Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------ANAC55(2)                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                                                    <-------TEIL                                                                                   --------->ARR14(1)                                                                                   --------->CCA1(2)                                                                                  --------->ARR11(1)                                                                                  <---------ARR14(2)                                                                                  <---------GLK1(2)                                                                        <---------ARR11(3)                                                        --------->AHL20(2)        --------->ARR14(2)                                                        <---------AHL20(2)     <---------WOX13(1)                                                      <----------DOF2   <---------ARR14(2)                                                      --------->TOE2(3) --------->ARR11(3)                             <----------DOF2   <---------YAB1          <---------CCA1(2)                         <----------DOF2      --------->AHL20(2)       --------->GLK1(1)          ---                    <----------DOF2           <---------AHL20(2)       <---------GLK1(1)         ---- ---->DOF2    <-----------RAV1(1)          --------->TOE2(3) <-----------GT1<---------YAB1       <---   agaaggaatcgacttagtggtgcttcactttcttttacttctatacattaaaattactttaatttacaactggatatcttgatagatacgcatacagata  282400                                                                                           <---------bZIP60(2)                                                                                           ==========                                                                                           <---------TGA1a                                                                                           <---------O2                                                                                           ==========                                                                                        ----------->HVH21                                                                                    ----------->HVH21                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                  --------->At4g35610                                                                                  <---------At4g35610                                                                                 --------->ARR14(2)                                                                                 <---------ARR14(2)                                                                                 <---------AGP1                                                            <-------GAMYB        <---------ARR11(3)                                                        <------MYB83             --------->ARR11(3)                                        <---------AHL20(2)  =========================================MYC_MYB                                       <---------AHL20(1)  <---------MYB46(3)    <-----------ARR10                                       --------->AHL20(1)  --------->MYB111(2)   --------->GLK1(2)    ---------->DOF2             --------->ARR11(3)      <------MYB46(1)         <------ZmHOX2a(1)   <---------AHL20(2)           <---------ARR11(3)     --------->MYB59  <----------DOF2<---------WOX13(1) ------>ICU4       <---------WOX13(1)<---------AHL20(2)--------->MYB111(1)    <---------TOE1(2) <---- ----->ANAC55(2) --------->ATHB12   --------->AHL20(2) --------->MYB46(2)    <---------AtLEC2   <---- ------ANAC55(2)<---------YAB1 --------->YAB1      <---------ZAT6       =============================bZIP_DOF   agtattaaaagcattgttttgattgagagagaatgatattatatatttgtgtaatgttaggttgttgttatattcttttgcaggatctgactgacatggg  282500                          ----------->GT1                 <---------MYB52(1)                >>>>>>>>>TAC1                --------->At4g35610                <---------At4g35610----------------->AGL2     --------->bZIP60(2)---------->DOF2   --------->DEAR3(1) <----------DOF2   --------->AtMYB61 <---------ANAC46   <---------ALFIN1  <---------ANAC58  --------->ATHB12  --------->MYB46(3) <---------ANAC58 <---------MYB52(1) ================================bZIP_DOF                         <---------ALFIN1                  - =======================MYC_MYB--------->MYB46(3)     <-----------HVH21   <----------DOF2     <------ -----ANAC58    <-------GAMYB<-----------GT1  <---------WOX13(1) --------->MYB46(3)       <---------ATHB12 -----ANAC58------------>AtMYB77   <-----------------AGL2      --------->AtMYB61        --------->WOX13(1)   ttgcaccacctcagagacagttggcttaaagtaacaatcccttattggattgaaattgtcagaaaccacaacccttcttttgctcaactccaatcacttt  282600                                                                                  ------>MYB83                                                                                  ------>MYB46(1)        <---------AHL20(2)                                                     --------->HSFB2a(1)       --------->AHL20(2)                                              <----------ID1  --------->MYB46(3)                                                   ----------->GT1   <---------MYB52(1) --------->ANAC58                   ---------->DOF2                   ----------->GT1   <-------GAMYB --------->ANAC46                 <------ZmHOX2a(2)                 ---------->DOF2  ------>ZmHOX2a(1) --------->ANAC58                <---------ARR11(3)           ----------->GT1  <---------HSFB2a(1) ----->NtERF2                    --------->ARR11(3)          ------------------------>ANAC81 ----DOF2<-----------GT1     ---------->DOF2                ---------->DOF2  <-----------GT1       --   gccacccaattttatctcattcattttgcaaaaaagatcaaagagagagagagagagagagagaaagaaaaaaaggaaaaaaccttcctccgttacaacc  282700                                                     <-------GAMYB                                              --------->ARR14(2)                                            --------->HSFB2a(1)                                            --------->HSFC1(2)                                            <---------HSFB2a(1)                                            <---------HSFC1(2)                                           <---------TOE2(2)                                    --------->HSFB2a(1)                                    <---------HSFB2a(1)      *TSS  <---------TOE2(3)            -----          ---------->DOF2           <---------HSFC1(2) --------->WRKY38(1)                    <------       ----------->RAV1(1)          --------->HSFC1(2)<---------MYB52(1)                    <--------      <----------ID1      <---------------AtSPL8  ------>ZmHOX2a(1)<---------TOE1(3)       ------>ZmHOX2a(1)  <------------CBF     ---------->DOF2     <---------TOE1(2) <---------TOE2(3)<----------DOF2 ------- ---------->CBF <-------TEIL <------ZmHOX2a(1)<---------ARR14(2) ---------->DOF2          --------->TOE2(3)   tcacaattgcaacaaagtttcatataaaagaggacagaaatttcgcaggttcctccgttgtctgaggtaaaggtttccttctttaactaattcctcagat  282800                                                    --------->HSFB2a(2)                                              <---------ARR14(2)                                              <---------AGP1 ----------->GT1                                              <---------ARR14(3)                              --------->GLK1(2)<------ZmHOX2a(2)                              <---------ARR11(3)    <---------HSFB2a(2)              ----------------                              --------->ARR11(3)------>ZmHOX2a(2)           ------->GAMYB                        <---------AHL20(2)    --------->ARR14(3)           --------->MYB46(3)         <---------MYB46(3)  --------->RVE1(1)--------->ARR14(2)          --------->ANAC58     --------->ATHB12   --------->AHL20(2)    <---------ARR11(3)          --------->ANAC58 ------>HVH21       --------->AHL20(2)        --------->ARR11(3)         ------->GAMYB ---At4g35610       --------->AHL20(1)        --------->GLK1(2)         --------->MYB46(3)          - ---RAV1(2)         <---------AHL20(2)       <------ZmHOX2a(1)          <---------MYB55(2)         -- -->At4g35610      --------->AHL20(2)        <---------GLK1(2)          <---------MYB111(2)      ----   gacctcttgatttgttggaaaaaaaattaaaaaatctgtttcatacaggatcttggagaaggaaggaaacaacaacaaccaaaaaaaaaccaaaaaaaaa  282900                               <---------HSFB2a(1)                              <---------GLK1(1)                            <------ZmHOX2a(1)                     <-----------HVH21                                    <---------ZAT18 -------->ANAC81    <----------DOF2                                      <---------ANAC46 ---------->GT1  <---------ARR11(3)                                    <---------ANAC46 --------->GT1   --------->ARR11(3)<---------ETT(2)  <---------YAB1   --------->ALFIN1              < ------>DOF2--------->AHL20(2)--------->GLK1(1)--------->ICU4       <-----------RAV1(1)             <   aaagataaaacaaaaaaaatgtctttcacaggaactctcgacaaatgcaatgtttgtgataagacagtctatgtggtggacatgttgtccattgaaggaa  283000                                                                                          --------->YAB1                                                                                         <---------YAB1                                                                                        <---------ARR11(3)                                                         --------->YAB1                 --------->ARR11(3)                                                         <---------ICU4         ------>ZmHOX2a(2)                                                        <---------ATHB12       <------ZmHOX2a(2)                                                        --------->ICU4        <---------ARR14(2)                                                    <---------ZAT18           <---------AGP1                          ------->TEIL              --------->ZAT14           --------->AGP1                       <---------REM1(1)            <-------TEIL              --------->ARR11(3)                       --------->ALFIN1             --------->ZAT18           <---------ARR11(3)                     <---------At4g35610         --------->At4g35610          --------->ARR14(2)                     --------->At4g35610         <---------At4g35610         <---------CCA1(2)   -------->P      <-----------RAV1(2)         <-----------RAV1(2)          ----------->ARR10   <---- ---------ANAC58<---------ANAC58             <-----------HVH21        <---------ANAC58 --------->YAB1 ---------ANAC58<---------ANAC58   ---------->DOF2  <---------ZAT14   <---------ANAC58<---------YAB1   tgccttaccacaagtcttgcttcaggtgtacccattgcaaaggaacccttcaggtgcactcattactcattttcttgttagatcttctatgatcatatta  283100                                                                                                <----                                                                                                -----                                                                                                -----                                           ------>ZmHOX2a(1)                                   <-----          <<<<<<<<<GATA-1  <---------At4g35610                                              ---------       <---------AHL20(2)  --------->At4g35610                                              --------- -----AHL20(2)           <-----------RAV1(2)              <---------------AtSPL3            ---------   tatcaacaatttatctatgtgttgatggcagatgagcaactattcctccatggacggagttttgtactgcaagactcattttgagcaactcttcaaggaa  283200                                                                                    <---------ICU4                                                                                    --------->YAB1                                                                                   <---------YAB1                                                        ------->TEIL              <---------ARR11(3)                                                        <---------ARR11(1)       --------->YAB1                                                       <---------ARR14(1)       --------->ICU4                                           --------->RVE1(1)                  <---------ICU4 -----ARR14(2)                            --------->ARR11(3)                  --------->YAB1 ---->GLK1(2)                           <---------AHL20(2)                   <---------YAB1 ---->ARR14(2)                         --------->AHL20(2)                    --------->ICU4 ----GLK1(2)                        --------->YAB1     <---------CCA1(2)   <---------ICU4 >ANAC46                    <---------GLK1(2)  ----------->HVH21           --------->YAB1 >ANAC58  --------->At4g35610      <---------YAB1      <---------GLK1(2)  <---------ATHB12 >ANAC58  <---------At4g35610 <-------TEIL<---------ARR11(3)   <---------CCA1(2)<---------YAB1   <---   tctggcaatttcagcaaaaactttcaaccaggttcgtattataaaatctctgacatcgaatctctctatctttcaaatcatcatgatcataacaagtctc  283300  Previous    Next  AGI:  At1g01770.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN74802.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39542.1); similar to hypothetical protein OsI_024980 [Oryza sativa (indica cultivar-group)] (GB:EAZ03748.1); contains InterPro domain Protein of unknown function DUF1446 (InterPro:IPR010839) Range:  from: 278615    to: 282891    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g01780.1    Description:  LIM domain-containing protein. similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45800.1); similar to LIM domain protein PLIM2a [Populus tremula x Populus alba] (GB:ABK58466.1); contains InterPro domain Zinc finger, LIM-type; (InterPro:IPR001781) Range:  from: 282761    to: 284245    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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