Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------ANAC58              <-----------GT1              <---------AHL20(2)           --------->MYB52(2)       <------MYB46(1)                                                  ----------->TGA1       <------MYB83 <---------TOE2(3)                                   ----------->HVH21  <---------YAB1<---------ANAC58                               <-------TEIL -------------->AGL15                <-----------RAV1(1)   <---------ARR11(3) ---------------AGL15       <----------DOF2                --------->AHL20(1) ----------------AGL3       <---------DAG2                 --------->ARR11(3) ----------------AGL2  ---------->DOF2                    <---------AHL20(2)      --------->MYB52(2)< ->GT1 ----------->GT1<------ZmHOX2a(1)             <---------ANAC46  <---------At4g35610         <--   aactatatttggttatttacttgaggaaagctttttgttttgttgtactcactggcctatatatattcattcggatgacgacgatagttgtttcaaactg  138100                                                                                                  <--                                                                                                  ---            <---------AHL20(2)                                <---------ATHB12                  -----            --------->AHL20(2)                         ------>ZmHOX2a(1)                      -------       <---------AHL20(2)                              <XXXXXXXXXXXXXXXXXXXXMIR867            -------      --------->AHL20(2)                         <---------At4g35610                          <------   <----------DOF2               --------->YAB1  --------->At4g35610       --------->YAB1     <------ -----------GT1      ----------->GT1           <---------WRKY12--------->YAB1                -------- -------WOX13(1)  --------->MYB52(1)           <---------WRKY38(1) <-----------TGA1          <-------   attaacttttaaatttaaacaaactgaaaattgaatcagagttttggagtcaacttcctagtaaatcatcgtcagaataatagtcgtcaaactcgatatc  138200 -------YAB1 --->ZmHOX2a(1)                                                                       ------>MYB46(1) ------>RAV1(2)                                                                       ------>MYB83 -->ARR11(3)                       <------------CBF                     ---------->DOF2      <------- -->ARR14(2)                   ----------------->AGL1               --------->DAG2  <---------MYB46(2) ---ARR14(2)                  ----------------->AGL1          --------->ANAC46  ------>ZmHOX2a(1) ---ARR11(3)                  <-----------------AGL1          --------->ANAC58 <---------ANAC58 ->GLK1(1)                 <---------ANAC58                   --------->ANAC58 <---------ANAC58 --GLK1(1)  <---------YAB1 <---------ANAC58      <---------MYB46(3)---------->DOF2  <---------MYB59   ctgattcacatattttgatatagaaatttgcttcccaaattgaaaacgcggtcgtttaataaacaggccaaaagtaaagttccttaccaaactttttaat  138300          --------->ZAT18          <---------ZAT18          --------->ZAT14          <---------ZAT14                                                 --------->At5g28300          --------->SPL7                                                 ----------->GT1        ------->PIF5                                               --------->ANAC46        <-------PIF5  <---------ZAT6                           --------->AtMYB61      ------------>OsbHLH66             --------->GLK1(2)   --------->ANAC58     <------------OsbHLH66      <---------WRKY45            --------->ANAC46    --------->TCP20 <-------TEIL<---------WRKY38(1)    <-----------GT1--------->MYB52(1)    <---------PCF2 --------->CCA1(2)    <---------ARR14(2)  <---------ALFIN1                    <----    --------->PCF5--------->ARR11(3)    <-----------ARR10   --------->ANAC58                  ------- --AHL20(2)     ----------->ARR10       --------->ARR14(2)--------->AtMYB61                   <------   ctaatgggcccgtgcgctaagatacagttaatgggcaacgcgaatcggcccataaataaaccacaccacaagtagcggtaacaaggtagttctatggggt  138400                     --------->ATHB51                                                  --------->HSFB2a(2)                     <---------AHL20(2)         --------->KAN4(2)                      <---------HSFB2a(2)                     --------->AHL20(2)        --------->KAN4(1)                   ------>ZmHOX2a(2)               --------->ANAC55(2)             <---------HSFC1(2)                 <------ZmHOX2a(2)       --------->At4g35610                     <---------KAN4(1)                 --------->ARR14(2)       <---------At4g35610 ---------->ID1      <---------HSFB2a(1)               <---------ARR11(3)   --------->ANAC58  <---------ICU4            --------->HSFB2a(1)               <---------ARR14(2)   --------->ANAC58  --------->ATHB12         <---------KAN4(2)            <----------DOF2--------->ARR11(3)   --------->ANAC46 <---------YAB1            <---------TOE1(2) <-----------GT1  --------->ARR11(3) ----P------->TEIL  --------->ICU4    <-------TEIL         <----------DOF2 <---------GLK1(1) ---->GT1      <---------ANAC55(2) <---------HSFB2a(1) <---------CCA1(2)  <---------ANAC58<---------GLK1(2) ---ANAC46     ----------->GT1------>ZmHOX2a(1)--------->HSFC1(2)         <---------ANAC58<---------ARR11(3)   agaaaacgcatctgaacaggtaattatttgtcctacaaggttcgatcgaatgttctcatctctttttttctctctggctttccgatcttctagattttcc  138500                                                                            <---------MYB46(3)                                                                           <-----------RAV1(2)                                                                         <-----------HVH21                                                                        --------->TGA1a                                             <---------ANAC58         --------->ANAC58                                         <---------AtMYB61            --------->ANAC58                                    <---------MYB46(3)                --------->ANAC55(2)                                   --------->ALFIN1                   --------->ANAC46                                 --------->ALFIN1                ----------->HVH21<---------PCF2                                 <-----------RAV1(1)       <---------TOE2(3)--------->MYB55(2)   <---              <------ZmHOX2a(1)<---------ANAC58          ----------------------->TaNAC69(2)      <---        --------->ATHB12       <---------ANAC58    ---------->DOF2    <---------ANAC55(2)     -------        --------->YAB1         <---------ANAC46    ===============================bZIP_DOF    -------       --------->ICU4     <-----------RAV1(1)<---------ANAC58   --------->At5g28300       <----------      <---------WOX13(1)  --------->ALFIN1  --------->ALFIN1   ----------->GT1 --------->ALFIN1<-----   aagtcttgaatgatgaggaaggcgaaggctgtggcctgtgggtgaggtcgtgccaaagtctaaggctgtaacacgcgtctggtgggacatcaacaggtgt  138600        ----------->TGA1        ----------->HVH21      --------->At4g35610      ----------->RAV1(2)      --------->ZAT2      <---------At4g35610            --------->REM1(2)     ------>NtERF2                 --------->LBD16     --------->LBD16              <---------ANAC58    <---------ANAC46              <---------ANAC55(1)    <---------RAP2.6(2)           <---------ANAC46                                           <-------   <---------LBD16                <---------ANAC58                                           <-------GAMYB <---------ARR14(2)           <------MYB46(1)                                                ======== --------->ARR14(2)           <---------DEAR3(2)                                            <-------- --------------AGL1          --------->MYB59                                                <-------- ------LBD16            <---------TOE1(2)                                           <-----------HVH21 ---->HVH21<---------bZIP60(2)<------MYB83                                         --------->AtMYB61 -->ALFIN1 <---------ANAC46  <---------DEAR3(1)                              <---------At4g35610 -RAV1(2) <---------TOE2(3)  <---------MYB46(3)               --------->MYB59--------->At4g35610 ----SPL7<---------TGA2(2) <-----------HVH21      <----------DOF2            ------>ZmHOX2a(1)<------   ccggttccggctgacgttgatgttcgcagggtcggtccgtgtataaaacgggctttggagaaattaggctactctggtcctctcaccatcactgccgttg  138700          <---------O2          --------->TGA1a       =============MYC_MYB      --------->MYB46(3)                                                         <---------ARR11(3)    --------->MYB52(1)                           <---------GLK1(2)               --------->ARR11(3) --SPL7------->GAMYB                          <---------HSFB2a(2)               <---------CCA1(2) ===================MYC_MYB                   --------->HSFB2a(2)      --------->MYB52(1) -ANAC46  --------->O2     ------>ZmHOX2a(1) <---------LBD16          <---------ALFIN1 -MYB46(3)<---------TGA1a --------->TOE2(3) ------>ZmHOX2a(1)   <---------ANAC55(2)          ------>ZmHOX2a(1) ---MYB52(1)     <---------ICU4      <-------TEIL--------->ARR14(2)  --------->MYB46(3)     ---------   ggatactaacagacgtccctcatgacttcctcagacaagtccattcctctggaatcgctcttcatcacgttcccaccggtttatatcttctcatccttca  138800                                                                                                 <---                                                                                                <----                                                                                               <-----                                                                                            <--------                                                                                           <---------ANAC46                                                                                        --------->ALFIN1                                                                                      <---------ANAC58                  <---------ANAC58                                                    <---------ANAC58                  <---------ANAC58                                    --------->At4g35610<---------DEAR3(1)          <---------TOE2(3)    <---------DAG2                   --------->LBD16       <---------ANAC46  --------------->AGL15        <----------DOF2                 --------->HSFB2a(2)   <---------MYB46(3)  <---------------AGL15   <-----------GT1                      --------->ANAC46      --------->MYB55(2) >TOE2(3) <---------TOE1(3) ---------->ID1           <---------YAB1   <---------At4g35610--------->ZAT18   ttttctaaaattagggttttgcttctatttgccctttttgtttttgtttttaagtcttatagtttccgaaacagctctctcagggattgggtgggctgtg  138900                                                         --------->ARR11(3)                                                         <---------ARR11(1)                                                         <-----------ARR10                                                         <---------ARR11(3)                                                 <---------TOE1(2)                                                 --------->SPL7                                               <---------SPL7                                               --------->TOE1(2)                          --------->ARR14(2)                                  <---------AHL20(2)     --------->ARR14(2)               <---------ARR14(2)      --------->ARR14(2)         <---------AHL20(2)      <---------ARR14(2)              <------ZmHOX2a(1)      <---------ARR14(2)  ------>NtERF2        --------->TOE2(2)                        <------MYB83      ------->TEIL      <---------LBD16       <---------ANAC58                          <------MYB46(1)    <---------ZAT18   ------->GAMYB           <---------ANAC58   <---------WRKY18(1)  <--------P    -    --------->ZAT18   --------->AtMYB61      <---------------AtSPL3                 <------MYB83----- <---------ANAC46    --------->MYB46(3)      --------------->AtSPL3 <---------ALFIN1<---------STY1(2) ----GAMYB          -------->P   --------->AHL20(2)     --------->GLK1(1)      --------->ANAC58<----- -----MYB46(3)      ------->TEIL <---------AHL20(1)     <---------ARR14(1)     --------->ANAC58------ ----AtMYB61   --------->YAB1    --------->AHL20(1)     <---------CCA1(2) ----------->HVH21 ------>ZmHOX2a(2) -DEAR3(1)----------->GT1 --------->LBD16  <---------CCA1(2)    ----------->HVH21   <------MYB46(1) <   gttaagtggacctggtataatcaacctccggctaatttaatgctcatatcgtacgagcatatctacttgaccactcttgacatgctaggtaggatcggat  139000  Previous    Next  AGI:  At1g01350.1    Description:  nucleic acid binding. similar to zinc finger (CCCH-type/C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G06420.1); similar to zinc finger (CCCH-type/C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G06420.2); similar to Os02g0301000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64331.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 136124    to: 138162    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g01355.1    Description:  nucleic acid binding / zinc ion binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40196.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Protein of unknown function DUF537 (InterPro:IPR007491) Range:  from: 138513    to: 139568    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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