Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------GLK1(1)                        --------->GLK1(1)                     <<<<<<<<<<E2Fb                    --------->LBD16                   <---------ANAC46                   <---------LBD16                  <---------LBD16                              --------->TOE1(2)             --------->ATHB12  --------->MYB46(3)             --------->MYB46(3)              <------           <---------WOX13(1)  <---------ATHB12             <---------ARR14(2)---------->DOF2 -------          <---------AtLEC2    ------>MYB46(1)               ------------------------>ANAC81   -------          <---------ANAC58    ------>MYB83               >>>>>>>>>TBF1   --------->DAG2    *TSS          <---------ANAC58    -------->P         --------->ZAT18        ---------->DOF2   <----------DOF2   tcaacggtttttgcttgattagcgggaaatccaaccatggcaagaagagagagcgcgaagaagaaccagcgaagaaaagtgaaagaacatgactttcgag  883400          <------NtERF2          <---------At4g35610          --------->At4g35610         <<<<<<<<<AtERF-4         <<<<<<<<<AtERF-2         ------>NtERF2         <<<<<<<<<AtERF-1         <---------ERF1         <---------RAP2.3(1)         <<<<<<<<<AtERF-5         <<<<<<<<<AtERF-3        <---------DEAR3(1)        <---------RAP2.6(2)                                            <---------TOE1(3)        <---------ATERF1(2)                                            <---------TOE2(3)        <---------RAP2.3(3)                                         <---------MYB52(1)        <---------RAP2.3(2)                                       <---------ANAC55(2)        --------->ATERF1(2)                                       --------->ANAC55(2)        <---------ANAC46     --------->At4g35610                 <-------TEIL                     <--       --------->RAP2.6(3)   <------NtERF2     <------NtERF2    --------->CCA1(2)                <---     --------->ALFIN1        <---------ZAT2   ------>NtERF2     --------->ARR14(1)               <--- ---------->DOF2             <---------At4g35610               --------->ARR14(2)           <-------- ---HSFB2a(2)         ---------->DOF2     --------->DAG2       --------->ARR11(1)           <-------- -->HSFB2a(2)        <---------AHL20(2)  ---------->DOF2       <---------ARR14(2)        <---------ZAT14 -->HSFC1(1)       <-----------TBP      ---------->DOF2      <---------TOE1(2)    --------->At4g35610   aattaaagtggcggctaagttatataaaggcagctattttagcaaaggcgcgagggtttatcgcagatacgttagggttttaagagcagagagtacttgg  883500                                                  <---------At4g35610                             ---            --------->ALFIN1                      <---------CCA1(2)                            <-----  ---------->ID1  <---------ALFIN1             <-------TEIL                            <---------AHL20(2) --------DOF2    <------NtERF2                <---------MYB52(1)                       --------->AHL20(2) ------ANAC58   ------>NtERF2              --------------->AtSPL3   <----------DOF2   <---------AHL20(2) ------ANAC58<---------MYB46(3)          <-----------GT1      ----------->RAV1(2)<----------DOF2 ---- -ANAC58    <---------DEAR3(1)     <---------TOE1(3)        <---------ALFIN1<----------DOF2<---------AHL20(2) -ANAC58    <---------AtMYB61      <---------TOE2(3)     --------->ANAC46<-----------GT1   --------->AHL20(2)   ctttggctctcttggtggtgccacttccctctcaattagggtttagccgttcatctctccctccacctgtctttttttcttttctttatttattttttta  883600                     ------>ZmHOX2a(1)                    --------->TOE2(3)----------->GT1                                                <                   <---------ICU4--------->WOX13(1)                                                --         <---------AHL20(2) --------->AHL20(2)                                                     <-        --------->AHL20(2)  <---------AHL20(2)                        --------->ARR11(3)          <--        <---------AHL20(2) --------->ICU4                             <---------ARR11(3)  -----------    <---------AHL20(2)   --------->YAB1                       <---------DAG2             ------------    --------->AHL20(2)  <---------YAB1  --------->YAB1<---------ARR11(3)                 ------------ ------>YAB1  --------->AHL20(2)<---------AHL20(2)    --------->ARR11(3)                 ------------ ------GT1    <---------AHL20(2)--------->AHL20(2)---------->DOF2     --------->GLK1(2)<-----------GT1 ------>ID1  --------->YAB1<---------YAB1  --------->AHL20(2) <----------DOF2 <---------ICU4   <-----   tcgtatttattttaattttaatccttataattaataaatcagttataaaatataaagatgtctactttacaaaatctacataattagatttaccaatttg  883700                                                                             --------->At4g35610                                                                       <---------ATERF1(1)     ------------>CBF                  ------->TEIL                    ------>NtERF2 ---------AHL20(2)              <---------MYB52(2)                  <---------ANAC58 ------->AHL20(2)              --------->ANAC46                     <---------ANAC58 --------AHL20(2)              --------->ANAC55(2)                 <-----------RAV1(1) -------WOX13(1)           <---------AHL20(2)                  <------------CBF ---->AGL15                --------->YAB1                     <---------MYB46(3) >CBF<---------YAB1      <-----------TBP         <------------CBF  --------->ALFIN1 ----->AGL1          <----------DOF2 ------->GAMYB          <---------MYB52(1)    ------->TEIL ------ ----->AG            <---------DAG2 <---------MYB52(2)     --------->LBD16------>NtERF2       ------>ZmHOX2a(1) ----YAB1       <---------MYB52(1)--------->MYB52(1)     <---------LBD16--------->ATERF1(1) ---------   attaattttcaatgttccattagctttatttataagtaacgaacttggaagaattgttcaccggtgattgtggtgcctccgatgaatctcatcatcctga  883800                                                     <---------At4g35610                                                     --------->At4g35610                                           <---------ARR11(3)                                      <---------MYB52(1)                            <----------DOF2                                      <------NtERF2  --------->ZAT2           ------>ZmHOX2a(1)                                     ------>NtERF2   <---------ZAT2       <---------ARR14(2)                                     <---------RAP2.6(3)                  --------->ARR14(2)                      <----------DOF2<-----------HVH21      --------->ANAC58 <---------LBD16                --------->ANAC58    --------->RAP2.3(2)     --------->ANAC58----------->RAV1(2)     <                --------->ANAC58    --------->RAP2.3(3)     --------->ANAC46------>ZmHOX2a(2)       -                --------->ANAC46    --------->DEAR3(1)    ------>NtERF2 --------->LBD16             -                --------->ANAC55(1) --------->RAP2.6(2)  ----------->HVH21<---------GLK1(2)         <              <---------ALFIN1     --------->RAP2.3(1)   --------->DEAR3(1)<------ZmHOX2a(2)      <--             <---------REM1(2)   --------->ANAC46 ------>ZmHOX2a(1)    --------->LBD16            <--           <---------WRKY12      --------->ANAC58 =================================HOX2a_HOX2a  <---- ---->DOF2--------->WRKY18(1)    --------->ANAC58 <---------At4g35610 <---------LBD16 ----------->GT1 -->RAV1(2)<---------WRKY38(1)----------->HVH21   ================================HOX2a_HOX2a -------   agcgccatttcagtcaacacgcctctttatgtctcacgccgtcaatttcttcctctgctccgacgaaacaatcccggatcctggagctttgtaaattggg  883900                                                         ------->GAMYB                                                        --------->ANAC58                                                    --------->LBD16                                                   --------->ANAC58                                                   --------->ANAC46                                                   --------->LBD16                                                   --------->ANAC58                                                  --------->LBD16                                               <------ZmHOX2a(2)                                              <---------ARR11(3)                                              --------->ARR11(3)                                 ===============MYC_MYB --------->ANAC46                                 ------->GAMYB<---------ARR14(2)         --------->ANAC58       <---------ALFIN1  <---------LBD16      --------->DEAR3(1)       <---------REM1(2)------>ZmHOX2a(2)  ----------->HVH21    ===============================HOX2a_HOX2a ---------ZAT2         ================================HOX2a_HOX2a -------->ZAT2         ------>ZmHOX2a(1)      --------->ARR14(2) -------->At4g35610   --------->TOE2(3)      --------->GLK1(1)   <---------DAG2               ------- ---------At4g35610  ------>ZmHOX2a(2)  ----------->RAV1(2) ---------->DOF2                ---------- -------WRKY12      <------ZmHOX2a(2) --------->TGA1a   --------->ANAC58                --------->AtLEC2 -------WRKY38(1)  <---------ARR14(2) ===========================MYC_MYB                --------->ANAC58 -------HVH21      --------->ARR14(2) =================================bZIP_DOF         --------->ANAC58 -->MYB59--------->ANAC58  --------->ANAC46  <---------GLK1(1)   <----------DOF2        --------->ANAC46   tcagctcaccgaagccattcggatcctaaactcaacacactcgtctgagatccccgcaacgccaaagctttatgcctctctcttgcaaacatgcaacaaa  884000                                                    --------->HSFB2a(2)                                                    <---------HSFB2a(2)                                                 <---------ARR14(2)                                                 --------->ARR14(2)                                       <-----------HVH21                                      <---------bZIP60(1)                                      <---------ETT(2)  --------->MYB52(1)                                      ----------->GT1  --------->ARR14(2)      <---------DAG2                  <---------ANAC46 <---------ARR14(2)                   ---------      <----------DOF2      <---------ANAC58 --------->ARR14(2)                              <-------- --->DOF2                  <---------ANAC58 <---------ARR14(2)                 --------->ZAT2 ------- ->RAV1(1)                <-------TEIL--------->bZIP60(1)                      --------->At4g35610   gtcttctcctttatccatggcattcagtttcatgcccatgtcgtcaaatcgggtctggaaacggaccgaaacgttgggaacagcttgctctctctgtact  884100                                                           ------>NtERF2                          ---                                                          --------->RAP2.6(2)                   <----                                                          --------->ANAC46                     <-----                                                          --------->ANAC58                     ------                                                          --------->ANAC58                   --------                                                  <-----------HVH21                        --------->ANAC58                                                <-------TEIL                               --------->ANAC58                                              <---------GLK1(2)                            <---------ANAC55(2)                                              <---------ARR14(2)                           --------->ANAC55(2) >ZAT14                                       --------->ARR14(2)                          <-------TEIL -ZAT14                                       --------->ARR11(1)  <---------ANAC46      <---------ARR14(2) >TEIL                   <---------LBD16   <--------P---------->DOF2 <---------ZAT18    --------->ARR14(2)   tcaagttgggacctggtatgagggagactcggagagttttcgatggtagattcgtcaaagacgccatctcgtggacttcgatgatgtctggatacgttac  884200         --------->ANAC58         --------->ANAC55(1)                                                                <--------         --------->ANAC46                                                                   <--------         <---------ANAC55(2)                                                             <---------TOE1(3)         --------->ANAC58                                                            --------->At5g28300 ---------->DOF2                                                                     <-------GAMYB ------>LBD16                                                                       <---------DEAR3(2) -----ANAC46              --------->ALFIN1                                          <---------MYB46(3) ----DOF5.7(2)      <----------DOF2                                                <---------DEAR3(1) --->MYB52(1)      <-------GAMYB                                                <---------DEAR3(1)<-- ->DOF5.7(2) ---------->DOF2                    <---------AtMYB61     <---------TOE2(3)  <---------TOE2(3)   cggtaaagaacacgttaaggcgcttgaggtgtttgtggagatggtgagttttggtttggatgcgaatgagtttacgttgtcttcggcggttaaggcttgc  884300  Previous    Next  AGI:  At1g03530.1    Description:  ATNAF1/NAF1. similar to hypothetical protein [Vitis vinifera] (GB:CAN75706.1); contains InterPro domain NAF1 (InterPro:IPR008696) Range:  from: 880497    to: 883391    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03540.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24115.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75707.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 883782    to: 885611    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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