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UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                          <------MYB83
                                          <------MYB46(1)
                                         <---------TOE2(3)
                                         --------->MYB59--------->YAB1            ---------->DOF2
<-----------GT1                      <--------HAHB4    <---------ATHB12       <----------DOF2
------>GT1                          <---------YAB1 <---------ZAT18     <---------------------WRI1
 
gttttacttcaagtgttccatcttcttggtattgaatgtattattaggtttttgtgcaatcgtagtcgtttgtatgagatgctttgaaagtagtagttgt  201700
                                                                                       --------->LBD16
                                                                                      <---------ANAC55(2)
                                                                                      <---------ANAC55(1)
                                                                                      --------->ANAC55(2)
                                                                                     ------>ZmHOX2a(2)
                                         <----------DOF2                             <-------TEIL
                                       <---------YAB1                               <------ZmHOX2a(2)
                                      <---------ARR14(2)                --------->At4g35610
                                      --------->ARR11(3)        --------->TOE2(3)  --------->AGP1
                                      <---------ARR11(3)     ----------->RAV1(1)   <---------ARR11(3)
               ------>MYB83          --------->RVE1(1)    ------>ZmHOX2a(2)        <---------ARR14(2)
               ------>MYB46(1)      ------->TEIL         <------ZmHOX2a(2)         --------->ARR14(2)
             <---------MYB59     <---------YAB1         <---------ARR14(2)         <---------AGP1
          <-----------GT1     <---------AHL20(2)        --------->ARR14(2) --------->At4g35610     <
    <---------TOE1(3)      --------->AHL20(1)           <---------ARR11(3) <---------At4g35610 -----
    <---------TOE2(3)      <---------AHL20(1)           --------->ARR11(3)<-----------RAV1(1) <-----
  ---------->DOF2         <---------AHL20(2)        --------->YAB1      <---------At4g35610   ------
 
ataagtaaaggttttaccaacttatctatatatattatgaatatctttgaagctatcaagatcccaacatttatcaactgctgctagatccgtattatcg  201800
      ----------->GT1
  --------->MYB59                                                           <-----------GT1
<---------MYB52(1)                                              <---------At4g35610
-------GAMYB                                                    --------->At4g35610
------->AtMYB77              <------ZmHOX2a(2)               <---------At4g35610
----ETT(2)                  <---------ARR11(3)        <---------GLK1(2)<---------YAB1     <-------TEIL
--->ETT(2)            ---------->DOF2      <---------ATHB12  --------->At4g35610      ----------->GT1
 
acagttagatcgaaaattcacagagaaaagagatcaaagacttcaaatcaaacagaagattatcaactgctgatatgattttcaatatacagttacattc  201900
                    --------->MYB52(1)
               --------->AHL20(1)
               --------->AHL20(2)
               <---------AHL20(1)                                             <---------MYB52(1)
               --------->ARR11(3)                                            <-------GAMYB
               <---------ARR11(3)                               <---------TOE1(3)
               <---------AHL20(2)               <---------ICU4  <---------TOE2(3)
              --------->AHL20(2)              <---------GLK1(2)<---------At5g28300
          --------->AHL20(2)             <---------STY1(2)   <---------ARR14(2)
     --------->ARR11(3)                  --------->At4g35610 <---------MYB52(1)       --------->ICU4
     <---------ARR11(3)           <---------ANAC58           --------->ARR14(2)<---------MYB46(3)
 ---------->DOF2   <-----------GT1<---------ANAC58 <-----------GT1    --------->KAN4(2)
 
gactaaaagattttaaaatatattaccggtttgattttcttgttagctagattattacatttcagttacggtttattctcggttgtgcaaaaatgaagtt  202000
                 <-------GAMYB
                <------MYB46(1)
                <------MYB83
               --------->MYB59
             <---------MYB52(1)
           <------MYB46(1)
           <------MYB83                               <---------ANAC58
           <---------DEAR3(2)                         <---------ANAC58
          --------->MYB59                             <---------ANAC46
        <---------MYB52(1)                       <------------CBF
      <------MYB46(1)                      --------->LBD16
      <------MYB83                        <---------ANAC46                   --------->TOE2(1)
      <---------DEAR3(2)             <---------MYB46(3)       ------------>CBF<---------SPL7     ---
     --------->MYB59 --------->ARR11(3)  <---------LBD16 --------->REM1(2)  <------NtERF2---------->DOF2
 
gaattagttcggttcggttcggttgatattgggattgagtttgttccggttacattgacttgtagaccaatatgaagtcgtcgtactcagagaaaagacg  202100
                                          --------->HSFB2a(2)
                                          <---------HSFB2a(2)
                                      <---------SPL7
                                     --------->ETT(2)
                --------->ALFIN1   *TSS  <---------TOE1(1)
              <---------ANAC46     <-----------HVH21
            <---------ANAC46    --------->ANAC55(2)
            <---------ANAC58    --------->O2                                          --------->CCA1(2)
          <-----------HVH21     <---------O2                                          <------ZmHOX2a(2)
     ------------>CBF           <---------TGA1a                                      --------->ARR11(3)
    --------->ANAC58            --------->TGA1a                                      --------->AGP1
    --------->ANAC58           <---------LBD16                                       <---------ARR11(3)
   --------->DAG2<-------GAMYB--------->MYB52(1)                        <-----------GT1       <-----
  ========================================bZIP_DOF                 <---------YAB1    --------->ARR14(2)
  ---------->DOF2=========================MYC_MYB                <---------At4g35610 <---------ARR14(2)
-------->GT1<---------ANAC58 ----------->HVH21                <<<<<<<<<TBF1      ---------->DOF2   <
 
aagaaaaaagcaatgtcgtgtgttgattttcactcacgggtcgtccgagaagacgaagactcttcttcttctgatttgcccttcaaaagatccaaacttt  202200
                                       ------>MYB46(1)
                                       ------>MYB83
                                     <---------MYB59               ------>ZmHOX2a(1)
        <----------DOF2              ------->GAMYB           <-----------ARR10
     <---------YAB1                  --------->AtMYB61       <---------ARR11(3)
  <---------MYB52(1)                --------->MYB46(3)       --------->ARR11(3)
--------->ANAC55(2)                --------->ANAC58         <---------GLK1(2)
--------->ANAC46                   --------->ANAC58      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
--------->ANAC58                  ------->GAMYB       --------->ANAC46
--------->ANAC55(1)              <---------MYB55(2)   --------->ANAC58                            <-
--------->ANAC58                 --------->MYB46(3)   --------->ANAC58               --------->MYB59
------HVH21                      <---------MYB111(2)  --------->ANAC55(1)   <---------At4g35610   --
---------TOE1(2) <----------DOF2 <---------MYB111(1)<---------ALFIN1        --------->At4g35610  <--
 
cacacgttattcttttccctctttttataaaccccaacaaccaaacaagtctccaacacgccaaaatctcctctgtttcatctcaagttagttcaattca  202300
                                                                               ------->GAMYB
                                                                            ----------->RAV1(1)
                                                                          --------->At4g35610
              <----------DOF2                                        --------->bZIP60(1)
 <----------DOF2                                                     ----------->HVH21      <-------
--------ARR11(3)                                                     <---------YAB1 ----------->GT1<
------->GLK1(2)      <-----------RAV1(1) ----------->GT1             <---------bZIP60(1) --------->ICU4
-------GLK1(2)<---------DAG2  ---------->DOF2                  <---------DEAR3(1)  <------ZmHOX2a(1)
 
gaatctttgagtttgaacttttttttgttgggagaaagagagaaatgtcaatagagaaaccattcttcggtgatgacagcaacagaggagtaagtatcaa  202400
                <---------ZAT14
             ----------->GT1
             <---------ANAC46
           <---------ZAT14                                                        --------->At4g35610
           --------->ZAT14                                                        <------NtERF2
           --------->ZAT18                                                  --------->RAP2.6(3)
           <---------ZAT18                                                 --------->ARR14(2)
     <---------MYB52(1)                                                    --------->MYB52(1)
    <-------GAMYB                                             ------>ZmHOX2a(1)--------->At4g35610
   <---------MYB46(3)                             ---------->DOF2          <---------ARR14(2)
<---------MYB46(3)            --------->GLK1(1)<---------HSFB2a(2)        ------>ZmHOX2a(1)      <--
--YAB1  <---------ANAC46      <---------GLK1(1)--------->HSFB2a(2)     ---------->ID1       --------
---------AtMYB61--------->ZAT14     <----------DOF2--------->DAG2------>ZmHOX2a(1)<---------At4g35610
 
tggtggtcgttatgtgcagtataatgtctatggaaatctctttgaagtttctaaaaagtatgttcctcctcttcgtcctatcggcagaggcgcttctggc  202500
     <--------P           <----------DOF2            --------->CCA1(2)
----NtERF2         <-----------RAV1(1)              XXXXXXXXXXXXXXXXXXXXX>MIR447A/B                <
->HSFB2a(2)--------->At4g35610                 <----------DOF2       ---------->DOF2            <---
 
atcgtctggttagcatctaaaactgttgtcttttttttttgagtttttagctttagagatgagacattttgttaaaggctaagtttgtgctcaaaacttg  202600
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AGI:  At1g01550.1   
Description:  BPS1 (BYPASS 1). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46080.1); similar to unknown [Populus trichocarpa] (GB:ABK94247.1)
Range:  from: 199639    to: 201775    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At1g01560.1   
Description:  ATMPK11 (Arabidopsis thaliana MAP kinase 11); MAP kinase/ kinase. Identical to Mitogen-activated protein kinase 11 (MPK11) [Arabidopsis Thaliana] (GB:Q9LMM5); similar to ATMPK4 (MAP KINASE 4), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G01370.1); similar to double HA-tagged mitogen activated protein kinase 11 [synthetic construct] (GB:ABG54338.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (Int
Range:  from: 202136    to: 204335    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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