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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                       --------->ANAC58            -
                                                                       --------->ANAC46            <
                                                                   --------->ANAC58             <---
                                                                   --------->ANAC58         --------
                                                                 --------->AtMYB61  <---------AHL20(1)
                                                                 ------->GAMYB    <---------AHL20(1)
                                                                --------->MYB46(3)<---------ARR11(3)
                                                               -------->P         --------->AHL20(1)
                                                           --------->ANAC58       --------->ARR11(3)
                                                           --------->ANAC58    --------->AHL20(2) <-
                   --------->ETT(2)                        --------->ANAC46   --------->YAB1<-------
                   <---------ETT(2)                      ---------->DOF2     --------->AHL20(2) ----
         <---------ANAC58         ----------->GT1    ------->GAMYB --------->ANAC46 --------->ARR11(3)
         <---------ANAC58      ----------->GT1    --------->WOX13(1)   --------->ANAC58     <-------
         <---------ANAC46 --------->YAB1        <------ZmHOX2a(2)----------->RAV1(1)--------->AHL20(1)
 
agtaagacagtgccttgcgctatcgacaatgggaatgtagaaaaacaatggatcaatcgccaaagcaaccacacaagcaaataaaaatattttgttccag  134900
          --------->GLK1(2)
          --------->ARR14(2)
          ------->TEIL
          <---------ARR14(2)                                                     ----------->GT1
--------->LBD16                                                    --------->ARR14(2)
-------->HSFB2a(2)                                                 <---------ARR14(2)
---------HSFB2a(2)       --------->YAB1                            --------->ARR11(3)
------ARR14(2)          <---------YAB1            <---------HSFC1(2) ------>ZmHOX2a(2)
--------->AGL1   --------->LBD16                  --------->HSFC1(2)<------ZmHOX2a(2)
--------LBD16--------->TOE2(2)                  <---------ARR11(3) <---------ARR11(3)
----------AGL1  <---------ANAC46          --------->ZAT6          <------ZmHOX2a(1)
----->ARR14(2) <---------LBD16      --------->LBD16    <---------ANAC58     ----------->HVH21 <-----
----------AGL2------>ZmHOX2a(1)    <---------ANAC46    <---------ANAC58------>ZmHOX2a(1)      <-----
 
ttctggagaaacgaatcctgcgggtttatgatgttcttccgagtaacactagatgtttccttgtggtcaggatccttatgtgaagggaaactcaatggct  135000
                                                        --------->TOE2(3)<------ZmHOX2a(1)
                                                        <---------HSFB2a(2)
                                                <----------DOF2       <---------At4g35610
  --------->ARR14(2)                     <---------ARR11(3)   --------->YAB1             --------->REM1(1)
----ANAC58                               --------->ARR11(3)   --------->TOE2(3)  <---------ANAC58
----ANAC58  <-----------GT1       ---------->DOF2       --------->HSFB2a(2)      <---------ANAC58 --
 
tcttgaatccccattttacattcttgaaaactctatctaaagaaggtctagcttttcttccataaccatattcagaggataatggtttgccttcatcttt  135100
                                                                                 ------>MYB83
                                                                                 ------>MYB46(1)
                                                                               --------->AtMYB61
                                                                               <---------MYB59
                                                                               <---------MYB46(2)
                                                                               <---------MYB111(2)
                                                                               --------->MYB46(3)
                                                                               <---------MYB111(1)
                                                                             -------->P
                                                                           --------->MYB46(3)
                                                                           <---------MYB111(1)
                                                                           <---------MYB46(2)
                                                                           <---------MYB111(2)
                                                                           <---------MYB52(2)
                                                                      <---------HSFB2a(2)
                                                                      --------->HSFB2a(2)
                                                                <---------ARR11(3)              <---
         <---------ARR11(3)                                     --------->ARR14(2)              ----
--------->TOE2(3)                                               --------->ARR11(3)             <----
<---------MYB59                         --------->WOX13(1)      <---------GLK1(2)-------->P  -------
--------->TOE1(3)                     <---------ATHB12          --------->ARR14(3) --------->TOE1(3)
----->TEIL --------->YAB1  ----------->GT1                      <---------ARR14(3) --------->TOE2(3)
 
gaacctaaacaaaatcataagaaaatgagatagtagaaaaaatcattcaactatgaactgttttcaagattttctgtaactaccaaccttacacgattat  135200
                                                                         --------->AHL20(1)
                                                                         <---------AHL20(2)
                                                                      --------->TOE2(3)
                                                                     --------->YAB1
                                                                  ------>ZmHOX2a(1)
                                                           <---------bZIP60(2)
                                                        ----------->HVH21--------->AHL20(2)
                                                <----------DOF2  <---------MYB59
                                          ===========================bZIP_DOF
                                          <----------DOF2  <---------TGA1a<---------YAB1
                                         ================================HOX2a_HOX2a
                          <---------CCA1(2)     =====================bZIP_DOF
------ICU4        <---------ALFIN1       ------>ZmHOX2a(2) <---------O2<---------YAB1
----->YAB1    --------->At4g35610      --------->ARR11(3)  <---------ANAC58   --------->YAB1
-----YAB1  <---------At4g35610         <---------ARR11(3)  <---------ANAC58--------->YAB1
-->YAB1    --------->At4g35610     <---------At4g35610  ----------->TGA1--------->YAB1           ---
 
catggctaaatgccatcagccaaacccttgtatatttcaactgatctttcgcttacagggtgacgagtcctaacattataataagaaccaaaacttaaga  135300
                           <---------YAB1
                           --------->ICU4                             ------>MYB83
                       <-------TEIL                                   --------->MYB52(1)
                       ------------>CBF                               ------>MYB46(1)
                     *TSS  <---------ATHB12                         <---------MYB111(2)
                    <---------ANAC58                                <---------MYB46(2)
                    <---------ANAC55(2)                             <---------MYB111(1)
                    <---------ANAC55(1)                             <---------MYB59
                    <---------ANAC46                   --------->ANAC58          <---------YAB1
                    --------->ANAC55(2)                --------->ANAC58         ------------>CBF
                    <---------ANAC58           --------->AHL20(2)  --------->ANAC58              ---
                   <---------------AtSPL8      --------->YAB1      --------->ANAC58         <-------
                   --------------->AtSPL3     <---------ATHB12     --------->ANAC46<------------CBF
               <---------ICU4               --------->WOX13(1)     --------->ANAC55(1)      <-------
               --------->ATHB12     ------------>CBF   --------->ANAC46    ----------->TBP  <-------
              <---------YAB1        --------->LBD16--------->YAB1  <---------ANAC55(2)    <---------ANAC46
------>TOE1(2)--------->ICU4--------->YAB1------------>CBF         --------->ANAC55(2) <-----------RAV1(1)
 
catacgaattcttctacatgattacgtacaatgataatccccaataccaattaaaaataagcaagtagacacctaactacaaatacaattgtgttgtgtg  135400
                                                                               ----------------->AGL1
                                                                   --------->ZAT6
                                                                 ------>MYB83<-----------GT1
                                                                 ------>MYB46(1)
                                                               <---------MYB111(2)               ---
                    ================================================================================
                    <---------------AGL15                      <---------MYB46(2)      ------>ZmHOX2a(1)
                    --------------->AGL15                      <---------MYB55(2)  --------->ARR14(2)
                   <---------ANAC58                            <---------MYB52(2)  <---------ARR14(2)
      --------->AHL20(2)                                       <---------MYB111(1)------>MYB83   ---
      <---------AHL20(2)   ----------->GT1                     <---------MYB59 ----------------->AG
---->TEIL          <---------ANAC58               --------->WOX13(1)--------->TOE2(3)  ----------->GT1
--ANAC58        <----------DOF2                --------->GLK1(2)--------->MYB55(1)------>MYB46(1)---
--ANAC46  <---------AHL20(2)              --------->TOE1(2)    --------->AtMYB61<---------MYB59 ----
--ANAC58  <---------ICU4  --------->DAG2--------->GLK1(2)     --------->ANAC46 =====================
 
tatgtgtttttaaatatttctttcttgaaaaggttaattagagaacctagaatcagtcaatttccacctaacattagattataccaaatcctgtaattcc  135500
                            --------->ANAC58
                            --------->ANAC58
              <---------AHL20(2)
      ------>ZmHOX2a(1) --------->AtMYB61                       <---------GLK1(1)                 --
--->MYB83  --------------->AGL15                                --------->GLK1(1)               ----
============================MADS_MADS                        --------->ANAC58                   ----
--->MYB46(1) --------->AHL20(2)                              --------->ANAC58                   ----
----->P   <-----------------AGL3                           --------->CCA1(2)           <---------WRKY18(1)
-->ZmHOX2a(1)<---------ATHB12                            --------->YAB1<<<<<<<<<CBP60g--------->WRKY38(1)
===========================MADS_MADS                  ---------->DOF2  <<<<<<<<<SARD1 --------->WRKY12
 
tacccattcctgctcaataaatggaaaccacacgaacaacttaaaaacactgttcatcaaagataagaaatccaaatttcaaaaaaccattgaccataaa  135600
                                                          <----------ID1
                                                       ---------->DOF2
                                                   --------->ANAC58
                                          <---------AHL20(2)
        <---------ARR11(3)                --------->AHL20(2)                    --------->YAB1
       <---------CCA1(2)                  <---------AHL20(1)           --------->GLK1(1)
-------->DOF2                             --------->AHL20(1)           <---------GLK1(1)
----->ANAC58                      ----------->GT1  --------->ANAC58--------->ANAC58               <-
----->ANAC46           --------->ARR14(2)--------->AHL20(2)        --------->ANAC58        ---------
----->ANAC58           <---------ARR14(2)<---------AHL20(2)      --------->MYB52(1)  --------->GLK1(2)
 
cgaaagacatatatctaagcgtttcggttctgagaaacagcaaaataaattcagacgaaaaagaacaaaaacggaaatcggaatcaaaattctatcatca  135700
                                                              --------->MYB52(1)
                                                              <---------DOF5.7(2)
                                                             --------->ZAT14
                                                  --------->ANAC58
                   <---------DOF5.7(2)            --------->ANAC58
                   --------->MYB52(1)    <---------At4g35610 <---------WRKY12
                  ----------->HVH21   <-------TEIL--------->ANAC46   <XXXXXXXXXXXXXXXXXXXXMIR159C
                <------MYB83         --------->CCA1(2)       <---------ZAT14                      --
                <---------ANAC55(2)  --------->ARR14(1)      <---------WRKY38(1)                  <-
               --------->MYB46(2)    --------->GLK1(2)      ----------->HVH21                     <-
   --------->TOE1(3)                --------->ARR11(1)    <---------DEAR3(2)                    <---
   --------->TOE2(3)                <---------GLK1(2)     <------MYB46(1)                   --------
  ----------->RAV1(2) ------->GAMYB <---------ARR14(2)    <------MYB83                     <--------
 -------->P    --------->MYB111(1)  --------->ARR14(2)   <---------DREB2C(2)       --------->ANAC58
--------MYB52(2)<------MYB46(1)   ----------->ARR10      <---------DEAR3(1)        --------->ANAC46
>YAB1          --------->MYB59----------->GT1   --------->MYB52(1) <---------ANAC46--------->ANAC58<
 
aactaacctgaaacgaagtaggtaacggcgagatagtaagattcggctaataaacggaagtcggtgaacggcgttttcttcaattcaagcaactggtccc  135800
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AGI:  At1g01340.1   
Description:  ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10); calmodulin binding / cyclic nucleotide binding / ion channel. Identical to Probable cyclic nucleotide-gated ion channel 10 (CNGC10) [Arabidopsis Thaliana] (GB:Q9LNJ0;GB:Q9LKL3); similar to ATCNGC13 (cyclic nucleotide gated channel 13), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT4G01010.1); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) [Arabidopsis thaliana] (TAIR:AT2G46430.2); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46430.1); simi
Range:  from: 132328    to: 135322    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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