Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->ICU4                                                       <---------At4g35610              --------->ANAC55(2)                                                  --------->CCA1(2)              --------->ANAC55(1)                                                 --------->ARR14(2)              --------->ANAC58  <---------TOE2(3)                                 <---------ARR14(2)              <---------ANAC55(2)----------->GT1                                  <---------GLK1(2)       ---------->DOF2----------->GT1                                        --------->ANAC58     <-- >KAN4(2)     --------->ANAC58  <---------TOE1(3)         ----------->GT1    --------->ANAC58<-------   tgaaacagataaagaaacgtaatgaggcaaattgaaggtaaattacatggcaattgagaaatgtacaaatgcaagaggcacccagatttgagcttatatt  278000                       <---------At4g35610                       ----------->RAV1(2)                       --------->At4g35610                   <---------ARR14(2)                   --------->ARR14(2)                   ------->TEIL             <---------ZAT2         <------ZmHOX2a(1)        ----------->HVH21        --------->ANAC46      --------->HSFB2a(2)   --------->ZAT6 ---------GT1--------->At4g35610                              ----------->TGA1        ----------->RAV1(2) --YAB1--------->LBD16 --------->ZAT2                         ----------->HVH21      -------->P   tgacttctccaggacagcttgaatctgctgactctagtattgagcttgtttcgctatcaattctctgacgcttggcttcattactcttacctgaagtcaa  278100                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               ------                                          ----------->RAV1(2)                                <-------                                      --------->ARR11(3)                                 ------>NtERF2             <---------LBD16    <---------YAB1                                        --------->LBD16          ------->TEIL     ----------->RAV1(2)                                        ------->PIF5         <---------GLK1(2)--------->GLK1(2)      <------NtERF2                        <-------PIF5 --     --------->LBD16      ------->TEIL<---------ARR11(3)                             --------->O2 ---     <---------At4g35610 --------->ARR14(2)     ------>NtERF2                        <---------O2 <--     --------->At4g35610 <---------ARR14(2)    <---------ETT(2)                     <---------LBD16--   --------->MYB46(3)    --------->ARR11(3)    --------->ETT(2)   --------->GLK1(2)<---------ALFIN1--   ttgcatccgctgaatctcggaatagaagaacctgatgagagctcttctggcgacaacttcggcatgagaatcgttcacaatgtccccacggggactcagc  278200           ------->GAMYB           <---------ZAT18        --------->MYB52(1)        ---------->DOF2      <---------MYB52(2)     ------>MYB83     ------>MYB46(1)   --------->MYB46(3) --------->PCF2 --->At4g35610                                     <---------ZAT14 ----At4g35610                  --------->ANAC58   --------->At4g35610 ----ZAT2 --------->ANAC58      --------->ZAT6 <---------ARR14(2) --->ZAT2 --------->ANAC58      --------->ANAC58   --------->ZAT18 ----RAV1(2) ------->TEIL     --------->MYB52(1)   --------->ZAT14 ------->MYB46(3)       <-----------HVH21      --------->ARR14(2)                                  -- ------>At4g35610      --------->ANAC46     <---------ANAC46        --------->At4g35610     --------- -------At4g35610      --------->DEAR3(1)   <---------ANAC58  <---------YAB1               ---------- ------->DEAR3(1)     <------NtERF2         <---------ANAC58  ------>ZmHOX2a(1)         --------->YAB1 --------->HVH21   --------->PCF5        <----------DOF2  <---------ARR11(3)      >>>>>>>>>MYB2 -----   agcgacccactaacgcacttggtccccgtccctaacgctatcactttcgggtctgcacaaaatcctaattagctctaaatcgaaaaccaaaaataaagca  278300                                                           --------->ANAC58                                                           --------->TGA1a                                                           --------->O2                                                           --------->ANAC58                                                           <---------TGA1a                                                           <---------O2                                                           --------->ANAC46                                                      <---------bZIP60(1)                                                 ----------->GT1                                                <---------DEAR3(1)                                               <---------ORA47(1)                                              ----------------------->TaNAC69(2)   <---------HSFB2a(2)  ----------->HVH21                ---------->DOF2--------->At5g28300              --------->HSFB2a(2) ------->DAG2                      ==================================bZIP_DOF    <---------LBD16 >DAG2    <---------ARR11(3)      <------ZmHOX2a(1)   --------->bZIP60(1)<-----------GT1            - >DOF2    --------->ARR11(3)--------->CCA1(2) <------ZmHOX2a(1)    <---------TOE2(3)      <---------- ----->DOF2          <------ZmHOX2a(1)       ----------->HVH21 ----------->RAV1(2)<---------LBD16 ---   aagagtgacagagaccttgggaaggagaagagacgaggaaagcggagaggacggtgacttcacgtccctgaggttttcccttcttcgggagagacatgta  278400                                     ------>ZmHOX2a(1)                                  <---------ATHB12      <-----------GT1            <---------ARR14(2)                              --------->YAB1 <---------RAP2.6(3)             --------->ARR14(2)                         <-------TEIL -------->RAP2.6(2)            <---------ALFIN1                        <---------MYB52(1) -------------TaNAC69(2)      --------->LBD16     <---------YAB1      <-------GAMYB             ----- ------>At4g35610        <----------DOF2------>ZmHOX2a(1)             <---------At4g35610      ------   agccgaaataaccttctctgatactgtctttccccaatcctcctccattgctacgattcccacaaacaagtccgttgattcattcatgctactcaaaaaa  278500              --------->LBD16                                                  --------->YAB1             --------->ANAC58                                           <---------TOE2(3)             --------->ANAC58                                          ---------->DOF2            <---------LBD16                                          <---------YAB1          --------->ARR14(2)                                       -------->ATHB1         <------ZmHOX2a(1)                                        --------->AHL20(2)    <-------TEIL                                                  --------->ICU4  --------->ARR14(2)                                              <---------YAB1                 ----  <---------ARR14(2)                                              <---------AHL20(2)             ---- ---->DAG2<---------ARR14(2)                        ----------->TBP<---------ICU4     ------------>CBF ---->DOF2--------->PCF2----------->GT1   ------>ZmHOX2a(2)       --------->AHL20(1) <<<<<<<<<<<<<<<<   agcagattcaaggacccgcatgaaaatagttataagtttagggatcgttttagtatatatactacaaaattattaaagtaatcaaaatcccaatgggata  278600                                                                               ----------->HVH21                                  --------->ANAC58                           =============HOX2a_HOX2a                                  --------->O2                              --------->TOE2(2)                 <-----------TGA1 --------->ANAC58                          --------->TOE1(2)                 <-----------HVH21--------->ANAC55(2)                     <---------ATHB12                --------->ANAC46  --------->ANAC46                       ------>MYB83 <---------O2                <---------ANAC58  <---------O2                           <---------ARR14(2)   =========================================bZIP_DOF                     ------>MYB46(1)   <----------DOF2<---------MYB52(1)                                  --------->MYB46(3)  <----------   --------->TOE2(3)              <---------TGA1a                   --------->MYB52(1)--------->O2 ----->ANAC58   --------->ANAC55(2)                               <---------MYB59  ------>ZmHOX2a(2) ----->ANAC58   <---------ANAC58  --------->TGA1a           ==============================HOX2a_HOX2a <LFY          *TSS           <-----------HVH21             ------>ZmHOX2a(1)------>ZmHOX2a(1)   agcatctttaactcacttccgtcactcgcttccttcacgtctctctcccaaaattcaaattcctcaggcctaaccaatcctgtgatcgacgtcgtcaaat  278700                             ------>ZmHOX2a(2)                             ===============HOX2a_HOX2a                       <---------AtLEC2                       <---------ANAC58     --------->GLK1(2)                       <---------ANAC58    <---------GLK1(2)                 ===========================HOX2a_HOX2a                 ------>ZmHOX2a(2)   ------>ZmHOX2a(1)            --------->LBD16<---------ARR11(3)                                                <-------           <---------ANAC58--------->ARR11(3)                                   --------->GLK1(2)           <---------ANAC58--------->ARR14(2)                                  <---------GLK1(2)           <---------ANAC55(2)       <-----------RAV1(1)                       --------->ARR14(2)  ---------->DOF2=====================HOX2a_HOX2a                      --------->DOF5.7(2)   <------- -HVH21    --------->ANAC55(2) ------>ZmHOX2a(1)              -------->P ---------->DOF2     <-------   attcaaaagcagtccgtgatccattgcatgatcctcttcctgtgggattcttactctcatggctaacccagacgttaaagagattctctgcgattgtgtg  278800                                         --------->AHL20(2)             <---------WOX13(1)                                       <---------MYB52(1)             --------->ATHB12                                      <-------GAMYB                  <---------YAB1                                      --------->LBD16            --------->ATHB12             ------- --ANAC58                            ----------->GT1          <---------At4g35610         --------->ARR14(2) --ANAC46                    <-----------GT1             <---------ANAC58                 <---------ARR14(2) --ANAC58       <-----------GT1 <----------DOF2          <---------ANAC58                 --------->GLK1(2)   ataaacttggtaagaatttttcattttgttttttcttttccgttaaaattcaatccattgctggagatgatttgattgaatttcagagagagaatccgaa  278900  Previous    Next  AGI:  At1g01760.1    Description:  RNA binding / adenosine deaminase. similar to unnamed protein product [Vitis vinifera] (GB:CAO39555.1); contains InterPro domain Adenosine deaminase/editase; (InterPro:IPR002466) Range:  from: 276266    to: 278448    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01770.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN74802.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39542.1); similar to hypothetical protein OsI_024980 [Oryza sativa (indica cultivar-group)] (GB:EAZ03748.1); contains InterPro domain Protein of unknown function DUF1446 (InterPro:IPR010839) Range:  from: 278615    to: 282891    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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