Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------MYB59                                                                  --------->ANAC46                                                                <-----------GT1                                                              <----------DOF2                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                                            <---------RVE1(1)                                                           <---------ARR14(2) <----------DOF2                                           --------->ARR14(2) --------At4g35610                                         --------->ARR11(3) ------->At4g35610                                         <---------ARR11(3) ------->ZAT2                                              --------->ARR14(3)                    ---- ---->ZAT2                                                 <---------ARR14(3)                 <------ -----ZAT2                          ------->GAMYB         --------->RVE1(1)                  <-------TEIL ---->At4g35610                     ----------->RAV1(1)---------->DOF2                      --------- -----At4g35610           <---------At4g35610       --------->ANAC58                       <---------ARR14(2) --->ANAC46   <------NtERF2        --------->ANAC46 --------->ANAC58                       --------->ARR14(2)   cagctttcaccaaggtcgcgattttgtcagcctatcaacgacataaacaaacacaagtaaagatctttacccaattcaaaacacatttagacagatacat  50700                                                --------->ANAC58                                                --------->ANAC58                                                --------->ANAC46                                              <-----------GT1                                              --------->ZAT6                                      --------->ARR14(2)          --------->ZAT6                           --------->ZAT6--------->TOE1(3)        <-----------GT1                           <-----------GT1------>ZmHOX2a(1) <--------HAHB4                         --------->YAB1  --------->TOE2(3)  <---------ICU4                      ------>MYB83    <---------ARR14(2)    --------->YAB1 ----->AHL20(2)       ------>MYB46(1)------>MYB46(1)      --------->GLK1(2)                     ----- ---ANAC55(2)       <---------MYB59  ------>MYB83        --------->YAB1                        ------ >CCA1(2)       ------>ZmHOX2a(1)  <---------MYB59    --------->YAB1                       ----------   aaaatacttgttcaattcctgaccaaataatactataccaaatccttatcactccataagaatcattttcactaagtttctaactatcaagtcaaaagaa  50800                                                                                --------->LBD16                                                                               <---------ANAC46                                     --------->YAB1                            <---------ANAC58                                    <---------ATHB12                   ---------->DOF2    --------->HSFB2a(2)            ------>MYB46(1)                ---------->DOF2    <---------HSFB2a(2)           --------->WOX13(1)    --------->ANAC58     <---------At5g28300 <---------ARR14(2)      ---------->DOF2  --------->CCA1(2)      <---------WRKY12 ---->MYB52(1)        --------->ANAC58   --------->ARR11(3)      <---------WRKY38(1) --->ARR11(1)         --------->ANAC58   <---------ARR11(3)  <------ZmHOX2a(1) <---------ANAC58 >DOF2              ---------->DOF2------>MYB83         --------->ANAC58   --------->ARR11(3)   acggttccaaaaccctactgactaaagcaaagagaccaatcaagatttagaaatagacaagcaggagtcaaaggaaagataccgtgatagcgataccctc  50900                     --------->At4g35610                     <---------At4g35610                     <---------ZAT2                     --------->ZAT2       ------->GAMYB            --------->MYB52(1)           <------------AtMYB77         --------->YAB1          <---------ARR11(3)                                              <---        <------ZmHOX2a(2)      --------->ANAC58     --------->AHL20(2)                           <---       <---------ARR11(3)      --------->ANAC58     <---------AHL20(2)                           <---       --------->ARR11(3)  --------->ANAC46   <---------DDF1                                ---------      <------ZmHOX2a(1)    --------->ANAC58  --------->ETT(2)                              --------->AHL20(2) ==============HOX2a_HOX2a --------->ANAC58  <---------ETT(2)--------->LBD16               <---------AHL20(2) ------>ZmHOX2a(1)  <---------ARR14(2)   <<<<<<<<<TAC1       ------>ZmHOX2a(1) --------->At5g28300 <---------HSFB2a(2)--------->ARR14(2)>>>>>>>>>>AtWER      ----------->RAV1(2)----------->GT1 <------   gtcctcgaggatcataacagcgtagctgcaagcaagctctccaactgtcgacatttttttatcctgaaacgattcaaaaacagtaacaatagattaattg  51000                                                                     --------->YAB1                                                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             <-----------RAV1(2) ------ANAC58       --------->AHL20(2)                    --------->ANAC58                   -------- ------ANAC46     --------->TOE1(3)                       --------->ANAC58               --------->YAB1 ------ANAC58     --------->TOE2(3)                       -------->P--------->ICU4     ----------->GT1 >ATHB12  <----------ID1                                --------->MYB46(3)         --------->YAB1 ---WOX13(1)      <----------DOF2            <---------ZAT6 ------->GAMYB         <---------ATHB12 <-   cttattcacaaaaaaacaaactttaaatccgttttaaaccaaaattagagtaagtcgaacaacccagacgatgatgaaatgccaataacaagtataaacg  51100                                                         --------->ATERF1(1)                                                         <------NtERF2                                                        <---------ERF1                                                        <---------DEAR4(2)                                                        <---------ORA47(2)                          <                                                        ------>NtERF2                               -                                                        <---------ATERF1(1)                         -                                                        <---------RAP2.3(1)                    ======                                                       <---------RAP2.3(3)                     <-----                                  <------ZmHOX2a(2)    <---------RAP2.3(2)                     <-----                      <---------MYB59       <----------DOF2                                 <--------          --------->GLK1(2)      --------->ARR11(3)    <---------DEAR3(1)                   ---------        *TSS          --------->TOE1(2)     <---------DAG2<---------ANAC46                  ---------     ----------->GT1  --------->TOE2(3)    <---------ANAC58                               --------->LBD16 ->MYB52(1) --------->YAB1       <---------ARR11(3)    <---------RAP2.6(2)               <---------ANAC46 -----ZmHOX2a(2)      --------->TOE2(2)    <---------ANAC58     <----------ID1          <---------LBD16   gatcaaatggagaatcatagactacctaagagtaagatcgaaaatgcttttcgcaaggcggcgagagagacaaaatttctagggtttggatgcggagacg  51200                                           --------->LBD16                              --------->ATHB12                              <---------ICU4                              -------->ATHB1   <-------TEIL               <--------HAHB4 ---------At4g35610           --------->AHL20(2) -------->GLK1(1)             <---------AHL20(2) -------->At4g35610           --------->ATHB51 ========================bZIP_DOF         ----------->RAV1(1) ----TGA1a                   <---------ATHB12      <---------ARR14(2) ----O2                      --------->ICU4<------NtERF2                          <---------AHL20(2) -ARR14(2)             <-----------GT1    --------->RAP2.6(2)               <-----------GT1 >ARR14(2)         <----------DOF2        --------->RAP2.3(2)         <---------AHL20(2) -->HVH21     ---------->DOF2<---------ATHB51      --------->ARR14(2) --------->AHL20(2)   ggagatgcagagtttataaagcttttatccaattatttgatgggccgcataaatattcgctaggcccattttttaattttacatatatttgttttcagta  51300                                                                                   <------MYB83                                                                                   <------MYB46(1)                                                                                   --------->MYB52(2)                                                                                  <---------AtMYB61                                                                                 <--------P                                                                                <-------GAMYB                                                                               <---------MYB46(3)                                                                               --------->MYB52(2)                                                                               <------MYB83                                                                               --------->MYB55(2)                                                                               --------->ATHB12     -                    --------->At5g28300                                        <------MYB46(1)      <                    --------->LBD16                              <---------WRKY18(1)      <---------LBD16              ---------->DOF2                                   --------->WRKY45<---------ANAC58   --             ------>MYB83--------->AHL20(2)                     --------->WRKY12<---------ANAC58-----             ------>MYB46(1)        --------->CCA1(2)           --------->WRKY38(1)<---------MYB46(3)           <---------MYB59     ---------->DOF2                <----------DOF2 <---------AtMYB61<-----           --------->TOE2(3)  --------->AHL20(2)        --------->CCA1(2)  <-----------RAV1(1) ------   ttgggccttcaaacctaatagccgtgaataaataaaagataagagcccaaattaagagatttgactttgaccagaaattgttggttggtttctagggaac  51400                                         --------->ANAC58                                         --------->ANAC58                                        --------->WOX13(1)                                    <------MYB83                              <-------MYC3                              ------->MYC3                    <-------MYC3    <------MYB46(1)               --------->AtLEC2 --------->ZAT2        --------->PCF5  --------->bZIP60(1)     --------->ALFIN1   <---------bZIP60(1)                   ------>ZmHOX2a(1)   --------->DEAR3(1)----------->HVH21--------->WRKY18(1)     <---------DAG2 -------->AtMYB61   <-----------HVH21<-----------HVH21   <---------GLK1(1) ---------ALFIN1    ------->MYC3<---------ZAT2          ------->TEIL ------->MYB46(3) ------->TEIL------->MYC2           <---------WOX13(1) ---->MYB46(3) <---------YAB1 <-------PIF5      --------->ANAC55(2)                    --------->ATHB12 ----KAN4(2)<---------ATHB12  ------->PIF5      <---------ANAC55(2)         >>>>>>>>>MYB98 --->SPL7 --------->WOX13(1)  <-------MYC2    --------->ICU4  <----------DOF2--------->YAB1----------   gaccaccgtggtccatcatgcatgtgacagcacgagcttggtcaagcaatacttgatggatgtccttttcgcactagtaacataattcttcatttgacat  51500                                                   <---------ANAC58                                                   <---------ANAC46                                          <---------YAB1                                         <-----------GT1                                     <---------AHL20(2)                                    <---------ARR11(3)                                    --------->AHL20(1)                                    <---------AHL20(1)                                    --------->AHL20(2)                                 --------->ATHB12                                    --------->ARR11(3)                                <---------YAB1                     --------->YAB1 <---------AHL20(2)      <-------TEIL   --------->YAB1 ->HVH21     --------->YAB1   <------ZmHOX2a(2)    <---------ANAC58       ---------->DOF2       <----   atttatagtcttcaataaacatatcatatgcgatccaatatattttcattttttcttgtacattcgtcttggtccaaaaatcacgagtttgattagttct  51600  Previous    Next  AGI:  At1g01100.1    Description:  60S acidic ribosomal protein P1 (RPP1A). Identical to 60S acidic ribosomal protein P1-1 (RPP1A) [Arabidopsis Thaliana] (GB:Q8LCW9;GB:Q9MAM5); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.2); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ62657.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) Range:  from: 50090    to: 51108    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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