Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                  <--                                                                                  --------->KAN1  <--                                                                                 <---------ARR11(3)==                                                                             ---------->DOF2    -----               <---------At4g35610            ---------->DOF2                ========================         <----------DOF2                --------->ZAT6                 <----------DOF2       ------>ZmHOX2a(1)        <---------DOF5.7(1)          <---------KAN1                    ============================== -------->ZAT2 --------->At4g35610<------NtERF2                       <---------DOF5.7(1)    -------- -------->At4g35610            <------ZmHOX2a(1)  ----------->RAV1(1)--------->At4g35610   --------->SPL7(1) ---------At4g35610         <-----------RAV1(2)  --------->MYB46(3)  --------->ZAT2      <-----------HVH21 ------->GLK1(2)           XXXXXXXXXXXXXXXXXXXX>MIR390A/B       --------->ZAT6   --------->ARR11(3)--   gaagctgagccctttgcagctctataagcttcaggaggcataacaccataaaccacagagacattaacaccagctttctcaaagacattcccgtcctgca  870800                <---------ATERF1(1)               ------->GAMYB               --------->DEAR3(1)               --------->ANAC58               --------->RAP2.6(2)               --------->DREB2C(2)       --------->KAN1       --------->YAB5--------->AtMYB61  =====================MYC_MYB  --------->ANAC46 <---------ATERF1(1)  --------->ANAC58--------->DEAR3(1)  --------->ANAC58<---------ALFIN1  --------->TGA1a--------->ERF1 -------->ANAC46--------->ABI4(1) -------MYB52(2)------>NtERF2 -------ALFIN1 --------->ANAC58               <----------DOF2 ===========MYC_MYB------>NtERF2        <---------ARR11(3) ------>RAV1(1)--------->ANAC46      ------>MYB46(1) ===========bZIP_DOF <---------ALFIN1------>MYB83 ===========bZIP_DOF--------->MYB46(3)  --------->ARR11(3)  --------->DEAR3(1)              <<<<<<<<<TAC1 ->AtLEC2      --------->DEAR4(1)  --------->AtMYB61     <------ZmHOX2a(1)   <---------WOX13(2) <---- ----->GAMYB  --------->MYB46(3)   <---------MYB59   --------->TOE1(2)       --------->WOX13(2) <----   acacacgactgattccaccgccaccaccaggtcgagaccaaacatcttctttaaacttaggaccgccttctatagcttcaattgcatcacaaacactgtc  870900                                                                        <---------ARR14(2)                                                                        --------->RVE1(2)                                                                        --------->ARR14(2)                                                                        --------->GLK1(2)                                                                    --------->YAB1                                                                   --------->At4g35610                                                                   <---------At4g35610                                                                --------->TGA2(2)                                                               <-----------TGA1                                                              ===============================bZIP_DOF                                                              --------->bZIP60(1)                                                              --------->ANAC58                                                              --------->TGA1a                                                              <---------O2                                                              --------->O2                                                              >>>>>>>>>>HY5                                                              <---------TGA1a                                                              --------->TGA2(1)                                                              <---------bZIP60(2)                                                              --------->bZIP60(2)                                                              <---------bZIP60(1)                                                              <---------TGA2(1)                                                              ===============================bZIP_DOF                                                              <---------ANAC55(2)                                                              <---------ANAC46                   <---------HSFB2a(2)                        --------->ANAC58           <---------YAB5                      >>>>>>>>>TBF1  --------->ANAC55(2)           <---------ATHB12                 >>>>>>>>>TBF1    ----------->STF1                 <------           <---------YAB1                >>>>>>>>>TBF1       <-----------STF1            --------->DOF5.7(1)   --------->DEAR3(1)              --------->ANAC58        ----------->HVH21           ---------->DOF2 <---------At4g35610               --------->ANAC58        ----------->TGA1       ---------->DOF2 --------->At4g35610             --------->MYB52(1)      <---------ANAC58        <------ZmHOX2a(1) -----ANAC58--------->YAB1      ----------->HVH21        <---------ANAC58      <---------TOE2(3) -----ANAC58<---------ICU4      ----------->TGA1   --------->DOF5.7(1) <---------GLK1(2)--------->DOF5.7(1)   ttgagcagccctaatcatagtctcgaaacgagccctgacggaagaagaagaagaagatggagtgacgtcatcagaatccctaaggaaagtaaagggtcgt  871000                                                                             <---------KAN1         <---------HSFC1(2)                                                 --------->GATA12         --------->HSFC1(2)                                                 --------->RVE1(2)         <---------HSFB2a(1)                                                --------->GLK1(2)         --------->HSFB2a(1)                                                <---------GATA12        --------->ARR14(2)                                    --------->ATHB12     --------->HSFB2a(2)                                     <---------YAB1 <---------ARR11(2)     <---------HSFB2a(2)                           <------MYB83 <---------WOX13(1)    <---------LBD16                                ----------->GT1          --------->ARR14(2)    <---------ANAC46 <---------WOX13(2)            <------MYB46(1)          <---------ARR14(2)   <---------LBD16   --------->WOX13(2)           <---------TOE2(3)        <---------GLK1(2) ---MYB46(3)  <----------DOF2                     --------->MYB59 ----------->HVH21 <---------ZAT14   tcagtttcgggaacttctttctcaattgagactgaacatcgcaaggcgagattaggtttatttctgattggacgggagaatctgagagtagagggattgg  871100                                                                                          <---------RVE1(2)                                                                                ------>ZmHOX2a(2)                                                                              --------->GATA12            --------->YAB5                                                    <---------RVE1(2)  <---      --------->YAB5               --------->TOE1(2)                          <---------GATA12   ----   --------->YAB1               ---------->DOF2                         --------->ICU4    <---------GATA12   --------->YAB5         --------->DOF5.7(1)                      --------->ANAC58       --------->GATA12   <---------ICU4        --------->DOF5.7(1)     <------ZmHOX2a(1) --------->ANAC58  <---------KAN1  <---------KAN1       ---------->DOF2     --------->DOF5.7(1)   <---------At4g35610--------->ARR14(2)  --------->ICU4    <------ZmHOX2a(1)  <------ZmHOX2a(1)         --------->At4g35610<---------ARR14(2)   gagaataatgaagacgatgagaggagaaaggagcgaaagtaggagaagagaggagagtcgacgagtgagaagccatgtttgatccgaatttggatttgat  871200                                                                                 --------->WOX13(2)                                                                 -------->ZAP1   <---------WOX13(2)                                 --------->YAB5                 <---------At5g28300     --------->At4g35610                                 --------->YAB1                <---------WRKY18(1)      <---------At4g35610              --------->ICU4 <---------AHL20(2)                <-----------GT1 <---------AHL20(2)              <---------YAB1--------->AHL20(2)            <---------RVE1(2)   --------->AHL25(3)            --------->YAB5 --------->AHL12(2)           <---------ATHB12    <---------DOF5.7(1)            *TSS         <---------RVE1(1)            <---------At4g35610  <----------DOF2    >>>>>>>>>TBF1       <---------RVE1(2)           <---------ZAT14       <---------DOF5.7(1) ------At4g35610        <---------ARR11(3)          --------->ZAT18   <---------DOF5.7(1)         --- ----->At4g35610        --------->ARR11(3)        <---------SPL7(1)  <----------DOF2<-----------GT1   gctgaagaagaagatgatgatggagagatattaaatgataagaagtcttcgtcgtccactgattttgaccgctcttcctttttatttaacagctcaaggt  871300                                                                                          --------->WOX13(2)                                                                                   <---------ANAC58                                                                                   <---------ANAC58                                                                                   <---------ANAC46                                                                                   <---------RAP2.6(2)                                                                             <---------YAB1                                                                            <---------AHL12(3)                                                                            <---------AHL25(1)                                                                            --------->AHL25(2)                                                            ------>MYB83    --------->AHL12(3)                                                          --------->AtMYB61 <---------AHL25(3)                                                    --------->ANAC46        <---------AHL25(2)                                                    --------->RAP2.6(2)     --------->AHL25(1)                                            <---------AHL25(3)              <---------AHL20(2)     <-                                            --------->AHL20(2)              --------->AHL20(2)     --                                            <---------AHL20(2)             --------->AHL20(2) <------MYB46(1)                                            <---------AHL12(3)           <---------WOX13(2)   <------MYB83                                            <---------AHL25(1)       --------->ANAC58     <---------WOX13(2)                                            --------->AHL12(1)       --------->ANAC58   --------->AHL25(3)                                            <---------AHL12(1)       --------->ANAC46 <----------DOF2                                            --------->AHL25(1)       --------->ANAC55(1)<---------AHL25(1)                                            --------->ATHB51------>MYB46(1)<---------AHL25(3)--------                                           <---------AHL12(1)        --------->ANAC55(2)<---------AHL20(2)           --------->ARR11(2)              --------->AHL25(3)        <---------ANAC55(2)--------->AHL25(1)           <---------ARR11(2)              --------->AHL12(1)   --------->ANAC46  <---------LBD16 <-- ------->DOF2                              <---------YAB5 <---------MYB59--------->WOX13(2)----------   aaaagaaaacacagttccagtcttctcagactaaaccacttctgaattatttagccgaaaccaaaccagacacgaaattaaaattgcggtttaatttggt  871400                --------->ANAC58       --------->ARR11(3)       --------->ARR14(3)       --------->ARR14(2)                                                               --------->ZAT18       <---------ARR14(2)                                                             --------->ANAC58       <---------RVE1(2)                                                              --------->ANAC55(2)       <---------ARR11(3)                             ----------------->AGL1          --------->ANAC58       <---------ARR14(3)                             <-----------------AGL1         --------->RAP2.6(3)     ----------->ARR10                            <---------WOX13(1)     ----------------------->TaNAC69(2) --------->DEAR3(2)                              <---------WOX13(2)     --------->ATHB12<---------ZAT18 --------ARR11(2)                         ------->GAMYB   --------->WOX13(2)         <---------LBD16 ------->ARR11(2)            --------->KAN1      --------->WOX13(2)     --------->YAB5--------->ANAC46 ->MYB59     <---------RVE1(2)         --------->MYB52(1) <---------WOX13(2)         <---------At5g28300 -------SPL7(1) --------->ANAC58  ------>ZmHOX2a(1)  ----------------->AGL1       <----------DOF2 ----------->WRI1          <---------DOF5.7(1)<----------DOF2--------->MYB59  <---------LBD16   cgaaccgaagatattgatacacaataggctcttatccttcttaacgggcttaattgcccaaattaggcccaaaacgattagccggtttacggcactatgc  871500                                   <----------DOF2                                --------->ARR11(3)                                <---------ARR11(3)                              <---------ARR11(3)                              --------->AHL20(1)                                               ------                              --------->AHL12(1)                                          --------->ARR11(2)                              <---------AHL20(1)                                          <---------ARR11(2)                              <---------AHL25(3)                                          <---------ARR14(2)                              --------->ARR11(3)                                          --------->ARR14(2)                              <---------AHL12(1)    <---------KAN1                    <-------TEIL                    <-----------HVH21              --------->GATA12                 <---------GLK1(2)                --------->YAB1<---------AHL25(2)   --------->ARR14(2)               <---------RVE1(2)                <---------ICU4<---------AHL20(2)   <---------ARR14(2)               <---------GATA12<               <---------ATHB12<---------CCA1(2)   --------->GLK1(2)                --------->ARR11(1)        ----------->GT1 --------->ANAC55(2)       <---------GLK1(2)                --------->KAN1   -     <---------ANAC46   ----------->GT1<<<<<<<<<GATA-1   --------->YAB1       <---------YAB1  ------>ZmHOX2a(1)    <---------RVE1(2)   <---------ANAC55(2)  --------->TOE2(3)        ---------->DOF2--------->ARR14(1)   tattttgatgtggataaatcatggtcatgtaatatatctttatctatcgttagaatctgtgataaacaaaacaaaagtgtattatagattcgaatcctat  871600    --------->AHL25(3)    <---------YAB1   --------->AHL12(2)   --------->AHL25(2)   <---------AHL12(2)   <---------AHL12(3)   --------->AHL20(3)   <---------AHL20(3)   <---------AHL25(2)   --------->AHL12(3)                                                                       ---------  --------->ATHB51                                                                        <------MYB46(1)  <---------ICU4                                                                        <---------MYB52(1)  --------->YAB1                                                                        --------->ALFIN1  --------->AHL12(1)                                                                    <--------P  <---------AHL20(2)                                                              --------->ARR14(2)  <---------AHL25(3)                                                              <---------ARR11(2)  <--------HAHB4                                                                  <---------ARR14(2)  -------->ATHB1                                                                  --------->GATA12  -------->HAHB4                                                       ------>NtERF2<---------LBD16 <---------ATHB12                                                     ----------->HVH21<-------GAMYB <---------YAB1                            --------->KAN1           --------->At4g35610<---------MYB52(1) --------->AHL25(3)                   ------->GAMYB               <---------YAB5  <---------GATA12 --------->ICU4                 --------->YAB1                 --------->KAN1     --------->ARR11(2) <---------YAB5<-----------GT1<---------WOX13(2)               <---------AHL20(2) --------->RVE1(2) <---------ATHB51        <---------GATA12<---------DOF5.7(1)----------->GT1       --------->GLK1(2) --->RVE1(2)--------->WOX13(2)--------->WOX13(2)     --------------->AGL15       <---------GLK1(1) ---------WOX13(2)  ------>MYB83<-----------GT1      <---------------AGL15       --------->KAN1 -------->WOX13(2)  ------>MYB46(1)  --------->MYB46(3)--------->AHL20(2)  ---------->DOF2<------MYB83   ctaattattatttcaaataaccaaatagatgtaattacaaccgtcttattctttccaaaaaatagttaatcgctgacaaaagaaaatccggttgggccca  871700  Previous    Next  AGI:  At1g03475.1    Description:  LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase. Identical to Coproporphyrinogen III oxidase, chloroplast precursor (CPX) [Arabidopsis Thaliana] (GB:Q9LR75;GB:Q546I5;GB:Q94JR5); similar to HEMF2, coproporphyrinogen oxidase [Arabidopsis thaliana] (TAIR:AT4G03205.2); similar to Coproporphyrinogen III oxidase, chloroplast precursor (Coproporphyrinogenase) (Coprogen oxidase) (GB:P35055); contains InterPro domain Coproporphyrinogen III oxidase; (InterPro:IPR001260) Range:  from: 869051    to: 871212    Orientation: Reverse Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.
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