Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->GLK1(1)                        <---------GLK1(1)                       --------->ARR14(2)                       <---------ARR14(2)                     --------->LBD16                   <---------HSFB2a(2)                   <---------LBD16                   --------->HSFB2a(2)             --------->ARR14(2)             --------->ARR11(3)             <---------ARR11(3)        ----------->RAV1(1)       --------->MYB46(3) ------>RAV1(1)   <---------ANAC46                                                       ------->GAMYB --->ANAC46  <---------ARR14(2)                                    --------->REM1(1)   --------->At4g35610 ->AtMYB61   <---------GLK1(2)            <-----------RAV1(1)     <-------TEIL   <-------TEIL   acattgttaacaacagattttcgcggaaacccttccatttgcatatgttgttcaaacaatctccaagcttcatcacatctatgttcatcaactgcaattt  746100                              <---------ANAC58                              <---------ANAC46                        ------>ZmHOX2a(2)                       <---------GLK1(1)                <---------ANAC58                       --------->GLK1(1)                <---------ANAC58                       <------ZmHOX2a(2)            --------->GLK1(1)                      --------->ARR11(3)           --------->ARR14(2)                      <-----------ARR10            <---------ARR14(2)                      <---------ARR11(3)         --------->LBD16                      --------->ARR14(2)        <---------HSFB2a(2)                      <---------ARR14(2)        --------->HSFB2a(2)                     <------ZmHOX2a(1)       --------->AGP1                     <---------GLK1(2)       --------->ARR14(2)                                 -----                     ================================HOX2a_HOX2a                                -----                   <---------TOE1(2)         --------->ARR11(3)                                 <----      --------->ATHB12<---------AGP1         <---------ARR14(2)   <---------ANAC58              -----    --------------->AGL15     <---------ANAC58<------ZmHOX2a(2)   <---------ANAC58             <-----   gaatttcttcattgagtttagcaggatctctggcttgaagcagtatagatccagaaatgcttgaaattgcttctcttctatggatagaccatacatcgaa  746200                                                                 >>>>>>>>>E2Fd                                                                 >>>>>>>>>E2Fc                                                                --------->LBD16          --------->ANAC58                                      ------>NtERF2          --------->ANAC58                                     --------->ANAC46     <---------------AtSPL3                                    --------->ANAC58     <---------------AtSPL8                                    --------->ANAC58 -->TEIL  --------->ANAC46                                    --------->MYB46(3)                <---- ---->ARR14(2)                                                <---------LBD16         <---------ANAC58 -----ARR14(2)                                             <-----------GT1            <---------ANAC58 ---->GLK1(2)                     <---------RVE1(1)      <---------DAG2        ---------->DOF2  <---- ----ARR14(1)                  <---------TOE2(3)         <----------DOF2    ----------->GT1    ------   tctggtactagtacgaaacctagttaacacactgaggtattttgcattagacagaacagctttacccgccaaaccatgttgtaaagaagcttgagattga  746300                                           <---------ARR11(3)                                           --------->ARR11(3)                           --------->GLK1(1)                          --------->ARR11(3)                   <---------ANAC58                <---------ANAC58 --------->ANAC46              <---------ANAC58                <---------ANAC58 --------->ANAC58              ----------->GT1                  -----                <---------ANAC46 --------->ANAC58              <---------ANAC46                <-----        --------->TOE2(3) <---------ARR11(3)       --------->ANAC58                        ------>ZmHOX2a(1) -----ANAC58    ----------->GT1 --------->LBD16    --------->ANAC46                        ========== -----ANAC58   <-----------------------TaNAC69(2)  --------->ANAC58                        ========== --------->AtSPL8      --------->YAB1  ---------->DOF2   <-----------RAV1(1)              --------->TOE2(3)   gtacctgtaacttcaatggcgtgaataagaactccacgaaacaaagaactcaaacgacactggtggagtgaaacaggctgaagcttagttttcctcaatg  746400                  <<<<<<<<<<GT-3b            ------>ZmHOX2a(2)          --------->ARR14(2)          --------->ARR14(3)          <---------ARR14(2)                                          --------->ARR14(2)          <-----------ARR10                                           <---------ARR14(2)          <---------ARR11(3)                                 <------MYB83          <---------ARR14(3)                                 <------MYB46(1)          <---------AGP1                                    <---------MYB46(3)      ---------->DOF2    --------->TOE2(3)                <---------At4g35610 ---->YAB1--------->ARR11(3)                              <---------ZAT2 ----ATHB12<------ZmHOX2a(2)                            <---------DEAR3(1) ==================HOX2a_HOX2a                    <---------At4g35610<------ZmHOX2a(1)         <----- =================HOX2a_HOX2a     <---------MYB52(1)   ------>ZmHOX2a(1)       *TSS        <---------TOE1(2)   aaaacattgaaagatcttatttttcttcgtcaattcgttaagaccaatttgaagctcctcggctggtatgaggatttgatgaaaactgtttcccagtttc  746500                                                         <---------ANAC46                                                         <---------ANAC58                                                         <---------ANAC58                                                         --------->O2                                                         <---------TGA1a                                                         <---------O2                                       --------->ZAT2    --------->TGA1a                                      --------->ANAC46   ==================================bZIP_DOF                                      --------->ANAC58   ===========================bZIP_DOF                                      --------->ANAC58   =======================================bZIP_DOF                              <---------At4g35610       <---------TOE2(3)                              --------->At4g35610    <---------MYB52(2)                            --------->ZAT18       --------->ZAT18                            <---------ZAT14       <---------ZAT18                            --------->ZAT14  <----------DOF2                            <---------ANAC58                         <---------ANAC58    ======================bZIP_DOF     ---------->DOF2                         <---------ANAC58 --------->ANAC58          <------ZmHOX2a(1)<----------DOF2                        <-------TEIL--------->MYB46(3) --------->MYB52(1)---------->DOF2<---------ANAC58 --TEIL  <---------ANAC46<---------ANAC46 --------->ANAC58--------->TOE1(2)<----------ID1   atttagacatttcgtcgaacacttggtgcgtgaactgaaccagcaagctttgagcactaacgtgagattaggagaaaaagacaaaagctttcttgagaag  746600                            ------->PIF5                           --------->ZAT2                           <------MYB46(1)                           <------MYB83                           --------->At4g35610                   <---------YAB1               <---------MYB52(1)     --------->MYB46(3)              <-------GAMYB<---------ZAT2           <---------At5g28300      <---------ARR14(2)      <-----------GT1          <---------WRKY18(1) <-------TEIL           <---------ICU4--------->YAB1         --------->WRKY38(1)<-------PIF5             --------->YAB1<---------ICU4         ----------->HVH21 <---------At4g35610       <-----------GT1   ---------->DOF2         --------->WRKY45 <---------MYB46(3)        <---------ATHB12   --------->ZAT14             <-         --------->WRKY12 --------->MYB111(1)  --------->TOE1(3)  <---------ATHB12                <--       <----------DOF2   <-----------RAV1(2)   --------->TOE2(3)--------->YAB1                    <--  <---------MYB46(3)<---------ICU4  --------->ARR14(2) <---------YAB1<---------YAB1    ----------->GT1   acgatgggtctttgaccgttgatgatggcaggtgcgaagaaccactaaaccctaatcactattcactaatcactatagccagaagaaacttgtaaatttt  746700                                                        --------->AHL20(2)                                       >>>>>>>>>>GT-3b  --------->YAB1            --------->ARR11(3)      ----------->GT1  --------->YAB1    ------->GAMYB           --------->DAG2        ----------->GT1                      --------->ZAT6 --------->MYB52(1)        ---------->DOF2      ---------->DOF2                   <---------ANAC58--- ---------DOF2          <---------------AGL15<---------ANAC55(2)   <------ZmHOX2a(1)   <-----------GT1 -------ANAC58          ============================================================================= -------ANAC58    --------->ALFIN1---------->DOF2--------->DAG2  <---------TOE2(3)<---------ANAC58<--   gcttaaccgaaaaatatcaagtgttgacaaaaagagaaaagaaaaataagtaaagtaataatattctaaggaatttgtcaaattgagtatcactatatca  746800                                            --------->MYB111(1)                                    <---------AHL20(2)                                    --------->AHL20(2)                                    <---------AHL20(1)                                    --------->AHL20(1)                                <---------AHL20(1)     ------>MYB83                                --------->AHL20(2)   --------->AtMYB61     --------->YAB1             <---------AHL20(2)   <---------MYB59   <-----------HVH21------>ZmHOX2a(1)       --------->MYB46(2)                                 <----- ------>ARR14(2)   --------------->AGL15  <---------MYB52(1)                               <--------- ==================================MADS_MADS--------->MYB52(2)      --------->YAB1      <---------TOE2(3) -------ARR14(2)  ----------------->AGL2<---------ZAT6 ------>MYB46(1) <-----------GT1  <---------TOE1(3)   tatactgtcatagtaaatggtccttatctagcaaaaaatttattgttagttagaaccaaaccatgcttatttataacatttcataagattaagcttttta  746900                   --------->AHL20(2)                   <---------AHL20(2)                --------->TOE2(3)          --------->MYB52(2)          <---------MYB46(3)          <------MYB46(1)                           --------->ANAC58         <---------AtMYB61                          --------->ANAC58        <--------P--------->AHL20(2)                <---------ANAC55(2) ------GT1<------MYB83      --------->YAB1     --------->ZAT6 -DOF2 <-------GAMYB       <---------YAB1    <-----------GT1--------->YAB1 ---------->DOF2          <   ctaatcttgggttggtttcattaaattctatgatagcatttttggtttaacaatacgcataaacataagttaatccaaaatgcaatgcatagtttcagat  747000  Previous    Next  AGI:  At1g03100.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G69290.1); similar to hypothetical protein OsJ_030327 [Oryza sativa (japonica cultivar-group)] (GB:EAZ16118.1); similar to hypothetical protein OsI_032496 [Oryza sativa (indica cultivar-group)] (GB:EAY78537.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22557.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 743885    to: 746479    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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