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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ANAC46
--------------->
AGL15
----------------->
AGL3
--------->
ANAC58
--------->
ANAC58
--------->
YAB1
--------->
At4g35610
<--------
HAHB4
<---------
At4g35610
--------->
LBD16
<---------
ICU4
---------->
DOF2
--------->
MYB52(2)
<---------
LBD16
--------->
ATHB51
<--------
P
<--------
P
<---------
ALFIN1
--------->
YAB1
----------->
RAV1(2)
--------->
TOE2(3)
<---------
ZAT2
=============================
----->
GAMYB
--------->
AtMYB61
--------->
TOE1(3)
--------->
ZAT2
---------->
DOF2
------->
DEAR3(1)
<---------
TOE1(2)
--------->
MYB46(3)
<---------
TOE2(3)
------>
DEAR3(2)
------->
TEIL
<-----------
HVH21
<---------
ARR14(2)
--------->
AHL20(2)
------>
MYB46(3)
--------------------->
WRI1
<---------
MYB52(1)
--------->
ARR14(2)
--------->
ICU4
accgcctggttagaccaaagctcagagaacgtatcgaacgttagaccggttagctgaaccagcacggttccggttaaaggaagaataattaagaagaaga
58800
<----------
DOF2
--------->
At4g35610
<---------
At4g35610
------->
TEIL
--------->
MYB46(3)
--------->
ARR14(2)
<---------
TGA1a
<---------
ARR14(2)
<---------
ARR14(2)
<---------
bZIP60(2)
--------->
ANAC55(2)
--------->
ARR14(2)
--------->
TGA1a
--------->
ANAC58
<---------
AHL20(2)
----
--------->
O2
--------->
ANAC55(1)
<---------
ICU4
-----
<---------
O2
--------->
ANAC58
------->
TEIL
------
<-----------
HVH21
<---------
ANAC55(2)
----------->
GT1
-------
<---------
MYB46(3)
--------->
ZAT14
--------->
ANAC46
------->
GAMYB
<---------
LBD16
<------
==================
bZIP_DOF
<-----------
HVH21
--------->
MYB52(1)
--------->
LBD16
<---------
YAB1
gaatggtggtcacgttgcaagagttgtgaagtccaagcttcacgtatttgagcttaacggacgttaataaatccggcaaacgtcttcgaattcttataac
58900
<---------
MYB52(1)
--------->
At5g28300
<---------
YAB1
------>
NtERF2
--------->
YAB1
--------->
LBD16
<---------
ATHB12
--------->
ANAC46
--------->
ICU4
--------->
DEAR3(1)
<---------
At4g35610
<---------
LBD16
--->
GAMYB
--------->
ANAC58
---->
MYB46(3)
--------->
ANAC58
<---------
ZAT14
--->
RAP2.6(3)
--------->
ANAC46
<xxxxxxxxxxxxxxx
smallRNA(si3)
-->
MYB52(1)
<---------
HSFB2a(2)
<-------
GAMYB
<---------
MYB52(1)
--------->
ZAT14
-----
GT1
------->
TEIL
--------->
ARR14(2)
<------
ZmHOX2a(2)
<---------
MYB46(3)
----------
ggccgatgatgaatctcgaaacgccatctccgccgttaatctctctcgatccatctcaatgctgtttgttctctccat
cagtatagttttgggtcgaaat
59000
--------->
ANAC58
--------->
ANAC58
<---------
TOE2(3)
------
--------->
WOX13(1)
<----------
DOF2
<------
--------->
ANAC58
--------->
ARR11(3)
<------
----------->
GT1
<------
ZmHOX2a(1)
<---------
ARR11(3)
---------->
DOF2
--------->
GLK1(1)
--------->
ANAC58
----------->
GT1
<---------
ARR14(2)
--------->
YAB1
<-----
->
GT1
--------->
TOE2(3)
--------->
AHL20(2)
--------->
ARR14(2)
----------->
GT1
<---------
GLK1(1)
atttcaaacgtaaatcaaggaaggattgaagataaaatgtaaaatctttaggcaaatttggagaaatagaaagagagagaaaatgagaatgggaattcta
59100
--------->
AHL20(1)
<---------
AHL20(1)
--------->
AHL20(2)
--------->
ARR11(3)
<---------
ARR11(3)
*
TSS
<---------
AHL20(1)
<------
ZmHOX2a(1)
---------->
DOF2
-------
<------
ZmHOX2a(1)
--------->
ANAC58
-------
----------->
GT1
--------->
ANAC58
<---------
AHL20(2)
--------->
AGL15
----------->
GT1
--------->
ZAT18
--------->
AHL20(1)
----
-----------
AGL2
--------->
ARR11(3)
--------->
CCA1(2)
--------->
AHL20(2)
<-------
-----------
AGL3
--------->
ARR14(2)
<---------
ARR11(3)
----------->
GT1
--------->
YAB1
----------
AGL15
<---------
ARR14(2)
--------->
ARR11(3)
----------->
GT1
--------->
ICU4
<
aaattggtgaattaggaggattttggtgaaatgagggcaagtagggatggagagatatatagagtgc
aagaaagataaaaatattttaaagattaataat
59200
<---------
ARR14(2)
--------->
ARR14(2)
<---------
MYB46(3)
<------
MYB46(1)
--------->
MYB55(2)
<------
MYB83
--------->
ALFIN1
<---------
DEAR3(1)
<---------
AtMYB61
<---------
ANAC58
<---------
ANAC58
--------->
MYB55(2)
<---------
ICU4
--------->
ATHB12
--------->
YAB1
-------->
HAHB4
<---------
YAB1
--------->
ICU4
--------->
ICU4
<---------
ATHB12
->
HAHB4
<---------
AHL20(2)
-->
YAB1
--------->
AHL20(2)
<---------
MYB46(3)
<---------
YAB1
----->
YAB1
--------->
YAB1
<---------
TOE2(3)
--------->
ZAT6
--
YAB1
----------->
GT1
--------->
AHL20(2)
<---------
ARR11(3)
<-----
---------
ICU4
---------->
DOF2
<---------
AHL20(2)
--------->
LBD16
--------->
At4g35610
agtaatgacttaacaaaaaaaaaaaaaagatggaataatattcgaatttaatgatgggtggttccgagataatactattagctcaactacttatatggga
59300
<---------
GLK1(2)
------->
TEIL
<---------
At4g35610
--------->
ANAC58
<---------
GLK1(2)
--------->
AHL20(1)
--------->
ANAC58
<---------
ZAT2
<---------
AHL20(1)
--------->
ANAC55(1)
--------->
At4g35610
<---------
AHL20(2)
--------->
ANAC58
--------->
ZAT2
--------->
AHL20(2)
--------->
ANAC58
<---------
At4g35610
--------->
AHL20(2)
<---------
YAB1
<---------
ZAT18
------>
MYB46(1)
----
PCF2
--------->
AHL20(2)
<-----------
GT1
--------->
ANAC46
---------->
DOF2
------>
MYB83
ccttgatattaaattaagtagtcagattatttttcatgttttgttcacacgaaatgcaagttacaaaagtctaacaaaacctagctgaatctcataagtc
59400
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
------>
MYB83
--------->
YAB1
<-----------
GT1
------>
MYB46(1)
<------
ZmHOX2a(2)
<---------
MYB59
<---------
ARR11(3)
--------->
TOE2(3)
--------->
ARR11(3)
<----------
DOF2
<-----------
GT1
<--------
P
<------
MYB46(1)
--------->
YAB1
<---------
REM1(1)
----------->
GT1
<------
MYB83
<---------
AHL20(2)
<---------
ANAC46
atatggtagatcataaatttggtttatcttttttttcacacatatatttgggcatcataacattctattttggtgtaacctaattttttttttttttgaa
59500
<---------
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
------>
ZmHOX2a(1)
----------->
RAV1(1)
--------->
TOE2(3)
<-----------
GT1
<---------
AHL20(2)
--------->
YAB1
<---------
AHL20(1)
<---------
ICU4
----------->
RAV1(1)
--------->
AHL20(1)
<---------
TOE2(3)
----------->
RAV1(1)
--------->
ZAT6
----------->
HVH21
<-----------
GT1
--------->
TOE2(3)
<---------
YAB1
----------->
GT1
--------->
REM1(1)
<---------
MYB46(3)
--------->
YAB1
gtttttgataaacaacataacttgttaattataccactacaacacaacaaaatatgacatgtttgttatatatttccttataattaaacttaaacgtttt
59600
-
<---------
AHL20(2)
--
--------->
AHL20(2)
<-
--------->
ANAC58
<-
--------->
ANAC58
<---
----------->
GT1
--------->
AHL20(2)
<-
<------
MYB83
<---------
ANAC58
--------->
AHL20(2)
--------->
YAB1
<---------
YAB1
<------
MYB46(1)
<---------
ANAC58
<---------
AHL20(2)
<---------
YAB1
<
<-------
TEIL
------->
TEIL
<---------
ANAC46
--------->
AHL20(2)
--------->
AHL20(2)
agacatccatgatgtttttattagcaagtgtatgtaggttatccaaaattgagtgagggcaagttataaaattatatatcaattgaatattataagcagg
59700
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AGI:
At1g01120.1
Description:
KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase. Identical to 3-ketoacyl-CoA synthase 1 (KCS1) [Arabidopsis Thaliana] (GB:Q9MAM3;GB:Q56YX9;GB:Q9ZTK3); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT2G26640.1); similar to fatty acid elongase 3-ketoacyl-CoA synthase [Brassica napus] (GB:AAT65207.1); similar to 3-ketoacyl-CoA synthase 10 [Gossypium hirsutum] (GB:ABX10440.1); similar to fatty acid elongase 3-ketoacyl-CoA synthase [Brassica napus] (GB:AAT65206.1); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392); contains InterPro domain Thiolase-like; (InterPro:IPR016039); co
Range:
from: 57269
to: 59167
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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