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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------------
AtSPL3
<---------------
AtSPL8
<----------
DOF2
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(3)
--------->
ARR14(3)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ARR11(3)
------>
ZmHOX2a(1)
>
ANAC46
--------->
ARR11(3)
<-
>
ANAC58
<---------
ARR11(3)
----------->
GT1
<----------
DOF2
<-
>
ANAC58
----------->
ARR10
<---------
AHL20(2)
<---------
ALFIN1
--
-
GT1
<---------
REM1(2)
<-----------
RAV1(1)
<---------
AHL20(2)
<---------
ALFIN1
<---------
AHL20(2)
caagttctacacgatgaagatcctttgttgttgttgtacagaattaatctacttaatttgttataaacttgccccaactcttttcagtgattttttttta
1096500
--------->
YAB1
------>
MYB83
<-------
TEIL
<-
<---------
ATHB12
------>
MYB46(1)
--------->
At4g35610
--
--------->
WOX13(1)
--------->
MYB52(1)
------->
GAMYB
----
--------
AHL20(2)
--------->
ARR11(3)
<---------
MYB55(2)
----
--------
AHL20(1)
----------->
GT1
--------->
TOE2(2)
--------->
MYB46(3)
-------
------->
AHL20(2)
----------->
RAV1(2)
--------->
MYB46(3)
<---------
At4g35610
<------
aaaaatttgggactcaatcaaactccattacacctggtgatattggtttaaaaccaacgtttctgacttcaacagccgagattcaaagacttcaaaacct
1096600
<----------
ID1
--------
HSFB2a(2)
------->
TEIL
------->
HSFB2a(2)
--------->
AHL20(2)
--------->
ANAC58
<---
-->
MYB46(1)
----------->
GT1
<------
ZmHOX2a(1)
--------->
ARR14(2)
-->
MYB83
----------->
GT1
==============================
HOX2a_HOX2a
-->
HSFB2a(1)
--------->
YAB1
---------->
DOF2
--------->
CCA1(2)
<---------
ARR14(2)
---
HSFB2a(1)
<-------
TEIL
<---------
HSFB2a(2)
--------->
LBD16
--------->
ANAC58
------>
ZmHOX2a(2)
tccaaaaaaaaacaaattcataactggttcggaaagataaattgacaaacccgagagagatagaggaacacgaacgcttatagtcgatcgcaaataggcc
1096700
<---------
TOE2(3)
<-----------
RAV1(1)
<---------
TOE1(3)
<---------
TOE2(3)
<--------
--------->
ALFIN1
---------->
DOF2
<----------
DOF2
<---------
ANAC58
-------
DOF2
<---------
HSFB2a(2)
<-----------
GT1
<---------
ANAC58
tttcacttgaggtgtctgtctcaagttcgaattctaaaagttttatggttttttttgtttaactgtgttttatgttgggccaaattgttttttgctttta
1096800
<------
NtERF2
<---------
ATERF1(1)
------>
NtERF2
--------->
RAP2.6(2)
<---------
RAP2.6(2)
<---------
DEAR3(1)
--------->
ATERF1(2)
<---------
ATERF1(2)
--------->
DEAR3(1)
--------->
DEAR3(2)
--------->
AHL20(2)
--------->
RAP2.6(3)
<---------
AHL20(2)
--------->
ATERF1(1)
--------->
AHL20(2)
--------->
SPL7
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
ZAT14
---------->
DOF2
--------->
AHL20(2)
--------->
ZAT14
<-------
TEIL
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AtLEC2
<---------
YAB1
<---------
YAB1
----------->
GT1
--
DOF2
--------->
TCP20
--------->
AHL20(2)
<----------
DOF2
--------->
DAG2
<--
ggcattaaatttagtcgggccggccctgcacataaaattaatatgatgaaatgttttgggtttgatactttgattcatagaaaaagtaaattagtctcta
1096900
--------->
AHL20(2)
<---------
ANAC46
<---------
AHL20(2)
<---------
ANAC55(2)
--------->
AHL20(2)
--------->
DAG2
<---------
AHL20(1)
<---------
TOE2(3)
--------->
AHL20(2)
--------->
ICU4
------------>
MYB.PH3(1)
<---------
AHL20(2)
<---------
YAB1
<----------
ID1
--------->
ANAC55(2)
----------->
GT1
--------------->
AGL15
----------->
GT1
--------->
ARR14(2)
--------->
YAB1
<---------
AHL20(2)
----------->
GT1
<---------
ARR14(2)
-------
ZAT6
<---------
AHL20(2)
<---------
ICU4
*
TSS
---------->
DOF2
---------->
DOF2
<-----
ctgatagtaatttaattaaatactagtatttcattattttgtaa
gaaattttagaaagggaaaaaaaaaaaaggttacgcgaaggaaaccaaaaaccctt
1097000
<----------
DOF2
<---------
DAG2
------>
NtERF2
--------->
DEAR3(1)
--------->
RRTF1(3)
--------->
RAP2.3(2)
--------->
DEAR4(2)
--------->
RAP2.3(1)
<------
NtERF2
--------->
ORA47(2)
--------->
ATERF1(1)
------>
NtERF2
<---------
RAP2.3(1)
<---------
ATERF1(1)
<---------
RRTF1(1)
<---------
DEAR3(1)
--------->
At4g35610
<---------
ZAT2
--------->
ZAT2
<-----
<---------
ANAC46
<-----------
GT1
<---------
At4g35610
<-----------
GT1
<------
-----
DOF2
----------->
GT1
------->
TEIL
<---------
ABI4(2)
<----------
DOF2
<-----------
GT1
tagggacttggatagaaaaaaaaaaaccattttgtgcatcttcttcaagctgcgccgctttctcactcttttttatctctcaaatttgaccttctccgtt
1097100
--------->
HSFB2a(2)
--------->
ARR14(2)
------>
ZmHOX2a(2)
<---------
ARR14(2)
=======================
HOX2a_HOX2a
------>
MYB83
<----------
DOF2
--------->
MYB52(2)
<---------
LBD16
------>
MYB46(1)
----
MYB52(1)
<-------
TEIL
------>
ZmHOX2a(1)
<---------
MYB59
--------->
ANAC58
-
GAMYB
<-----------
RAV1(2)
<-----------
GT1
--------->
TOE2(3)
--------->
ANAC58
gttctttcgcatcgctcag
gttcgtttcgatctcgaattacatctcctacggattcaatatttgttcaacctaattgttcccatttctatcgcacgaaga
1097200
<-----------
RAV1(2)
<---------
At4g35610
-------->
ATHB1
--------->
At4g35610
<---------
ICU4
--------->
ATHB51
--------->
GLK1(1)
--------->
YAB1
--------->
ATHB12
<---------
GLK1(1)
--------->
YAB1
<---------
AHL20(2)
<---------
ZAT2
--------->
GLK1(2)
--------->
ICU4
--------->
MYB52(1)
<-----------
ARR10
<---------
ATHB51
<---------
DOF5.7(2)
<-
--------->
GLK1(1)
----------->
GT1
----------->
HVH21
--
--------->
LBD16
<---------
ATHB12
--------->
GLK1(2)
--------->
MYB59
<---------
ARR14(2)
<---------
HSFB2a(2)
<---------
ANAC58
--------->
ICU4
--------->
ZAT2
----
<---------
LBD16
<---------
YAB1
<<<<<<<<<
RAP2.2
<---------
YAB1
<---------
TOE2(3)
--------->
GLK1(2)
--------->
HSFB2a(2)
<---------
ICU4
<---------
ANAC58
<---------
YAB1
------->
GAMYB
--------->
ARR14(2)
<---------
LBD16
--------->
ICU4
<---------
TOE2(3)
<---------
ICU4
--------->
ANAC55(2)
<---------
GLK1(2)
ttagttcggggaatctaatcgtaatcataatgtttttttagattgcgaatcgaaattattgtgatatttaggtaacggagctcaggtatagaatctgtgt
1097300
--------->
TOE1(2)
--------->
TOE2(2)
----------->
GT1
<-----------
RAV1(2)
--------->
ATHB12
----------->
RAV1(2)
<---------
YAB1
--------
ETT(2)
<---------
REM1(1)
<---------
TOE1(3)
------->
ETT(2)
<---------
At4g35610
<---------
ZAT6
-----
----->
REM1(2)
--------->
At4g35610
<----------
DOF2
<---------
TOE2(3)
<------
ZmHOX2a(1)
gtcgacttgattagggcagatgtagaaaaacctgagaagtagtctttttcagattaactagggttagggttctgatttgatgctcggttttaagcag
gag
1097400
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AGI:
At1g04170.1
Description:
EIF2 GAMMA (eukaryotic translation initiation factor 2 gamma subunit); translation factor, nucleic acid binding. similar to eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative [Arabidopsis thaliana] (TAIR:AT4G18330.2); similar to translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G18720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46572.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80178.1); similar to EIF2 gamma protein [Lactuca sativa] (GB:ABS87380.1); contains InterPro domain Translation elongation factor EF1A/initiation factor IF2ga
Range:
from: 1096945
to: 1099897
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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