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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
--------->
ZAT18
<---------
ZAT18
<---------
ARR14(2)
--------->
ARR14(2)
<---------
SPL7
--------->
LBD16
----------->
RAV1(2)
------->
GAMYB
<-------
TEIL
<---------
ARR14(2)
--------->
TOE2(3)
--------->
ARR14(2)
----------->
RAV1(1)
----------->
ARR10
--------->
MYB46(3)
--------
LBD16
<---------
AtMYB61
--------->
MYB52(1)
--
-------->
RAV1(2)
--------->
GLK1(1)
--------->
WOX13(1)
--------->
ANAC58
---------->
DOF2
<---
->
GT1
--------->
GLK1(2)
--------->
ALFIN1
-------->
P
<---------
LBD16
--------->
TOE2(3)
----
>
GT1
<---------
GLK1(2)
---------->
DOF2
--------->
MYB46(3)
--------->
SPL7
--------->
TOE1(3)
<----
acctggagattctcgcctgagatttcaaaggtgatggtgttccatcaaccacaaaaaccgggtacgctccaaa
ctgcaaaaccctaaaccgcattacaat
308600
--------->
LBD16
<---------
ANAC55(2)
--------->
ANAC58
---------->
DOF2
--------->
ANAC55(1)
--
<---------
ATHB12
--------->
ANAC55(2)
---
------->
At4g35610
--------->
WOX13(1)
--------->
AHL20(2)
---------->
DOF2
---
------
ICU4
--------->
ARR11(3)
<---------
AHL20(2)
--------->
ANAC46
<--
----->
YAB1
<---------
GLK1(2)
--------->
TOE2(3)
--------->
ANAC46
<---------
DAG2
---
-----
ATHB12
<---------
ARR11(3)
--------->
TOE1(3)
--------->
ANAC58
<----------
DOF2
<-
catctccatagaaaaaaatcaagatttttcaatcaagcgaaaacctaaaaaattcaaaaaaacccgtaatccacagaaaaaaggaacttttttagccaat
308700
--------->
ANAC58
<----------
ID1
---------->
DOF2
<------
ZmHOX2a(1)
---------->
DOF2
--------->
ANAC58
--------->
YAB1
------------->
AGL15
----------->
RAV1(1)
-------------->
AGL1
--------->
ANAC58
----
-------------->
AGL3
--------->
ANAC46
<---
---------------
AGL2
--------->
ANAC58
<---------
PCF2
-------------->
AG
----------------->
AGL1
--------->
YAB1
--------->
ZAT18
--------->
AHL20(2)
--------------
AGL15
--------->
GLK1(1)
---------->
DOF2
--------->
AHL20(2)
<------
gccaaaaaaggattaaaggagacgaaattgggaaattcagtagaagcataacaagagagaagaagcgcgcagcaataaaaaaaaaaaaaatgggac
cttt
308800
--------->
ANAC58
--------->
ANAC58
<---------
ANAC55(2)
<----
<---------
LBD16
--------->
ANAC58
<-----
<---------
SPL7
--------->
ANAC58
------
<---------------
AtSPL8
<------
ZmHOX2a(1)
===========
<-------
TEIL
<----------
ID1
<------
ZmHOX2a(1)
<--------
P
<----------
DOF2
--------->
HSFB2a(2)
----------->
GT1
<---------
AtMYB61
---------->
DOF2
<------
ZmHOX2a(2)
----->
HSFB2a(2)
<---------
DEAR3(1)
--------->
TOE1(3)
===============
HOX2a_HOX2a
------
HSFB2a(2)
---------->
DOF2
--------->
ALFIN1
--------->
TOE2(3)
<---------
ARR14(2)
----
DOF2
<---------------
AtSPL3
<------
NtERF2
<---------
TOE2(3)
<---------
MYB46(3)
<---------
HSFB2a(2)
gagaagaggttgatagtacggaagaaagtgagtcggaggtgaggtttaaggacgaaacccttaacagcggtttcatgctgaacgatccagaaggagagat
308900
<---------
ANAC58
<---------
MYB46(3)
<---------
ANAC58
--------->
MYB52(2)
--------->
LBD16
--------
<---------
TOE1(2)
--------->
HSFB2a(2)
<--------
<---------
MYB52(1)
<---------
HSFB2a(2)
<---------
ATHB12
------->
GAMYB
<-------
MYC3
--------->
ARR14(2)
--------->
ANAC58
--
ZmHOX2a(2)
<---------
At4g35610
<---------
ARR14(2)
--------->
ANAC58
----
ARR11(3)
--------->
At4g35610
<---------
GLK1(1)
<---------
ALFIN1
--->
ARR11(3)
<-----------
RAV1(1)
<---------
At4g35610
------>
NtERF2
--------->
WOX13(1)
==
HOX2a_HOX2a
---------->
DOF2
------->
MYC3
--------->
GLK1(1)
<---------
ALFIN1
caacagcgactcgtttgtttctgagaaaatcaaagccttgttgctgagcatatggtctcagcaaatcccagaaattgcctcccacacccat
tcaatcaaa
309000
--------->
At5g28300
<---------
RAP2.6(3)
<------
ZmHOX2a(2)
--------->
LBD16
--------->
ALFIN1
--------->
MYB52(1)
--------->
ANAC55(2)
<---------
ARR11(3)
--------->
AHL20(2)
<---------
ANAC46
<---------
At4g35610
<---------
AHL20(2)
<---------
ANAC55(2)
<---------
At4g35610
--------->
DAG2
--------->
RAP2.6(2)
--------->
At4g35610
--------->
ANAC58
--------->
At4g35610
->
YAB1
--------->
At4g35610
---------->
DOF2
---------->
DOF2
---------->
DOF2
-----
-
ATHB12
--------->
MYB52(1)
--------->
ARR11(3)
--------->
ANAC58
---------->
DOF2
<------
ZmHOX2a(1)
atgccgtaatagcctagcggagcggagcggaagatcacaaaccgaaaagcctaaaccagcaaaaggcgaattaaaagaaaaggaagccgaaggatagaat
309100
------>
NtERF2
------------>
AtMYB77
<---------
ALFIN1
--------->
DEAR3(1)
----------->
HVH21
--------->
O2
--------->
ARR14(2)
--------->
bZIP60(2)
<---------
bZIP60(1)
<---------
ICU4
------>
NtERF2
<-----------
TBP
--------->
bZIP60(1)
<---------------
AGL15
--------->
ANAC58
--------------->
AGL15
--------->
RAP2.6(2)
----------------->
AGL2
--------->
ANAC46
<---------
CCA1(2)
<-----------
TGA1
<---------
MYB52(1)
<---------
ANAC58
<-----------
HVH21
<---------
ARR14(2)
<---------
ANAC58
<---------
ANAC58
--------->
bZIP60(2)
<-------
GAMYB
<---------
MYB52(1)
<-----------
RAV1(1)
<------
NtERF2
--------->
ANAC58
<-------
GAMYB
<---------
ANAC46
<-----------------
AGL2
------->
GAMYB
<---------
PCF2
----------->
HVH21
<---------
ANAC58
<-----------------
AGL3
<---------
MYB55(2)
------->
CBF
<---------
ANAC58
<---------
ANAC58
----------------->
AGL3
--------->
MYB46(3)
---------
caatttctgaccgttatgcgagtcttgttggactcgcttgtgttgtgcctatctatttatggcatcgtcacatcacccgccacggttatgggcccaacaa
309200
------
------
------
<xxxxxx
<xxxxxx
<xxxxxxx
<xxxxxxx
<xxxxxxx
<xxxxxxxx
<xxxxxxxx
<xxxxxxxxxxxxxx
<xxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxx
<---------
PCF2
--
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
ALFIN1
<xxx
<xxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<---------
ALFIN1
<xxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
AHL20(2)
--------->
DEAR3(1)
---------
<---------
ARR11(3)
--------->
AHL20(2)
--------->
MYB46(3)
<xxxxxxxx
<---------
GLK1(1)
--------->
AHL20(1)
------>
ZmHOX2a(2)
<xxxxxxxx
--------->
GLK1(1)
<---------
AHL20(2)
<------
ZmHOX2a(2)
--------->
DEAR3(2)
<---------
ARR11(3)
--------->
AHL20(2)
--------->
ARR14(2)
<xxxxxxxxx
--------->
LBD16
--------->
AHL20(2)
<---------
ARR14(2)
--------->
PCF2
<---------
LBD16
--------->
ZAT14
<---------
TOE2(3)
<-----------
GT1
<xxxxxxxxxxxxxxxxxxx
smallRNA(s2)
-->
RAV1(1)
--------->
ARR11(3)
----------->
GT1
<---------
AHL20(2)
<---------
MYB52(1)
<xx
ttagcccggatgatatctctgtagcccattaagtctattaagaaaaaataaaataaaaaactatttatacagat
cgcccaccgtggggctcgaacccacg
309300
<xxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
------>
MYB46(1)
<xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
------>
MYB83
<xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
==============================
RAV
----------->
RAV1(2)
--------->
ANAC55(2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
----------->
GT1
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
ICU4
--->
ANAC58
--------->
MYB52(1)
<---------
ANAC55(2)
--->
ANAC58
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--->
MYB46(3)
<---------
ANAC58
<xxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxx
smallRNA(le3)
--------->
MYB46(3)
<------
MYB83
xxxxxxxxx
smallRNA(le3)
<---------
MYB111(1)
<------
MYB46(1)
xxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
xxxx
smallRNA(fl3)
<---------
ZAT18
<---------
MYB46(3)
xxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
------->
AtMYB61
--------->
ZAT18
*
TSS
<-------
GAMYB
xxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
>
TOE1(2)
<---------
ANAC58
<xxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<------------
CBF
xxxxxxxx
smallRNA(i)
<----------
DOF2
<-----------
RAV1(1)
<---------
AHL20(2)
-------
xxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
------------>
CBF
-------
xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<----------
DOF2
<-----------
GT1
---------
accacaaggttaagagccttgcgctctaccaactgagctagacgggc
tttgttggttaagtattactctattcaattgtctagtagaaaaccagaaaagc
309400
----------->
GT1
--------->
LBD16
<---------
WOX13(1)
<---------
ANAC46
<------------
CBF
<---------
LBD16
--------->
ANAC58
--------->
ATHB12
<---------
DEAR3(1)
--------->
ANAC46
--------->
TOE2(3)
<---------
ANAC58
--------->
ANAC58
--------->
ZAT14
-->
ANAC58
<-----------------
AGL3
<---------
ANAC58
--------->
ANAC46
--------->
HSFB2a(2)
-->
ANAC58
------->
TEIL
------>
NtERF2
--------->
TOE1(2)
<---------
HSFB2a(2)
->
DOF2
--------------->
AtSPL8
<----------
CDC5
----------->
GT1
<-----------
GT1
<---------
ZAT14
attatccaaaaatgtgcaagtatggaccttaattggtgtctcgctgaggcctgcgggtaaaatagtgaaacacacgataaaccatttctagactgtagtt
309500
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AGI:
At1g01880.1
Description:
DNA repair protein, putative. Identical to Flap endonuclease GEN-like 1 (GEN1) [Arabidopsis Thaliana] (GB:Q9LPD2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48900.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO24472.1); contains InterPro domain XPG N-terminal; (InterPro:IPR006085); contains InterPro domain XPG I; (InterPro:IPR006086); contains InterPro domain Helix-hairpin-helix motif, class 2; (InterPro:IPR008918); contains InterPro domain DNA repair protein (XPGC)/yeast Rad; (InterPro:IPR006084)
Range:
from: 306558
to: 308991
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g01890.1
Description:
pre-tRNA. tRNA-Lys (anticodon: CTT)
Range:
from: 309275
to: 309347
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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