Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->TOE2(3)                        <---------YAB1    <-----------GT1       <---------AHL20(2)                                     <------ZmHOX2a(2) ------->DOF2   ----------->RAV1(1)      <---------ARR11(3)                      ==================== --ZmHOX2a(2)--------->ANAC58         --------->MYB46(3)                        --------->ARR11(3) ----ARR11(3)--------->ANAC46 <---------AHL20(2)                                <---------ARR11(3) --->ARR11(3)--------->ANAC58 --------->AHL20(2)                          --------->YAB1----------->GT1   caaagttaaccatacatgccacaattgtttattttaatcaacaaatcttaagagtagtagtagagaggttctctattcataagatcaatattgtaaattt  232100                                                                                              -------                                                                                           --------->TOE2(3)                                                                                           --------->TOE1(3)                                                                                           --------->YAB1                                                                                         --------->GLK1(2)                                                                                         ------->TEIL                                                                                         --------->ARR14(2)                                                                                         <---------ARR14(2)                                                                                         <---------ARR11(1)                                                                                        <---------CCA1(2)                                                                                        <---------ARR14(1)                                                                                     ----------------              <----------DOF2     <----------DOF2                             --------->CCA1(2)    ------>ZmHOX2a(1)        ---------->DOF2                                 --------->ARR11(3)   ---  ------>ZmHOX2a(2)         --------->YAB1                                   --------->ARR14(2)   --- ==========HOX2a_HOX2a     <---------ATHB12                                  <---------ARR14(2)   ---   gtgatcctcccctaagctttaaaactctaatcaaagctttaaaatttgaaagtattgttctggctaatagttatccaaggatatggtatcgaatcttaaa  232200                                                                         --------->YAB1                                                                        <------ZmHOX2a(2)                                                                     --------->DEAR3(1)                                                                    <------NtERF2        --------->ANAC46                                       --------->ANAC46              --------   <---------ALFIN1                                            --------->ANAC58            --------->YAB1 <---------ALFIN1                                ----------->GT1   ------>NtERF2           <---------ICU4 --->DOF2--------->LBD16                    --------->ANAC46   --------->ANAC58           <---------YAB1 ------->TaNAC69(2)                       --------->ANAC58   ---------->DOF2<---------GLK1(2)<------- ------>ANAC58                            --------->ANAC58  <---------ATHB12--------->ARR14(2) ------>ANAC58                            --------->ANAC46--------->WOX13(1)<---------ARR14(2) ------>ANAC46                ---------->DOF2  --------->MYB52(1)--------->MYB46(3)       --------->ICU4   acgccactctccgaaattttaaaactcaaacagaaagaccactcacacaaaacgaaaattcaatcaagccaccgatcatattctcaaatttcatgatgat  232300                                                                       ----------->GT1            ---                                                                     ---------->DOF2<---------ANAC46      -------->P                      ---------->DOF2               <------ZmHOX2a(1)      <---------    --------->MYB46(3)      --------->ANAC58                      --------->MYB59   ----------->GT1 ->ICU4   <----------DOF2   --------->AtLEC2               ----------->GT1     --------->YAB1   ----- --YAB1   <---------DAG2    --------->ANAC58     ---------->DOF2--------->ICU4<---------YAB1    -----   tttaaaacaacccttttccaagggtttgtcatgcaattctcaaagaaaacaaaaagaagaagagaaattaggaaagtagaatgatagtgtatattaccga  232400                                    <---------TOE1(1)                                 <---------SPL7                              <-------TEIL ------>ZmHOX2a(2)                             --------->ARR14(1)                     ------>ZmHOX2a(1)    --------->At4g35610                     =============================HOX2a_HOX2a               <---------At4g35610  <---------TOE2(1)            --------->At4g35610--------->MYB59          ------>ZmHOX2a(2) <---------ARR14(2)                                 <---------ANAC58          ==================HOX2a_HOX2a  --------->ARR11(3)                    <---------ANAC58         ===================HOX2a_HOX2a  <---------ARR11(3)                <----------DOF2         <------ZmHOX2a(2)  --------->ARR11(1)                             <---------DAG2 -------->HVH21--------->At4g35610 --------->SPL7                    <---------ICU4               --- --GT1  --------->ARR14(2)  --------->ARR14(2)                       --------->ATHB12             <-- ->MYB83<---------ARR14(2)  <---------GLK1(2)      --------->GLK1(2)--------->ICU4            <------ ->MYB46(1) <---------At4g35610--------------->AtSPL3               <---------YAB1           --------   ctgatagcgagatcggctgcttcctctatagattcggtacgatgatctgagagactctgaacttgacttgatgattactttacttgtgatatcgatataa  232500         <---------AHL20(2)        *TSS      <---------AHL20(1)      --------->AHL20(1)      <---------AHL20(2)          --------->YAB1     --------->AHL20(2)          <---------YAB1 <---------TOE1(3)             --------->YAB1 <---------YAB1               <---------YAB1      --------->ANAC58                     <---------ARR14(2) <---------TOE2(3)          <---------AHL20(2)    --------->ANAC58                     <---------GLK1(2) ------>AHL20(2)           --------->AHL20(2)    --------->DAG2                        --------->ARR14(2) -------AHL20(2)           --------->ICU4       ---------->DOF2                   <---------ARR14(2) ---AHL20(2)            --------->ICU4     <---------LBD16                <---------TOE2(3)        -- ->AHL20(2)         ------------>CBF  --------->AHL20(2)     ---------->DOF2      --------->MYB52(1)   tttaagattatatttttagtggagcaatatttattatcaaaaaaattcggaaaagcaaatgtttaaagcgaaagtttaggtgaatatcggattttgaaat  232600                    <----------DOF2                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)                  <---------RVE1(1)                 --------->ARR14(2)                 <---------ARR14(2)                                   <---------ARR14(2)                 <---------ARR11(3)                              <-----------------AGL1                 <-----------ARR10                   <---------------AGL15                      -----                 --------->AGP1                      <----------DOF2  --------->ARR14(2)  --------->MYB46(3)                 --------->ARR11(3)                 <-----------------AGL1               ------>MYB46(1)                 --------->ARR14(3)                --------->ZAT18  <---------MYB52(1)   ------>MYB83         <---------AHL20(2)                      ------->MYC2  <---------WRKY12         ----------->RAV1(1)         --------->AHL20(2)                      <-------MYC3  <---------WRKY38(1)    --------->MYB46(3)     <---------GLK1(2)            <-----------GT1------->MYC3 ----------->HVH21   <---------MYB52(2) ------->ZAT6    <---------ARR14(3)              <-------MYC2<-----------HVH21    --------->MYB46(3)   atcactagaatttttttaagatcttttccagcattttaactataggtccaacgtgctctaatgggtcaccggtatcggcccataacaaaccaacaacaac  232700            <-----------GT1        <---------AHL20(2)       --------->AHL20(2)                                               <---------DAG2       <---------AHL20(2)                                     --------->YAB1      <---------WOX13(1)              <----------DOF2       <-----------GT1          --------->ALFIN1   <---------YAB1                <----------DOF2        <----------DOF2 <----------DOF2 ---->MYB46(3)                <-----------GT1<---------MYB52(1)   --------->TOE2(3)  <---------ZAT6 <   aacttctgatttattttcaagactcgtttttttttcttttcttttcagttaagctagacttttatcaacatcaactttatattagaagtgttagcatcag  232800           --------->WOX13(1)                                                      --------->YAB1      <---------YAB1                                                            --------->TOE2(3)    <-----------GT1  <---------TOE2(3)          --------->AHL20(2)   <-----------GT1   <---------YAB1 <---------AHL20(2)            <---------AHL20(2)  ----------->HVH21 ---------YAB1--------->YAB1     --------->MYB52(2)    ------>ZmHOX2a(1)  <----------DOF2 -----------   tttttattactatcagtcatattaatgaaaaattttagttgctactatatataattcctctaaaaaacttgtgacccttttacattagtaatctgtaaaa  232900                                          <---------YAB1                                       --------->ICU4                                       <---------YAB1                                     --------->YAB1                                     <---------ICU4                              --------->GLK1(2)<-----------RAV1(2)                              <-----------ARR10<---------LBD16                              --------->ARR11(3)                              --------->ARR14(2)                                        -------->HAHB4                              <---------ARR11(3)    ---------->DOF2                     --------->YAB1                     <---------HSFB2a(2)<---------ICU4   --------->ANAC58              <---------YAB1                     --------->HSFB2a(2)--------->YAB1   --------->ANAC58            --------->YAB1 >GT1          ------->TEIL   <---------ARR14(2)  <------ZmHOX2a(1)   --------->YAB1<---------------AGL15   tactagttggacatatgtatgttatagaagaaaatctgatcatcatgactcaggaaaagaagccaagtctattcatggtttcatgtctaataatagagag  233000  Previous    Next  AGI:  At1g01640.1    Description:  speckle-type POZ protein-related. similar to speckle-type POZ protein-related [Arabidopsis thaliana] (TAIR:AT3G56230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41466.1); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) Range:  from: 230994    to: 232508    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01650.1    Description:  peptidase. similar to protease-associated (PA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63690.2); similar to protease-associated (PA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39622.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62834.1); similar to growth-on protein GRO11 [Euphorbia esula] (GB:AAL14628.1); contains InterPro domain Protease-associated PA (InterPro:IPR003137); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, signal peptide peptid Range:  from: 232841    to: 237817    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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