Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                           ----------                                                                                           --------->LBD16                                                                                          <---------HSFB2a(2)                                                                                      <---------ANAC58                                                                                 --------->DAG2  ----            --------->DAG2                                                      ---------->DOF2  <---      ----------->RAV1(1)                                                  --------->ZAT14--------->HSFB2a(2)     <---------ETT(1)                                                      <-------TEIL  <---------LBD16     ------->GAMYB                                                 <---------At4g35610<---------ANAC58   --------->At4g35610                                     --------->SPL7<---------SPL7<---------SPL7 --------->YAB1         <---------------AtSPL8            ------>NtERF2<---------------AtSPL8    <--- ----DOF2  ---------->DOF2                             <---------LBD16 <---------------AtSPL3  ------   gaatcatccgacaaaaagtctccatttttgtacaaacagtgagattgtgaagaacaatgcggacgattcagaagcggtacagaaaagggcttccggtaaa  892400                                          <------------CBF                                       ----------->RAV1(1)                                      ----------->HVH21                                    <---------ATERF1(1)                                --------->ATERF1(2)                                <-------PIF5                                --------->DREB2C(2)                                --------->DEAR3(1)                                <---------ATERF1(2)                                ------->PIF5                               --------->DEAR3(2)                             <---------ALFIN1                            <---------ABI4(2)                           --------->RAP2.6(2)                           --------->DEAR3(1)                           --------->RAP2.3(2)                          --------->ATERF1(1)                          --------->RAP2.3(1)                         <---------At4g35610         --------->At5g28300<---------SPL7--------------------->WRI1 >At5g28300              --------->At4g35610 ->GT1  ----------->GT1  <---------ATERF1(1)                                     <---------AHL20(2) ----->ARR11(3)      --------->ANAC46<------NtERF2                       <---------AHL20(2)---------- ------ARR11(3)      --------->ANAC58--------->At4g35610       --------->ZAT6    --------->AHL20(2) --------ARR10       --------->ANAC58<---------At4g35610  --------->HSFB2a(2)   <---------AHL20(2) ----->ARR10       ---------->DOF2 <---------DEAR3(1)     <---------HSFB2a(2)   --------->AHL20(2) --   atcttcgcatcggtaatttcttcaagcagccgcaccggcagcgacattggtcatatagtactcgaacactaagttttaatttttaaattaacatggagaa  892500                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                <------ZmHOX2a(1)                                <<<<<<<<<<<<<<<<<LFY                              xxxxxxxxxxxxxxxxxx>smallRNA(le3)                              xxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ARR14(2)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     -------->P                <----------DOF2              xxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(se3)<---------PCF2              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxx>smallRNA(fl3)      <-----------RAV1(1)            --------->PCF5   xxxxxxxxxxxxxxxx>smallRNA(s)                    --------->TCP15(1)    --------->ANAC58         xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       ----------->HVH21    --------->ANAC58     <---------ZAT6 xxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------MYB46(3)  --------->MYB52(1)    xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  --------->ABI4(2) ->GT1      --------->PCF2 <-----------HVH21   <---------ARR14(2)         --------->ALFIN1        <-- ------->YAB1 *TSS      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxx>smallRNA(s)      -----   atcgtaacgaaatggtcccatggtctagtggtcaggacattggactctgaatccagtaacccgagttcaagtctcggtgggacctttttttttgttggca  892600              <---------ANAC46              <---------ANAC55(2)              --------->ANAC55(2)              <---------ANAC58         -------->HAHB4         --------->ATHB12         <--------ATHB1         <---------ICU4         --------->ATHB51        <---------YAB1                                                                           <---        --------->ICU4                                                                           <---        <---------AHL20(2)                                                                 --------->YAB1        --------->AHL20(2)                                                                <---------YAB1        <---------ATHB51                                                                --------->YAB1       <---------AHL20(1)                                                            --------->YAB1      --------->YAB1                             <---------AHL20(2)                  <---------ICU4 --------->ANAC58                              <----------DOF2                       -------->ATHB1 --------->ANAC55(2)                         ---------->ID1                         --------->AHL20(1) --------->ANAC55(1)                     ------>ZmHOX2a(2)                          --------->ICU4 ----------->GT1                       --------->ARR14(2)                           --------->AHL20(2) <---------ANAC55(2)                   <---------ARR14(2)                           <---------AHL20(2) --------->ANAC58     <----------ID1   <---------ARR11(3)                        --------->AHL20(2) --------->ANAC46   --------->YAB1     --------->ARR11(3)               <---------ZAT6 <---------YAB1 -------ATHB12<---------ANAC58         <---------AGP1           <<<<<<<<<<<<<<<<<LFY<---------YAB1 ---->WOX13(1)----------->GT1         <---------CCA1(2)    <-----------GT1       <---------AHL20(2)   atcacgtaaaataattgcgtaattacaacaagttttttttggatcttgtctttatttgttttctctgtacattggtgttacaaaaaattattatgatagc  892700                                <---------MYB52(1)                               --------->TOE2(3)         --------->AHL20(1)                              ----------->GT1            <---------AHL20(2)                  --------                              --------->ANAC55(2)        <---------ARR11(3)                --------->At4g35610                    <---------WRKY38(1)                  <---------AHL20(1)                <---------At4g35610                    <---------WRKY12                     --------->ARR11(3)              <------ZmHOX2a(1)    <---------TOE2(3)         <---------ANAC55(2)        --------->AHL20(2)   <---------ARR11(3)    <---------TOE1(3)       <-----------GT1             --------->AHL20(2)    --------->ARR11(3) -------DOF2        <---------WRKY45                  --------->AHL20(2)     <------ZmHOX2a(1)  ----- ------DAG2        --------->WRKY18(1)   --------->AHL20(2)          ------->TEIL    <<<<<<<<<MYB98   tttattagggttttttttttggtcaacgaattacgttattagattaaaaatacaaaaaatatattcaaatgtatttgaaggatttttgttaggagctgta  892800                            --------->ZAT14                             <---------MYB52(1)                            <---------ZAT14                     <---------ARR14(3)                            <---------ZAT18                     --------->ARR14(3)                          --------->ANAC46        --------->ANAC58     <-------GAMYB                        --------->ANAC58          --------->ANAC58     <---------At4g35610                        --------->ANAC46         --------->SPL7 <---------ARR11(3)           <-------                      --------->ANAC46         *TSS       <---------TOE2(3)                 ---------                    <---------ALFIN1        --------->ALFIN1    --------->ARR11(3)        <----------                   <---------REM1(2)      --------->At4g35610  <------MYB46(1)    --------->ANAC46 --->GT1<----------DOF2 --------->ANAC58  <---------At4g35610  <------MYB83       <-----------GT1 ----->DOF2       ------>ZmHOX2a(1)     <-----------RAV1(2) <------ZmHOX2a(1) --------->CCA1(2)------   aagtttttgtctttagcctcctacacacactacacttggaagtcagatggggacggaattgaggaaggtcttcagttgggatataaacaacttgtcggac  892900                                        <-------GAMYB                                        <------NtERF2                                        --------->ATERF1(1)                                       --------->MYB55(2)                                       <---------ATERF1(1)                                       ------>NtERF2                                       <---------DEAR3(1)                                       <---------MYB46(3)                                      <---------ANAC58                                      <---------ANAC46                                      <---------ANAC58                                      <---------DEAR3(1)                                     <---------LBD16                                     --------->ATERF1(1)                                     <------NtERF2                                    ------>NtERF2                                    <---------RRTF1(1)                                    <---------ATERF1(1)                                    <---------ERF1                                    <---------DEAR4(2)                                    <---------ORA47(2)                                    <---------RAP2.6(1)                                    <---------RAP2.3(1)                                   <---------ATERF1(2)                                   <---------ANAC46                                   --------->ATERF1(2)                                   <---------ANAC58                                   <---------RAP2.3(2)                                   <---------RRTF1(2)                                   <---------RAP2.6(2)                                   <---------ANAC58                                   <---------RRTF1(3)                                   <---------DREB2C(2)     ------>MYB46(1)               <---------DEAR3(1)     ------>MYB83                  <---------RAP2.3(3)  --------->MYB46(3)              <---------ABI4(1)  <---------HSFC1(2)              --------->ATERF1(1)  --------->HSFB2a(1)           --------->ALFIN1  <---------HSFB2a(1)         --------->TGA1a                              <----------DOF2  --------->HSFC1(2)          <---------O2        --------->At5g28300     --------->YAB1 --SPL7                       <---------TGA1a    ----------->GT1       <---------CCA1(2)  <---------DAG2 >ETT(1)                      --------->O2--------->ALFIN1   --------->ANAC58     <----------DOF2 -HVH21                 ------>ZmHOX2a(1)<---------PCF2      --------->ANAC58  <---------YAB1 ------- --->SPL7   --------->DAG2    ==================MYC_MYB <----------ID1 ------>ZmHOX2a(1)  <----------DOF2   gagaaccatccgataaggtcgaagtccttctcaagtggcggcgggtgcgaatggtaaatcgacaagactcatcctatctttatgctttttagctttacgc  893000                                                                                        ---------->ID1                                                                                    --------->ANAC55(2)                     <----------DOF2                                                <---------ANAC55(2)               <-----------GT1                                                 --------->YAB1            <---------GLK1(1)                                                  <---------ICU4           <---------ARR11(3)                                                 <---------YAB1       ---------->DOF2     <---------MYB52(1)  <---------YAB1               --------->YAB1 -->ANAC46 --------->ARR11(3)               <---------YAB1       -------->P<---------YAB1   gaattgtctaaaagatttcacaactttcggttttgtctctaggtgtattattcttcatcccaagggctaccctggttatgataatcacttgtctctattt  893100                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                               ------                   -------->ATHB1                                                              ------                   <---------ICU4                                                              <-----         ------>MYB83                                                                          ------         ------>MYB46(1)                                                                      <------       <---------MYB111(1)                                                                    <------       <---------MYB46(2)                                                                  <---------ZAT14       <---------MYB59                                                                --------->ZAT2-     ------->TEIL  --------->ATHB12                                           --------->LBD16 ------- --------------->AtSPL8                            <----------DOF2          <---------LBD16--------->ZAT14 ------->TEIL     <---------ATHB12    --------->DAG2                        --------->RAP2.6(3)<----- --------------->AtSPL3              ---------->DOF2         <---------MYB52(1)     ------->GAMYB---- <---------------AtSPL3        <---------AtLEC2    <---------DAG2        --------->WOX13(1)<---------At4g35610   ctgaacgtacctaatcttgaatcattgagacttggatggaaaaggagaactcgctttttcttcgttattttgaatcaatccggcaacgagctctgcagat  893200         <-----------GT1        <---------ICU4        --------->YAB1       --------->ICU4     <---------ICU4 --ZmHOX2a(2) ---->GLK1(1)                                                       <---------WOX13(1) ----ARR14(2)                                                     --------->ATHB12 --->ARR14(3)                                                   <--------P --->ARR14(2)                                                 <------MYB83 ----ARR11(3)                                                 <------MYB46(1) --->ARR11(3)                                               <---------WOX13(1) ---GLK1(1)                                               --------->ATHB12             ---------->DOF2 ---At4g35610                                            <---------YAB1        --------->ICU4 -------------------->WRI1                           --------->ATHB12        ---------->DOF2 -->At4g35610                 <----------DOF2      <---------WOX13(1)     --------->AtLEC2      <---- ----ARR14(3)         <-----------GT1           <---------YAB1<---------MYB46(3)--------->YAB1<------ -->ZmHOX2a(2)    <----------DOF2              ------>ZmHOX2a(2)<---------WOX13(1)   <---------YAB1   cccctagtaattatcaacttctttttactcttcttttttatgtgtctgatctcattgatttgattggttgattgatatgcaaagatgatcaaagctgttt  893300  Previous    Next  AGI:  At1g03560.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to EMB2745 (EMBRYO DEFECTIVE 2745) [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24107.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 890156    to: 892410    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03570.1    Description:  pre-tRNA. tRNA-Gln (anticodon: CTG) Range:  from: 892514    to: 892585    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03580.1    Description:  pseudogene, meprin and TRAF homology (MATH) domain protein -related, weak similarity to ubiquitin-specific protease 12 (Arabidopsis thaliana) GI:11993471; contains weak hit to Pfam PF00917: MATH domain Range:  from: 892847    to: 894052    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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