Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->AHL20(2)                                                                             <---------AHL20(2)                                                                          --------->YAB1                                                                          --------->AHL20(2)                                                                          <---------ICU4                                                                          <--------ATHB1                                                                          <---------AHL20(1)      <---------AHL20(2)                                                  <---------AHL20(2)  <------ZmHOX2a(1)                                                      --------->ICU4 ---------TOE2(3)                                                        <---------YAB1 ---DOF2                                                               --------->YAB1              -- ------->AGL15 ---------->DOF2    <----------DOF2      ----------->GT1<---------AHL20(2)          --- -GT1 --------->AHL20(2) <-----------GT1   <---------ATHB12          --------->AHL20(2)   -----------   ttgaggaaataaatatgcaaaggaggtttaccatttcttttacaaatcaaaaacaaattgtgaaacacttatataataattttttatctaaattgaaaaa  193300                                                                                          <---------RAP2.6(2)                                                                                          <---------DEAR3(1)                                                                                         <---------LBD16                                                                                    <----------DOF2 -------->DOF2---------->DOF2                  --------->TOE2(3)              <---------ANAC55(2)  -- ------>AHL20(2)--------->ICU4               -------->P      --------->ATHB12 --------->ANAC46     <- >GT1   ----------->GT1            --------->TOE2(3)  ---------->DOF2        <---------LBD16  <------   taaaagagagaagaaataaagattagataatgccaaaacttaaaacttacctcagttaaagactcattgagcatttgaatacggagctttgtgcggcttt  193400                                                    <---------ANAC58                                                    <---------ANAC58                           ------                                               ----------->GT1                                 xxxxxx                                               --------->ANAC58                             ---------                             --------->ANAC58  --------->ANAC58                            --------->LBD16                             --------->ANAC46  --------->ANAC55(2)                        <---------HSFB2a(2)            <---------MYB46(3)              --------->WRKY18(1)           ---------->DOF2 --------->HSFB2a(2) ---------->DOF2 <---------ANAC46  ---------->DOF2<-----------GT1        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------->At4g35610       <-----------GT1   <-----------HVH21         <---------WRKY18(1) <---------LBD16 --------At4g35610  <---------ANAC46     --------->ALFIN1  <---------TOE2(3)         <----------DOF2 ----DOF2<-----------RAV1(1) --------->ANAC58  <---------ANAC55(2)<---------AtLEC2   <---------DAG2   cagcaaagtttgtgttgttgtgtcttataacacgccctaaagagtggtcaagtaacttgttaacatttggatgaccaaaagagtatgcttttcccgaggg  193500                                --------->DAG2                                      <---------ANAC55(2)                            --------->ANAC55(2)                                     --------->ANAC55(2)                            <---------ANAC55(2)                                     --------->ANAC55(1)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     ------>ZmHOX2a(2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <------ZmHOX2a(2)                        <-----------TGA1                            --------->ARR14(3)                        <-----------HVH21                           <---------ARR14(3)                       --------->bZIP60(2)                          <-----------ARR10                       --------->ANAC46                             <---------GLK1(2)                       --------->O2                <----------DOF2  --------->AGP1  --------->ANAC58                       xxxxxxxxxxxxxxxxxxx>smallRNA(l2)             --------->ARR11(3)                     <---------ANAC58             <---------DAG2    <---------ARR11(3)                     <---------ANAC58      --------->ZAT14          --------->ARR14(2)                    <---------LBD16        --------->ZAT18          <---------ARR14(2)                  <---------ARR14(2)       <---------ZAT14          <---------AGP1  ----------->GT1                  --------->ARR14(2)<-------TEIL ----------------->AGL1----------------------->TaNAC69(2)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <---------CCA1(2)--------->ANAC58 ----->GT1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            ----------->ARR10 --------->ANAC46 xxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ARR14(1)         <------ >LBD16 <---------YAB1--------->LBD16 ---------->DOF2      ---------->DOF2<----------DOF2     <------   tgaaaacacgattatcgcaatttccgcgtcacataaggtgcaaagttcactgccttttttgaaaagaccagatcttctttttgaaaacgtaacttgaagg  193600                 <-----------GT1                     --------->ANAC46        <------MYB46(1)                              --------->ANAC58                               -        <------MYB83  ------>MYB46(1)                --------->ANAC58                               <      <---------MYB52(1)                        <----------DOF2                                     <    <---------MYB46(3)------>MYB83           --------->GLK1(2)        *TSS       ---------->DOF2    -    --------->ATHB12  -------->P            <---------ARR11(3)    <---------ARR11(3)               -- ---TOE2(3)   <---------ICU4                <---------GLK1(2)  <---------HSFB2a(2)     --------->DAG2 ---TOE1(3)  --------->ICU4xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->HSFB2a(2)    ---------->DOF2   tttgattcgttggtcatttttaccaactctatttttctacgaccaagattctttctcgccattttcgagatgttttgaacagaaaaagaaaagcgagttg  193700                                                                                     --------->YAB1                                                                         --------->ARR11(3)                                                                         <---------AHL20(1)                                                                         --------->AHL20(1)               <---------ANAC55(2)                                       <---------ARR11(3)       <---------ZAT6                                                  <---------AHL20(1) <---------YAB1--------->ANAC55(2)                                     --------->ARR11(3) -------->AHL20(1)                                                     <---------ARR11(3) ---------AHL20(1)                                                     --------->AHL20(1) ---------AHL20(2)         <---------AHL20(2)                       --------->AHL20(2) -------->AHL20(2)       <-----------TBP                        ---------->DOF2<-----------GT1 ------->AHL20(2)  <-----------TBP       <-----------GT1    <------------CBF<---------AHL20(2)  -----   attatattagagataataggtatttgtatttatagactaaattttacaaaatatgttttgagcattgaaagaaaatatttttttctatagtgatttataa  193800                                                                                              -------                                                                                             <-------         <---------YAB1        --------->AHL20(1)                                        --------->TOE2(3)      --------->ICU4     <------ZmHOX2a(1)               ---------->DOF2              ----------->RAV1(1) ---->ANAC46  <-----------GT1  --------->ARR11(3) --------->TOE2(3)           <---------AHL20(2)   gaaacaaaattatgaattaccactctaggagtatatattggtttacaaatttcgtcaataaaaggtatacaatattctattttatctccaacattatcat  193900                                                                               <---------AHL20(2)                                           --------->ARR14(2)             ------->MYC3                                           <---------ARR14(2)       <-----------GT1                                          <---------GLK1(1)      <---------ARR11(3)                                          --------->GLK1(1)      --------->ARR11(3)                                         --------->ARR11(3)      --------->AHL20(1)                                         --------->ARR14(2)      <---------AHL20(1)   <---------TOE2(3)                     <---------ARR11(3)    <---------ARR11(3)   <---------TOE1(3)       --------->AHL20(2) --------->ANAC46 <---------AHL20(1)  ---------->DOF2     --------->AHL20(2) <---------ARR14(2)    --------->ARR11(3) -->YAB1              <---------AHL20(2)<------ZmHOX2a(1)      --------->AHL20(1)  <-----------GT1 --YAB1  <---------At5g28300   --------->CCA1(2)       --------->TOE2(3)  <-------MYC3--------->ZAT6-   tttttaaagtttacagcctgtcaattttttaaaatatgggaaggatatccacaattttcttaaaaaatattttccatgtgtttattttccactatttttc  194000                    <----------DOF2           ===============HOX2a_HOX2a           ------>ZmHOX2a(1)           <---------DAG2           <----------DOF2       <---------ARR14(2)                                    <-------TEIL       <---------ARR11(3)        <---------AHL20(2)      <---------AHL20(2)       --------->ARR14(2)    --------->AHL20(2)         --------->AHL20(2)       --------->ARR11(3)    <---------AHL20(2)    --------->AHL20(2)   <---------ICU4  ------>ZmHOX2a(2)           --------->AHL20(1)                  --------->AHL20(1)   --------->YAB1--------->ARR11(3)            <---------AHL20(2)    ----------->GT1 -------->YAB1   <---------ARR11(3)            --------->AHL20(2)    <---------ANAC46              <-   tataatcaatatcctttttgatcttttatatttattttaagtgttcaaattttttatataaaattcatatagtgtatatatgaaatattatgtccaactt  194100                                                                   <---------AHL20(2)                                            ----------->GT1       --------->AHL20(2)              ---                                       ---------->DOF2     <---------WOX13(1)                   -----                                    <---------WOX13(1)   --------->ATHB12                <---------AHL20(2)                                  --------->ATHB12      <---------YAB1                   --------->AHL20(2)                                 <---------YAB1         --------->ICU4                <---------ARR11(3)       <---------YAB1        --------->AHL20(2)       <---------bZIP60(1)             --------->ARR11(3) ---------DOF2             --------->AHL20(2)         --------->bZIP60(1)     <----------DOF2 <------   acttttgtttttatagagcaaattgacaaaataatatgattgaaagttgataaatgacatgattgaaattttatgtccgactttccaagattttatttaa  194200  Previous    Next  AGI:  At1g01530.1    Description:  AGL28 (AGAMOUS-LIKE 28); DNA binding / transcription factor. similar to AGL23, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G65360.1); similar to putative MADS-box transcription factor [Arabidopsis lyrata] (GB:AAO42470.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 192640    to: 193670    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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