Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <------MYB46(1)                                                          -           --------->SPL7  <------MYB83                                                             <     --------->ALFIN1     <---------DEAR3(1)                --------->ATHB12                        - -------TEIL              <---------MYB46(3)                -------->ATHB1                          < ------->CCA1(2)    <-----------HVH21          <---------PCF2    <---------YAB1                    <- -------ARR11(3)   --------->YAB1             <----------ID1--------->YAB1                         -- ---->ANAC58--------->ANAC58                --------->ALFIN1<---------ICU4                   -------- ---->ANAC58--------->ANAC58        <---------ATHB12       <---------ATHB12    <----------DOF2-------   gatacaagtggtggacgacaatggtcagtcggtgttcaatgagcaagtgggacaaggccaaatcattgtgattccacaaggctttgcagtttcaaaaacg  990700                                                                            --------->TOE1(1) -------->At4g35610       --------->WOX13(1)                                --------->TOE2(1) ------MYB46(1)         <---------YAB1                                   --------->YAB1 ---------->GT1        <---------ARR11(3)                          ------>NtERF2 ------MYB83  <---------ANAC58                                    --------->RAP2.6(2) --------MYB46(3)     --------->GLK1(1)            --------->TOE2(3)    <---------ATHB12          <-- ------->MYB55(2)     <---------GLK1(1)   <---------DOF5.7(2)    <---------RAP2.6(2)       --------->ARR14(2) ->MYB52(1)   <---------ANAC46          --------->DOF5.7(2)     <---------At4g35610        <---------ARR14(2) -->RAP2.6(3) <---------ANAC58      --------->MYB52(1)          --------->At4g35610    <---------ZAT14   gctggtgaaacgggtttcgagtggatatcattcaagacaaacgataacgcttacattaacacactgagcggccaaacatcgtacttgagagcagttccag  990800                                     --------->ANAC58                                     --------->ANAC58                                =======================HOX2a_HOX2a                         --------->ZAT18                      <---------ANAC58                                                     <---------ARR11(3)                      <---------ANAC46          <------ZmHOX2a(2)                          --------->ARR11(3)             <-----------HVH21  <------ZmHOX2a(1)            --------->At4g35610         ------>MYB46(1)        ---------->DOF2  <---------ZAT14       --------->ARR11(3)                        ------>MYB83 -------MYB46(3)      <---------ANAC58        <------ZmHOX2a(1)                  ----------->HVH21   tggatgtgatcaaagcgtcatatggagtgaacgaggaagaagccaagaggatcaagtttagtcagcaagagaccatgttgtctatgacaccaagctcttc  990900                     <----------DOF2                    --------->TOE2(3)                                                    ---------->DOF2                <---------ANAC58                                                  <---------DAG2                <---------ANAC58                                                  <----------DOF2             <---------WOX13(1)              <-----------HVH21          --------->YAB1<-----------GT1          --------->AHL20(2)            <-----------GT1       --------->ICU4    ------>MYB83          <---------AHL20(2)         --------->ARR11(3) --------->AHL20(2)      ------>MYB46(1)        <----------DOF2              <---------GLK1(2) <---------AHL20(2)     ------->GAMYB     --------->ARR11(3)              <---------ARR11(3)--------->AHL20(2)    --------->MYB46(3)     <---------ARR11(3)  <---------TOE2(3)  --------->ANAC46---------->DOF2<-----------GT1          -   ttcttaagctctttaattgcttcctttaatgtttttttagattttccagtcactgaaataaataaagatgagactaataaccaacttttcacaaagcttc  991000                                                    --------->YAB1                                                    --------->ATHB12                                                    <---------ICU4              <---------YAB1                                                   <---------YAB1      ----------->GT1                         ------>ZmHOX2a(1)       --------->YAB1  --------->AHL20(2)       --------->ATHB12                   <---------ICU4     <-----------ARR10  <---------ANAC46  <---------AHL20(2) -------->YAB1 --------->AHL20(2) <-------TEIL<----------DOF2    <---------AHL20(2)   <---------ANAC46   aataacaaaatttcagattaaaaattcctactaacatacacatcttagcttttatgattacgttgattttattttgttaaatttgattacgttgattagt  991100                                                                                                  <--                 <------------CBF                                                                <---                <---------ICU4                                                                  =====                --------->ATHB12                                                                -----                -------->ATHB1                                                             <------NtERF2               <---------YAB1                                                              --------->LBD16           --------->AHL20(2)         *TSS                                                --------->ANAC58           <---------AHL20(2)       --------->ZAT6                                        --------->ANAC46          --------->AHL20(2)   <---------ICU4                                  ======================      --------->AHL20(2)       --------->YAB1                                  <----------DOF2 ------      --------->AHL20(1)       -------->HAHB4                             ===========================      <---------AHL20(1)      <---------YAB1                              ---------->DOF2--------->ZAT18      <---------AHL20(2)      --------->ICU4    ---------->DOF2        <---------ANAC46  <---------LBD16     --------->AHL20(2)     --------->YAB1 --------->AHL20(2)  --------->MYB52(1)   ---------->DOF2 --------->AHL20(1)      --------->YAB1 --------->YAB1 >>>>>>>>>TBF1   <---------ANAC55(2)--------->ANAC58 <---------ARR11(3)      <------ZmHOX2a(1) --------->YAB1     <---------ARR14(2)    =================   gtatatattaaattaaaatcattgaaaggataatgataacactaataaaaaaaagaagaagaaggttacggtctcgtaaagctttcaaaagtccgcaacg  991200     --------->ANAC58     <---------O2     --------->TGA1a     --------->ANAC55(1)     ===============bZIP_DOF     <---------TGA1a     --------->ANAC55(2)     --------->O2     --------->ANAC46     --------->ANAC58   <---------ALFIN1                                        <------ZmHOX2a(1) ----ZmHOX2a(2)                                         <---------HSFB2a(2) --------HVH21  --------->LBD16                     <---------SPL7 ==============MYC_MYB                             <---------ANAC58 -->GAMYB<----------DOF2                           <---------ANAC58       <------ZmHOX2a(1) ==============bZIP_DOF                     <-------TEIL--------->HSFB2a(2)    --------->TOE1(2) --->MYB46(3)  --------->ANAC46            --------->GLK1(2)             ----------->GT1 ==============bZIP_DOF                    --------->CCA1(2)           <------ZmHOX2a(1) ==============bZIP_DOF                    --------->ARR14(1)  >>>>>>>>>TBF1  <---------HSFB2a(1)  --   atcacacacgtctttctccgaaactcgtctgagagaggctctgagattcgatgtcgttcgaggaagaagaagaggaggaaacattcgagcatacacttct  991300                                          <---------ARR14(2)                                          --------->ARR14(2)                                       <---------ALFIN1                                      --------->MYB46(3)                                  <---------MYB52(2)                                 ------>NtERF2                                 <------NtERF2                                 --------->LBD16                                --------->RAP2.3(2)                                --------->DEAR3(1)                                --------->RAP2.6(2)                               <------NtERF2                                                    <----                              --------->LBD16                                          ------>ZmHOX2a(2)                              ------>NtERF2                 <---------DEAR3(1)        --------->ARR14(1)                             --------->ANAC46               <---------RAP2.6(2)       <------ZmHOX2a(2)                            <---------LBD16               --------->ALFIN1            --------->CCA1(2)                           ------>ZmHOX2a(2)        --------->CCA1(2)                --------->ARR14(2)        <---------AtMYB61 <------ZmHOX2a(2)        <---------ARR14(2)                --------->AGP1     <-----------HVH21   --------->ARR14(3)       <------NtERF2                      <---------ARR11(3)    <---------ANAC46     --------->ARR11(3)      <---------MYB46(3)                  --------->ARR11(3)    <---------ANAC58     <---------ARR14(3)     <---------ANAC46                     <---------ARR14(2)    <---------ANAC58     <---------ARR14(2)    <---------LBD16------>NtERF2          <---------AGP1   <-------TEIL          --------->ARR14(2)   --------->LBD16 <------NtERF2          <---------ARR14(3)  <---------ANAC46       <---------ARR11(3) <---------LBD16--------->ZAT18           --------->ARR14(3) ------->ALFIN1  <---------MYB52(1)  --------->SPL7--------->ARR14(2)              ----------->ARR10   cgtggtgcgtgaggtctccgtttacaagatcccgccgcgaaccacatccggcggatacaagtgcggcgaatggcttcaatccgataagatctggtctggt  991400                                              --------->ARR14(2)                                              <---------ARR14(2)                                             =========================HOX2a_HOX2a                                     ------>NtERF2                                  <------ZmHOX2a(2)                                  --------->CCA1(2)                                  --------->ARR14(1)                                  ==================HOX2a_HOX2a             <---------ANAC58    --------->ARR11(3)             <---------ANAC58    <---------ARR11(3)             <---------ANAC46    <---------ARR14(3)           --------->ARR14(2)    --------->ARR14(3)                                      ------>ZmHOX2a(1)           <---------ARR14(2)    --------->ARR14(2)                     <---------ZAT2 ------>ZmHOX2a(2)          <---------CCA1(2)      <---------ARR14(2)          <---------ARR11(3)      <---------ARR14(2)         <---------SPL7          --------->AGP1              --------->ARR11(3)      --------->ARR11(3)        <---------ANAC46        --------->GLK1(1)         <---------MYB52(1)         --------->ARR14(2)       <------NtERF2            <---------GLK1(1)        --------->LBD16<---------At4g35610     --------->ANAC46          ----------->ARR10       <---------LBD16  --------->ZAT2<------ZmHOX2a(2)    --------->LBD16     ------>ZmHOX2a(2)    <------ZmHOX2a(1)  <----------DOF2   <XXXXXXXXXXXXXXXXXX    ------>NtERF2  --------->ANAC58=================HOX2a_HOX2a=================================HOX2a_HOX2a  <---------LBD16  --------->ANAC58------>ZmHOX2a(2)<---------GLK1(1)  <---------TOE1(2) <---------HSFB2a(2) ----P<-----------HVH21 ============================HOX2a_HOX2a------>ZmHOX2a(2)<---------ANAC46   agactccgcgtcgtatcgtgcaaggatcgatgcgagatccgcctcgaggattcgaattccggtgatcttttcgcagcttgttttgtggatcctggacgta  991500                 <---------CCA1(2)                     ----------->TGA1                <---------RAP2.6(3)                    ----------->HVH21               --------->RAP2.3(3)                  ------>ZmHOX2a(2)                          ------               --------->RAP2.3(2)                --------->ARR14(2)                        ---------          ---------->DOF2                        <------ZmHOX2a(1)                         <---------GLK1(2)        <---------ZAT14                        <---------TOE1(2)                          <------ZmHOX2a(1)        --------->ZAT14                       <---------LBD16                            ----------->ARR10   <---------GLK1(1)      <-------TEIL  <---------ANAC58                   <---------ANAC58<---------ARR14(2) XXMIR851-5P   --------->DEAR3(1)       <---------ANAC58  <---------ANAC46 <---------ANAC58--------->ARR14(2)   gagagaactctgtagagccgtctctcgattcgtctaggtatttcgttctcaggatcgatgacgggagagggaagtatgcgtttatcgggctaggattcgc  991600  Previous    Next  AGI:  At1g03890.1    Description:  cupin family protein. similar to CRA1 (CRUCIFERINA), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT5G44120.3); similar to Cruciferin PGCRURSE5 precursor (11S globulin) (12S storage protein) [Contains: Cruciferin PGCRURSE5 alpha chain; Cruciferin PGCRURSE5 beta chain] (GB:Q02498); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type (InterPro:IPR011051); contains InterPro domain 11-S plant seed storage protein; (InterPro:IPR006044) Range:  from: 989197    to: 991019    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03900.1    Description:  ATNAP4 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 4). Identical to Uncharacterized protein At1g03900 [Arabidopsis Thaliana] (GB:Q681Q7;GB:Q67YX5;GB:Q94B37;GB:Q9ZWB0); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58600.1); similar to unknown [Populus trichocarpa] (GB:ABK94146.1); contains InterPro domain Adaptin ear-binding coat-associated protein 1 NECAP-1; (InterPro:IPR012466) Range:  from: 991138    to: 993117    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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