---------->DOF2 ->DOF2 ---------->DOF2<---------GLK1(2) XXXXXXXXXXXXXXXXXXXX>MIR1887  <----------DOF2<----------ID1   ctatatggcttaaaggtgagaacttgattctcattagtcattaccaagtagaatctataatcaaaatccactgcttttactttacaaaaggaaaaaggta  1188800         <---------ARR11(3)      --------->ARR14(2)     ---------->DOF2             <---------ARR14(2)                                               --- ----->DOF2                   --------->TOE2(1)                                   <---------ARR14(2) --->GT1 --------->ARR11(3)   --------->TOE1(1)                      --------->ATHB12  ----------->GT1 -------AtSPL8               ------>ZmHOX2a(1)           <---------ANAC58      <---------ANAC46   --- -------->GT1            <---------ARR14(2) <---------AHL20(2)      <---------YAB1--------->ARR14(2) >DAG2--------->DAG2     --------->ARR14(2)<---------YAB1<---------ANAC58     <---------LBD16     ---   aagataaaaaagttctctcaaactttgaatcctcgtataccccttattaatggaccattgcctacggtttatgattcgatttcggatagtcgtaaaatag  1188900                                                       <---------AHL20(2)                                                       --------->AHL20(1)                                                       <---------AHL20(1)                                                    --------->AHL20(2)                                              ----------->GT1         >>>>>>>>>>GT-3b    --------->YAB1 --------->WOX13(1)                           <------MYB46(1)      ----------->GT1     <---------AHL20(2) ------>ANAC58                                <------MYB83    <---------ANAC58         --------->AHL20(2) ------>ANAC46                               --------->MYB59  <---------ANAC58        --------->AHL20(2) ------>ANAC58       ------->TEIL         <---------MYB46(3)  <---------ANAC46----------->GT1   aagcaatctaagttttttggatgtatattttggtgtcaacttggtgtttggttataaaatatttgggtgaagaaaaatagaagtaaaattaaaataatcc  1189000  Previous    Next  AGI:  At1g04400.1    Description:  CRY2 (CRYPTOCHROME 2). Identical to Cryptochrome-2 (CRY2) [Arabidopsis Thaliana] (GB:Q96524;GB:Q42549;GB:Q42603;GB:Q42604;GB:Q8VWL9;GB:Q8VZY9); similar to CRY1 (CRYPTOCHROME 1) [Arabidopsis thaliana] (TAIR:AT4G08920.1); similar to cryptochrome 2 [Armoracia rusticana] (GB:BAC67176.1); similar to cryptochrome 2 [Armoracia rusticana] (GB:BAC67179.1); similar to cryptochrome 2 [Armoracia rusticana] (GB:BAC67178.1); contains InterPro domain Cryptochrome, plant (InterPro:IPR014134); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050); contains InterPro domain DNA photolyase, FAD-binding/Cryptochrome, C-terminal; (InterPro:IPR Range:  from: 1185549    to: 1188516    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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