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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(1)
<-----------
GT1
<
--------->
ARR11(3)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(2)
<----------
DOF2
<---------
ARR11(3)
--------->
AHL20(2)
<---------
YAB1
---------->
ID1
<---------
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(2)
<-----------
GT1
<---------
YAB1
-
--------->
AHL20(2)
<---------
AHL20(2)
<<<<<<<<<<
GT-3b
--------->
ICU4
-
----->
AHL20(2)
<----------
DOF2
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
---->
AHL20(2)
--------->
ARR11(3)
<----------
DOF2
--------->
ARR11(3)
<---------
ATHB51
<
aaaaaataaatatatagaacttcttttattattttctttttatttttctttttcaattggatattgtttttatataagaaattatgaacaaaatatttag
152700
--------->
TOE1(3)
--------->
YAB1
----------->
RAV1(1)
--------->
TOE2(3)
------>
MYB83
---------
-----------
ARR10
<-----------
GT1
--------->
YAB1
-
-------->
GLK1(2)
--------->
WOX13(1)
<------
ZmHOX2a(1)
--------->
AHL20(2)
<-------
TEIL
---
-------->
ARR11(3)
--------->
MYB59
<---------
ALFIN1
------>
MYB46(1)
<-------
TEIL
---------
ARR11(3)
<-----------------
AG
--------->
ANAC46
--------->
WOX13(1)
<--------
aaaatcttaacgagaaaatcaatccaacttatatatacaaattaggaatacaaaacccctcactctataaataccaatccaacattcatggttcatctcc
152800
--------->
ICU4
<---------
ATHB51
<---------
ANAC58
--------->
AHL20(2)
<-------
GAMYB
------>
ZmHOX2a(1)
--------->
ANAC46
--------->
TOE2(3)
<-----------
RAV1(2)
>
At4g35610
<---------
AHL20(2)
----------->
RAV1(1)
--------->
ICU4
-------->
ANAC46
--------->
TOE1(3)
--------->
ANAC46
<---------
ANAC58
------
------>
AtLEC2
--------->
AHL20(2)
--------->
YAB1
<---------
ALFIN1
<---------
ATHB12
-
At4g35610
<---------
AHL20(1)
------------>
CBF
===================
RAV
<---------
ICU4
atacacaattgactaattaattccttaaaattatggagagcatcaatgacaaaactcagccacataccaggcgcttgcagagactaatgactagttccga
152900
-
<-
--
--
<---------
At4g35610
<--
--------->
At4g35610
<--
<-----------
RAV1(2)
<----
<-----------
HVH21
--------->
GLK1(1)
<------
MYB83
<---------
GLK1(1)
--------->
MYB59
<---------
MYB52(1)
-----
<---------
MYB46(3)
<---------
ZAT6
------>
ZmHOX2a(2)
--------->
MYB46(2)
<---------
ANAC58
------
<---------
MYB55(1)
<---------
ANAC58
<---------
<--------
P
---------->
TaMYB80
--------->
ARR11(3)
<---------
MYB52(1)
<---------
ARR14(2)
<---------
AGP1
---
<---------
bZIP60(2)
------>
ZmHOX2a(1)
<---------
KAN4(2)
<---------
ARR11(3)
----------->
HVH21
------>
ZmHOX2a(2)
--------->
ARR14(2)
<---------
CCA1(2)
<-
--->
LBD16
<----------
DOF2
<------
MYB46(1)
<---------
ANAC46
----------->
ARR10
--------
agaaactgacatggacgattttcttttgatcctcggtaggtcagatgaagtccctaagtttgcgaatatactagcgttagatttggatctcttcgtcata
153000
<----------
DOF2
<---------
YAB1
<---------
DEAR3(2)
-------->
TOE2(3)
--------->
ANAC46
--------
ICU4
<---------
ANAC58
<---------
GLK1(1)
------->
ATHB12
=================
bZIP_DOF
-
------->
YAB1
<---------
TGA1a
--------->
ARR14(2)
<
-------
ATHB12
--------->
bZIP60(1)
---------->
TaMYB80
<----
-------
YAB1
<---------
bZIP60(1)
<---------
LBD16
-------
-----
ICU4
<---------
ANAC58
--------->
CCA1(2)
<---------
ICU4
---->
YAB1
<---------
O2
<---------
ARR14(2)
<---------
YAB1
--->
ICU4
--------->
O2
<---------
ARR11(3)
--------->
ICU4
--
TGA1
--------->
TGA1a
--------->
ARR14(3)
--------->
ARR11(3)
------>
ICU4
--------->
SPL7
<---------
ARR14(3)
--------------->
AGL15
<
-------
HAHB4
<---------
ANAC58
--------->
ARR11(3)
------>
ZmHOX2a(1)
--------->
YAB1
->
YAB1
<---------
ANAC58
----------->
ARR10
------------>
CBF
----------->
TBP
----
atcattagagactaagtaggcttacgtcgcttcatgaagatattcggaatatcagacgatatcaacacaatccttctctaccctatatatcatgatgaga
153100
<
---
----
----
<-----
--------->
ANAC58
-------
<---------
YAB1
----------->
HVH21
-------
<---------
ICU4
<------
NtERF2
-------
--------->
ICU4
<-----------
TGA1
<------
--------->
GLK1(2)
--------->
bZIP60(1)
--------->
GLK1(2)
-------
<------
ZmHOX2a(1)
<---------
bZIP60(1)
--------->
ANAC46
<-------
-------->
HSFB2a(2)
<---------
ANAC58
--------->
ANAC58
--------
---------
HSFB2a(2)
--------->
ATHB12
--------->
ANAC58
<----------
-----
GLK1(2)
<---------
YAB1
--------->
ANAC58
--------->
REM1(1)
--------->
bZIP60(2)
---->
ARR10
<------
NtERF2
<-----------
HVH21
<-------
TEIL
<---------
CCA1(2)
---------
HSFC1(1)
<---------
LBD16
<---------
ANAC58
------->
TEIL
--------------------
----->
GLK1(2)
------->
TEIL
---------->
ID1
--------------->
AtSPL8
<-----------
GT1
<
ttctaggagatt
atgactcatgaacgcggctatgatttggcgtcacaagtactaaacatttgcaacgtacatcacaagaaactgttttgccatatcacgt
153200
<-----------
RAV1(1)
<---------
ANAC55(2)
--------->
ANAC55(2)
<---------
MYB52(1)
<---------
ANAC46
-----------
HVH21
<---------
ANAC55(2)
------>
DEAR3(2)
<---------
ANAC58
----->
SPL7
--------->
ANAC55(2)
--->
TEIL
<---------
ANAC58
----
SPL7
<---------
AtMYB61
--------->
bZIP60(1)
-
-->
ANAC58
<---------
bZIP60(1)
-
-->
ANAC46
<------
MYB83
<---------
MYB52(1)
---------->
DOF2
<--
-->
ANAC58
<------
MYB46(1)
<---------
MYB46(3)
<---------
ANAC58
<-----
---
ANAC55(2)
--------->
MYB52(1)
<---------
ICU4
-------
-->
ANAC55(2)
------------>
AtMYB77
--------->
YAB1
<---------
ANAC46
-------
--------
AtSPL3
<---------
DOF5.7(2)
----------->
GT1
--------->
ATHB12
<--------
------->
AtSPL3
--------->
DOF5.7(2)
---------->
DOF2
<---------
YAB1
<--------
-
HVH21
<--------
P
<---------
YAB1
--------->
ANAC58
<---------
At4g35610
<---------
GLK1(1)
--->
TaNAC69(2)
----------->
HVH21
--------->
ANAC58
--------->
At4g35610
--------->
GLK1(1)
-----------
TGA1
----------->
TGA1
<-----------
TGA1
<-----------
GT1
<---------
ANAC58
---------
accgtcacttgttggtcttgtcgagtgacgataacggttgcgtcatactcaagaaagttataacaatagctgatgatttcttgaaagatgaattccttga
153300
------->
PIF4
------->
MYC3
<-------
MYC4
<-------
MYC3
<-------
MYC2
------->
MYC2
<-------
PIF4
------->
PIF5
--------->
ANAC58
--------->
HSFC1(2)
<---------
ZAT2
<---------
HSFB2a(1)
--------->
ANAC46
--------->
HSFB2a(1)
<---------
ANAC58
----->
MYB46(1)
<---------
HSFC1(2)
<---------
ANAC58
----->
MYB83
--------->
ANAC58
<---------
GLK1(2)
<-------
PIF5
-------
MYB59
--------->
ANAC58
------->
MYC4
----
WRKY18(1)
--------->
ANAC58
<------
ZmHOX2a(1)
--------->
ANAC55(2)
---------
---->
HVH21
<---------
ZAT18
--------->
ANAC46
<---------
ANAC55(2)
---------
-->
WRKY12
<---------
ALFIN1
--------->
ANAC58
------------>
OsbHLH66
---------
-
ANAC58
--------->
ZAT14
--------->
ANAC58
<---------
ALFIN1
-----------
-
ANAC58
--------->
ZAT2
--------->
ANAC58
<------------
OsbHLH66
--------->
AtMYB61
------------>
WRI1
--------->
ANAC58
<---------
TOE2(3)
<---------
ZAT2
---------->
DOF2
<-
cctaatcgcacagcacgctcactcgctaagcatgcacgacttaggaatctccctaatccagcacgtgcttgagcttgattttacaaagaaaaccacacaa
153400
------->
PIF5
<-------
MYC3
---------->
DOF2
--------->
MYB52(1)
--------->
At4g35610
>
ANAC58
------->
MYC2
<---------
At4g35610
>
ANAC46
<-------
MYC2
------->
GAMYB
>
ANAC58
------->
MYC3
<---------
ETT(2)
<---------
YAB1
<---------
ANAC58
>
RAV1(1)
<----------
DOF2
--------->
ETT(2)
--------->
ARR11(3)
<---------
ANAC58
<
---------
ID1
<-------
PIF5
<---------
TOE2(3)
--------->
MYB52(1)
--------->
At4g35610
<-
gacgacaagcgcttgcacgagctaatggctgagtttgatgaggttctctcgacatcagtaacagcagatgttgataagctccataagcttgcctcgaagc
153500
<---------
ARR14(2)
--------->
ARR14(2)
--------->
GLK1(2)
--------->
GLK1(1)
<---------
GLK1(1)
<---------
HSFB2a(1)
<---------
TOE2(2)
<---------
TOE1(2)
------>
ZmHOX2a(1)
--------->
GLK1(1)
--------------------->
WRI1
--------->
GLK1(2)
--------->
ATHB12
<------
ZmHOX2a(1)
<---------
GLK1(2)
<---------
YAB1
--------->
TOE2(2)
---------
ZAT6
------>
ZmHOX2a(2)
--------->
YAB1
--------->
ICU4
--------->
TOE1(2)
<---------
ETT(2)
--------
TOE2(3)
<----------
DOF2
--------->
YAB1
<---------
YAB1
--------->
LBD16
<----
taatgttagattctgatctctttttcgagtttgtcataacaagacgaggctcgctcatgattcaaattatcctaggaaaatccgaagaagtcgaccaagt
153600
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AGI:
At1g01410.1
Description:
APUM22 (ARABIDOPSIS PUMILIO 22); RNA binding / binding. similar to binding [Arabidopsis thaliana] (TAIR:AT5G64490.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67257.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Pumilio RNA-binding region; (InterPro:IPR001313); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989)
Range:
from: 153113
to: 154198
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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