Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ----------->HVH21          <------NtERF2          --------->At5g28300                                                           <---------At4g35610         <---------MYB46(3)                                                     <---------ARR14(2) <-         ----------->GT1                                                        --------->ARR14(2) --        <---------DEAR3(1)                                                    --------->LBD16      --        <---------ANAC46                                                     --------->LBD16       --        --------->ALFIN1                                                     --------->ANAC58    <---       <---------ABI4(1)                --------------->AGL15                --------->ANAC46   -----       --------->ATERF1(1)      <-----------TGA1                             --------->ANAC58  ------       <------NtERF2  <---------At4g35610                                   --------->LBD16    ------     <---------DEAR3(1)         <-----------HVH21   <------ZmHOX2a(1)       <---------LBD16   <------     --------->ALFIN1 --------->At4g35610    ---------->DOF2               <---------LBD16    -------     <---------RAP2.3(3)      --------->At4g35610 --------->ALFIN1      --------->ARR14(2)<----------   agagaagggggcggtgaaagaatgagctcatcagcgtcatcaccttgaaaaggaggagggtttgtattgcattgaatccccggaacttgcaactggtacg  392500                                       <---------ARR14(2)                                       --------->ARR14(2)                                       --------->GLK1(2)                                      <---------GLK1(2)                                    ----------->ARR10                                 <------MYB83                                 <------MYB46(1)                                <---------MYB46(3)            ------>MYB46(1)        <---------WOX13(1)                                --------->MYB55(2)            ------>MYB83          <---------ANAC58 --------MYB46(3)               --------->MYB111(2)         --------------->AGL15   <---------ANAC58 ------->MYB52(2)               --------->MYB111(1)         <---------MYB46(2)     --------->ATHB12 ------->MYB46(2)              <---------ANAC46             --------->TOE2(3) --------->ICU4 --------->GT1                 <---------MYB55(1)           <---------MYB59 --------->YAB1 ------MYB52(1)              <---------MYB46(3)            ----------------->AG--------->ATHB12 ---->TOE2(3)                --------->MYB55(2)            ----------------->AGL1<---------WOX13(1) --->ANAC58                 --------->ALFIN1         <------MYB83          --------->ICU4 --->ANAC58                 <---------AtMYB61        <------MYB46(1)    <------ZmHOX2a(1) -TEIL                   <-----------RAV1(1)      <---------ANAC58    --------->ANAC58     ---------- -->SPL7               ----------->RAV1(2)<---------YAB1   --------->ANAC55(2)<---------YAB1       -- -----AtSPL3    <------ZmHOX2a(1)----------->GT1  <---------ANAC58    --------->ANAC58 --------->ZAT18   ttagttaatacagttggaggaaaacccctggtggtgggtagaatctgatagtgcttggtttacctaatttgtaaggaatgatgattgattgcacaaagtt  392600                      --------->At4g35610                  <----------CDC5                 <---------ZAT2                                                                    --                 --------->At4g35610                   <---------MYB52(1)                        <---                 --------->ZAT2             ------->TEIL                                      -------                 <---------At4g35610     --------->ANAC58                                     <------           <---------LBD16     --------->TOE1(2)      <----------DOF2                         <------ >DOF2<----------DOF2 <---------At4g35610--------->ANAC46           <---------YAB1            ------- -------->DOF2  --------->ALFIN1         --------->ANAC58        <----------DOF2   <-------TEIL------   agaaaggcctttctctgggtgctgagcagaaaacgaaggaaacacgaacttgtctgcgttatctgtgcttttgatttagtttaggctcatggtcgagata  392700         <---------ATERF1(1)        --------->ATERF1(1)       <---------ATERF1(1)       ------>NtERF2     --------->LBD16                                                            <---------ARR14(2)     <------NtERF2                           <------------CBF                   --------->ARR14(2)    <---------ATERF1(1)                     <--------ATHB1                    --------->ANAC58   --------->ATERF1(1)                      --------->ATHB51                  --------->ANAC58  --------->PCF5                            -------->HAHB4                 --------->WRKY18(1)  <---------PCF2                            <---------ICU4                <-----------HVH21 ----------->TCP11(1)                       --------->YAB1           --------->ZAT2 ------->ALFIN1                            <---------ATHB12          <---------TGA1a --------RAV1(1)                           <---------YAB1            <---------ZAT2 -->ARR14(2)                 ==================================================MYC_MYB ---ARR14(2)                 <-------GAMYB --------->ICU4          <---------ALFIN1--------->ANAC58 ---ARR11(3)                <---------MYB46(3)           ---------->DOF2  <--------ZAP1    <---------GLK1(1) -->ARR11(3)           <---------YAB1      <---------ATHB51      --------->AtMYB61 --------->ANAC58 --->CCA1(2)        <---------AHL20(2)   --------->YAB1  ======================bZIP_DOF    --------->GLK1(1)   tgtgggccgggcctccccttgttttatttttggttgtattttctaataattgtgcaaaacaaagaaacctcacctcggtcaagaaacgctctgaaatctg  392800                                           <---------YAB1                                          --------->ARR11(3)                                          <---------ARR11(3)                                     <---------AHL20(2)                                     --------->ICU4                                     --------->AHL20(2)                              <---------MYB46(3)                              ----------->GT1                             --------->ALFIN1<----------DOF2  --------->DAG2        <---------AHL20(2)                             <---------DEAR3(1)       <----------ID1               --------->AHL20(2)                  <<<<<<<<<TBF1 ----------->GT1     ---------->DOF2                <---------AHL20(2)              <-----------GT1<---------AtMYB61   <---------YAB1           ---------->DOF2     <---------TOE1(3) <----------DOF2    <-----------GT1    ---------->DOF2 ----------->GT1   ------   aactctgaaggttgtttttcttcttctttcggtggtgaaaaaattatctttatgaaaagacaaaaaagtttttgaaaaaaggaaatttttttcaaaaaaa  392900                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              <------NtERF2                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                            <--------                                                                                 --------->At4g35610                                                       --------->ZAT2           <---------DEAR3(1)<--                                                       <---------ZAT2         <-----------HVH21<-----                           <-----------RAV1(1)--------->DEAR3(1)       <---------At4g35610  ---------                           <---------MYB46(3)--------->ANAC58          --------->At4g35610  <--------                         <-------GAMYB       --------->ANAC46        <---------ARR14(2)     ---------                        <-----------RAV1(1)  --------->ANAC58       <------ZmHOX2a(1)     --------->ALFIN1 --->MYB52(1)           --------->ALFIN1    ------->TEIL  --------->ETT(2)<-----------HVH21--------->At4g35610   cagactgagagagagagagagagagtgtgttgttggccatgggatgcacggcctccaagctcgacagtgaggatgctgtccgtcgctgcaaggagcggcg  393000     <---------YAB1 ---->NtERF2 ------>RRTF1(3) ------>RAP2.3(2) ------>RAP2.3(3) ------>DEAR3(1) ----->RRTF1(1) ----->ATERF1(1) ---NtERF2 ----->DEAR4(2) ----->RAP2.3(1) ----->ORA47(2) -----ATERF1(1)                            ------>NtERF2 ---->ABI4(2)                              <---------At4g35610 ->NtERF2                                  --------->At4g35610 -----RAP2.3(1)                           --------->RAP2.3(2) --->RRTF1(3)                             --------->DEAR3(1) --->DEAR3(1)                            --------->RAP2.3(1) --->RAP2.3(2)                           <------NtERF2 -->ERF1                                --------->ABI4(1) ---ABI4(2)                             ------>NtERF2 -->DEAR4(2)                            <---------RAP2.3(1) -->RAP2.3(1)                           <---------ATERF1(1) -->ORA47(2)             --------->ANAC58--------->ATERF1(1) -->RRTF1(1)             --------->ANAC58--------->DEAR4(2) -->ATERF1(1)   ------>NtERF2          --------->DEAR3(1) -->RAP2.6(1)  <---------ANAC46        <---------DEAR3(1) --ORA47(2)    --------->DEAR3(1)      <---------ATERF1(2) --DEAR4(2)   --------->ATERF1(1)      --------->ATERF1(2) --ATERF1(1)  <------NtERF2            --------->RAP2.3(3) --RAP2.3(1) <---------ATERF1(1)       --------->ANAC46 -RAP2.3(2) <---------DEAR3(1)         --------->RAP2.3(2) -------ANAC46--------->RAP2.3(1)     --------->ATERF1(1)      <---------ALFIN1 ----DEAR3(1)------>NtERF2            --------->DEAR4(2)      --------->At4g35610                ---- >ATERF1(1) --------->ANAC58          --------->ERF1          <---------At4g35610             ------>ZmHOX2a(1) -DEAR3(1)  --------->ANAC58          --------->RAP2.3(1)     ------>NtERF2          ------>NtERF2  < >ALFIN1  <------ZmHOX2a(1)          <---------ATERF1(1)  <-----------RAV1(1)        <---------ZAT18<   ccgtcttatgaaggacgccgtctacgctcgtcaccatctcgccgccgctcactctgactactgccgctcccttcgtctcactggctctgccctctcctcc  393100          --------->ANAC58          <---------ATERF1(1)          --------->ANAC58        --------->DEAR3(1)       --------->ATERF1(1)       <------NtERF2      <---------ATERF1(1)      --------->LBD16      ------>NtERF2                                                            <-------MYC4     --------->RAP2.3(2)                                                       ------->MYC3     --------->ATERF1(2)                                                       ------->MYC2     <---------DEAR3(1)                                                        <-------MYC3     <---------ATERF1(2)                                                       ------->PIF5     --------->DEAR3(1)                                                        ------->MYC4    --------->ATERF1(1)                                                        <-------PIF5    --------->RAP2.6(1)                                                        <-------MYC2    <------NtERF2                                                             <<<<<<<<<<ABI5    <---------LBD16                                                           <<<<<<<<<<AtMYC2    --------->DEAR4(2)                                                        <<<<<<<<<<HY5    --------->ORA47(2)                                                        <--------ABF1    --------->RAP2.3(1)                                                       --------->O2    --------->ERF1                                                            --------->TGA1a   --------->ABI4(1)                                                          <---------TGA1a   ------>NtERF2                                                              <---------ANAC55(2)   <---------RAP2.3(1)                                                        --------->ANAC55(2)   <---------ATERF1(1)                                                        <---------O2  --------->RAP2.3(2)                                                         --------->bZIP60(2)  --------->ATERF1(2)                                                       <---------ALFIN1  --------->RAP2.3(3)                                                      <------NtERF2  <---------DEAR3(1)                                                      ------>NtERF2  --------->DEAR3(1)                     ===============================================bZIP_DOF  <---------ATERF1(2)                    <----------DOF2                  <-----------------PIF3(1) --------->ATERF1(1)                   --------->LBD16                    <-----------HVH21 --------->DEAR4(2)              --------->KAN4(2)                       --------->ANAC58 --------->ERF1                <---------ARR14(2)                        --------->ANAC58 --------->RAP2.3(1)       --------->HSFB2a(2)      ------>NtERF2        --------->ANAC46 --------->ORA47(2)        --------->LBD16         --------->ANAC46    <---------ATERF1(1)          - -->ZmHOX2a(1) <---------ALFIN1--------->ARR14(2)  --------->DEAR3(1)<------ZmHOX2a(1)              - ---------RAP2.3(1)        <---------HSFB2a(2)  <-----------GT1 <-----------HVH21<-----------HVH21 -- ---------ATERF1(1)  <-----------HVH21 <---------At4g35610  ------>ZmHOX2a(1)------>NtERF2         <-   ttcgccgccggcgagcccctctccgtctccgagaatactcccgctgtttttctccgcccttcctccagtcaggacgcgccacgtgtcccttcttcccatt  393200                           <---------ZAT2                        --------->At4g35610                    --------->ARR14(2)             ------>ZmHOX2a(1)             <---------ATERF1(1)                                 <---------GLK1(2)            <---------ALFIN1  --------->ANAC58                --------->ANAC46         <---------ALFIN1  --------->ZAT2                     <---------ALFIN1   --------->ARR14(2)   --------->LBD16                --------->HSFB2a(1)                     <-----   <---------ARR14(2)  --------->ANAC46                <---------HSFB2a(1)                     ------ -------->HSFB2a(2) <---------ARR14(2)                 --------->ATERF1(1)                     ------ -------->ANAC46------>NtERF2 --------->ANAC58         <---------HSFC1(2)            ------>ZmHOX2a(1) ------->LBD16  --------->LBD16                        --------->HSFC1(2)       ------>ZmHOX2a(1)---- --------LBD16 --------->DEAR3(1)                   <------ZmHOX2a(1)     ------>NtERF2     ------>ZmHOX2a(1)   ccccagaaccccctcctccgcccatccgcagcaagcctaagcctactaggcctaggaggcttccacacattctctccgactcctctccttcttcctctcc  393300                              --------->ZAT6                                            <-----------GT1 ------>NtERF2               --------->GLK1(1)                        --------->HSFB2a(2) ----At4g35610     --------->ZAT14                                    <---------HSFB2a(2) ----->RAV1(2)     <---------At4g35610                          ------>ZmHOX2a(1)    <-----------ARR10 --->At4g35610     --------->At4g35610                   --------->ANAC58<---------ARR14(2) -->ZmHOX2a(1) <---------ALFIN1                          --------->ANAC58--------->ARR14(2)   tgccaccagtttctatcccactgctcaccagaactctacttactctcgctctccatctcaagcttcctctgtctggaactgggagaatttctaccctccc  393400  Previous    Next  AGI:  At1g02100.1    Description:  leucine carboxyl methyltransferase family protein. similar to hypothetical protein [Vitis vinifera] (GB:CAN69755.1); contains InterPro domain Leucine carboxyl methyltransferase (InterPro:IPR007213); contains InterPro domain Leucine carboxyl methyltransferase, subgroup (InterPro:IPR016651) Range:  from: 389812    to: 392816    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g02110.1    Description:  proline-rich family protein. similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G60320.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79228.1); contains InterPro domain Protein of unknown function DUF632 (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630 (InterPro:IPR006868) Range:  from: 392939    to: 395554    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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