Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->ANAC58                                                            --------->ZAT18                                                            <---------ZAT18                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                          <---------SPL7                                                        --------->LBD16            ----------->RAV1(2)               ------->GAMYB <-------TEIL     <---------ARR14(2)                       --------->TOE2(3)     --------->ARR14(2)                       ----------->RAV1(1)   ----------->ARR10                         --------->MYB46(3) --------LBD16                 <---------AtMYB61     --------->MYB52(1)                            -- -------->RAV1(2)  --------->GLK1(1)       --------->WOX13(1)--------->ANAC58     ---------->DOF2<--- ->GT1--------->GLK1(2)     --------->ALFIN1-------->P<---------LBD16          --------->TOE2(3) ---- >GT1<---------GLK1(2) ---------->DOF2    --------->MYB46(3)--------->SPL7     --------->TOE1(3)<----   acctggagattctcgcctgagatttcaaaggtgatggtgttccatcaaccacaaaaaccgggtacgctccaaactgcaaaaccctaaaccgcattacaat  308600                                                              --------->LBD16                                                             <---------ANAC55(2)                                                             --------->ANAC58                              ---------->DOF2                --------->ANAC55(1)                   --                             <---------ATHB12                --------->ANAC55(2)                  --- ------->At4g35610         --------->WOX13(1) --------->AHL20(2)            ---------->DOF2       --- ------ICU4         --------->ARR11(3)        <---------AHL20(2)      --------->ANAC46            <-- ----->YAB1         <---------GLK1(2)    --------->TOE2(3)   --------->ANAC46       <---------DAG2--- -----ATHB12        <---------ARR11(3)   --------->TOE1(3)   --------->ANAC58       <----------DOF2<-   catctccatagaaaaaaatcaagatttttcaatcaagcgaaaacctaaaaaattcaaaaaaacccgtaatccacagaaaaaaggaacttttttagccaat  308700                   --------->ANAC58                <----------ID1           ---------->DOF2       <------ZmHOX2a(1)   ---------->DOF2 --------->ANAC58                                      --------->YAB1 ------------->AGL15                                               ----------->RAV1(1) -------------->AGL1                                            --------->ANAC58                 ---- -------------->AGL3                                            --------->ANAC46                 <--- ---------------AGL2                                            --------->ANAC58          <---------PCF2 -------------->AG ----------------->AGL1  --------->YAB1      --------->ZAT18     --------->AHL20(2) --------------AGL15          --------->GLK1(1)           ---------->DOF2--------->AHL20(2)   <------   gccaaaaaaggattaaaggagacgaaattgggaaattcagtagaagcataacaagagagaagaagcgcgcagcaataaaaaaaaaaaaaatgggaccttt  308800               --------->ANAC58               --------->ANAC58               <---------ANAC55(2)                                                              <----              <---------LBD16                    --------->ANAC58                              <-----            <---------SPL7                       --------->ANAC58                              ------          <---------------AtSPL8               <------ZmHOX2a(1)                          ===========       <-------TEIL                           <----------ID1                              <------ZmHOX2a(1)      <--------P                         <----------DOF2                            --------->HSFB2a(2)    ----------->GT1                   <---------AtMYB61     ---------->DOF2       <------ZmHOX2a(2) ----->HSFB2a(2)                 <---------DEAR3(1)     --------->TOE1(3)         ===============HOX2a_HOX2a ------HSFB2a(2)     ---------->DOF2--------->ALFIN1    --------->TOE2(3)        <---------ARR14(2) ----DOF2 <---------------AtSPL3<------NtERF2<---------TOE2(3)   <---------MYB46(3) <---------HSFB2a(2)   gagaagaggttgatagtacggaagaaagtgagtcggaggtgaggtttaaggacgaaacccttaacagcggtttcatgctgaacgatccagaaggagagat  308900                                                                          <---------ANAC58            <---------MYB46(3)                                            <---------ANAC58            --------->MYB52(2)                                    --------->LBD16            --------           <---------TOE1(2)                                     --------->HSFB2a(2)        <--------          <---------MYB52(1)                                     <---------HSFB2a(2)    <---------ATHB12 ------->GAMYB                                  <-------MYC3 --------->ARR14(2)    --------->ANAC58 --ZmHOX2a(2)                          <---------At4g35610   <---------ARR14(2)    --------->ANAC58 ----ARR11(3)                          --------->At4g35610  <---------GLK1(1)    <---------ALFIN1 --->ARR11(3)                      <-----------RAV1(1)   <---------At4g35610------>NtERF2 --------->WOX13(1) ==HOX2a_HOX2a              ---------->DOF2     ------->MYC3--------->GLK1(1)  <---------ALFIN1   caacagcgactcgtttgtttctgagaaaatcaaagccttgttgctgagcatatggtctcagcaaatcccagaaattgcctcccacacccattcaatcaaa  309000  --------->At5g28300  <---------RAP2.6(3)          <------ZmHOX2a(2)  --------->LBD16  --------->ALFIN1 --------->MYB52(1) --------->ANAC55(2)          <---------ARR11(3)                    --------->AHL20(2) <---------ANAC46 <---------At4g35610                               <---------AHL20(2) <---------ANAC55(2)   <---------At4g35610                  --------->DAG2 --------->RAP2.6(2)   --------->At4g35610            --------->ANAC58            --------->At4g35610 ->YAB1           --------->At4g35610     ---------->DOF2 ---------->DOF2  ---------->DOF2      ----- -ATHB12    --------->MYB52(1)--------->ARR11(3)      --------->ANAC58---------->DOF2    <------ZmHOX2a(1)   atgccgtaatagcctagcggagcggagcggaagatcacaaaccgaaaagcctaaaccagcaaaaggcgaattaaaagaaaaggaagccgaaggatagaat  309100                                                                              ------>NtERF2                                                                             ------------>AtMYB77                                                                             <---------ALFIN1                                                                             --------->DEAR3(1)                                                                            ----------->HVH21                                                                   --------->O2   --------->ARR14(2)                                                                   --------->bZIP60(2)                                                                   <---------bZIP60(1)                                                      <---------ICU4       ------>NtERF2                                                    <-----------TBP--------->bZIP60(1)                                                  <---------------AGL15   --------->ANAC58                                                  --------------->AGL15   --------->RAP2.6(2)                                                 ----------------->AGL2   --------->ANAC46                                              <---------CCA1(2)<-----------TGA1   <---------MYB52(1)                                        <---------ANAC58       <-----------HVH21  <---------ARR14(2)               <---------ANAC58         <---------ANAC58      --------->bZIP60(2)<-------GAMYB          <---------MYB52(1)         <-----------RAV1(1)     <------NtERF2--------->ANAC58         <-------GAMYB           <---------ANAC46<-----------------AGL2   ------->GAMYB <---------PCF2    ----------->HVH21            <---------ANAC58<-----------------AGL3  <---------MYB55(2) ------->CBF   <---------ANAC58  <---------ANAC58----------------->AGL3  --------->MYB46(3) ---------   caatttctgaccgttatgcgagtcttgttggactcgcttgtgttgtgcctatctatttatggcatcgtcacatcacccgccacggttatgggcccaacaa  309200                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <---------PCF2  --                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                --------->ALFIN1 <xxx                                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                           <---------ALFIN1 <xxxxxxxx                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   --------->AHL20(2)     --------->DEAR3(1)---------           <---------ARR11(3)                     --------->AHL20(2)      --------->MYB46(3)<xxxxxxxx          <---------GLK1(1)                   --------->AHL20(1)       ------>ZmHOX2a(2)    <xxxxxxxx          --------->GLK1(1)                   <---------AHL20(2)      <------ZmHOX2a(2)    --------->DEAR3(2)         <---------ARR11(3)                   --------->AHL20(2)     --------->ARR14(2)    <xxxxxxxxx    --------->LBD16                      --------->AHL20(2)          <---------ARR14(2)   --------->PCF2  <---------LBD16--------->ZAT14     <---------TOE2(3)          <-----------GT1<xxxxxxxxxxxxxxxxxxxsmallRNA(s2) -->RAV1(1)--------->ARR11(3)        ----------->GT1          <---------AHL20(2)<---------MYB52(1)<xx   ttagcccggatgatatctctgtagcccattaagtctattaagaaaaaataaaataaaaaactatttatacagatcgcccaccgtggggctcgaacccacg  309300                                <xxxxxxxxxxxxxxxsmallRNA(fl3)                                <xxxxxxxxxxxxxxxsmallRNA(le3)                               <xxxxxxxxxxxxxxxxsmallRNA(s)                               <xxxxxxxxxxxxxxxxsmallRNA(i)                               <xxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxxxxxxxxxxxxxxsmallRNA(s)                             <xxxxxxxxxxxxxxxxsmallRNA(i)                             <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxsmallRNA(s)                             <xxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                            ------>MYB46(1)                            <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            ------>MYB83                            <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            ==============================RAV                            ----------->RAV1(2)        --------->ANAC55(2)                            <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ----------->GT1         <xxxxxxxxxxxxxxxxsmallRNA(s) <---------ICU4 --->ANAC58                --------->MYB52(1)          <---------ANAC55(2) --->ANAC58                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->MYB46(3) <---------ANAC58<xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxsmallRNA(le3)    --------->MYB46(3)      <------MYB83 xxxxxxxxxsmallRNA(le3)   <---------MYB111(1)     <------MYB46(1) xxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxsmallRNA(fl3) <---------ZAT18                <---------MYB46(3) xxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ------->AtMYB61   --------->ZAT18             *TSS<-------GAMYB xxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) >TOE1(2)     <---------ANAC58<xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <------------CBF xxxxxxxxsmallRNA(i) <----------DOF2          <-----------RAV1(1)    <---------AHL20(2)       ------- xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ------------>CBF          ------- xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <----------DOF2 <-----------GT1                 ---------   accacaaggttaagagccttgcgctctaccaactgagctagacgggctttgttggttaagtattactctattcaattgtctagtagaaaaccagaaaagc  309400                                                    ----------->GT1                                                   --------->LBD16                             <---------WOX13(1)   <---------ANAC46                            <------------CBF     <---------LBD16       --------->ANAC58                           --------->ATHB12    <---------DEAR3(1)      --------->ANAC46                        --------->TOE2(3)     <---------ANAC58         --------->ANAC58    --------->ZAT14 -->ANAC58             <-----------------AGL3 <---------ANAC58       --------->ANAC46--------->HSFB2a(2) -->ANAC58            ------->TEIL           ------>NtERF2          --------->TOE1(2)<---------HSFB2a(2) ->DOF2           --------------->AtSPL8<----------CDC5     ----------->GT1 <-----------GT1<---------ZAT14   attatccaaaaatgtgcaagtatggaccttaattggtgtctcgctgaggcctgcgggtaaaatagtgaaacacacgataaaccatttctagactgtagtt  309500  Previous    Next  AGI:  At1g01880.1    Description:  DNA repair protein, putative. Identical to Flap endonuclease GEN-like 1 (GEN1) [Arabidopsis Thaliana] (GB:Q9LPD2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48900.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO24472.1); contains InterPro domain XPG N-terminal; (InterPro:IPR006085); contains InterPro domain XPG I; (InterPro:IPR006086); contains InterPro domain Helix-hairpin-helix motif, class 2; (InterPro:IPR008918); contains InterPro domain DNA repair protein (XPGC)/yeast Rad; (InterPro:IPR006084) Range:  from: 306558    to: 308991    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01890.1    Description:  pre-tRNA. tRNA-Lys (anticodon: CTT) Range:  from: 309275    to: 309347    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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