Binding sequences from the transcription factors listed below were used for genomic
screenings. |
ABI3
(Target genes) |
ABI3/VP1 |
Arabidopsis thaliana |
909 |
At3g24650 |
Reidt W, Wohlfarth T, Ellerstrom M, Czihal A, Tewes A, Ezcurra I, Rask L, Baumlein H. 2000. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product. Plant J. 21:401-8. PubMed |
FUS3
(Target genes) |
ABI3/VP1 |
Arabidopsis thaliana |
1,159 |
At3g26790 |
Reidt W, Wohlfarth T, Ellerstrom M, Czihal A, Tewes A, Ezcurra I, Rask L, Baumlein H. 2000. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product. Plant J. 21:401-8. PubMed |
AtERF-1
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
649 |
At4g17500 |
Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M. 2000. Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell. 12:393-404. PubMed |
AtERF-2
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
649 |
At5g47220 |
Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M. 2000. Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell. 12:393-404. PubMed |
AtERF-3
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
1,807 |
At1g50640 |
Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M. 2000. Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell. 12:393-404. PubMed |
AtERF-4
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
1,981 |
At3g15210 |
Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M. 2000. Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell. 12:393-404. PubMed |
AtERF-5
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
649 |
At5g47230 |
Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M. 2000. Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell. 12:393-404. PubMed |
AtERF-7
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
344 |
At3g20310 |
Song CP, Agarwal M, Ohta M, Guo Y, Halfter U, Wang P, Zhu JK. 2005. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses. Plant Cell 17: 2384-96. PubMed |
AtTINY2
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
657 |
At5g11590 |
Wei G, Pan Y, Lei J, Zhu YX. 2005. Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. J Biochem Mol Biol 38: 440-6. PubMed |
DREB1A
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
550 |
At4g25480 |
Maruyama K, Sakuma Y, Kasuga M, Ito Y, Seki M, Goda H, Shimada Y, Yoshida S, Shinozaki K, Yamaguchi-Shinozaki K. 2004. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. : Plant J. 38:982-93. PubMed
Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe H, Narusaka M, Shinozaki K, Yamaguchi-Shinozaki K. 2003. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J. 34:137-48. PubMed
Gilmour SJ, Zarka DG, Stockinger EJ, Salazar MP, Houghton JM, Thomashow MF. 1998. Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J. 16:433-42. PubMed
Sakuma Y, Maruyama K, Osakabe Y, Qin F, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. 2006. Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell 18: 1292-309. PubMed |
DREB1B
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
150 |
At4g25490 |
Stockinger EJ, Gilmour SJ, Thomashow MF. 1997. Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit. Proc Natl Acad Sci U S A. 94:1035-40. PubMed
Gilmour SJ, Zarka DG, Stockinger EJ, Salazar MP, Houghton JM, Thomashow MF. 1998. Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J. 16:433-42. PubMed |
DREB1C
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
150 |
At4g25470 |
Gilmour SJ, Zarka DG, Stockinger EJ, Salazar MP, Houghton JM, Thomashow MF. 1998. Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J. 16:433-42. PubMed |
DREB2A
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
471 |
At5g05410 |
Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe H, Narusaka M, Shinozaki K, Yamaguchi-Shinozaki K. 2003. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J. 34:137-48. PubMed
Sakuma Y, Maruyama K, Osakabe Y, Qin F, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. 2006. Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell 18: 1292-309. PubMed |
EIN3
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
2,022 |
At3g20770 |
Konishi M, Yanagisawa S. 2008. Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3. Plant J 55: 821-31. PubMed |
RAP2.2
(Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
7,028 |
At3g14230 |
Welsch R, Maass D, Voegel T, Dellapenna D, Beyer P. 2007. Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves. Plant Physiol 145: 1073-85. PubMed |
AtMYC2
(Target genes) |
bHLH |
Arabidopsis thaliana |
662 |
At1g32640 |
Yadav V, Mallappa C, Gangappa SN, Bhatia S, Chattopadhyay S. 2005. A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Plant Cell 17: 1953-66. PubMed |
ABI5
(Target genes) |
bZIP |
Arabidopsis thaliana |
685 |
At2g36270 |
Bensmihen S, Rippa S, Lambert G, Jublot D, Pautot V, Granier F, Giraudat J, Parcy F. 2002. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis. Plant Cell. 14:1391-403. PubMed
Carles C, Bies-Etheve N, Aspart L, Leon-Kloosterziel KM, Koornneef M, Echeverria M, Delseny M. 2002. Regulation of Arabidopsis thaliana Em genes: role of ABI5. : Plant J. 30:373-83. PubMed |
AREB1
(Target genes) |
bZIP |
Arabidopsis thaliana |
82 |
At1g45249 |
Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe H, Narusaka M, Shinozaki K, Yamaguchi-Shinozaki K. 2003. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J. 34:137-48. PubMed |
AREB2
(Target genes) |
bZIP |
Arabidopsis thaliana |
82 |
At3g19290 |
Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe H, Narusaka M, Shinozaki K, Yamaguchi-Shinozaki K. 2003. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J. 34:137-48. PubMed |
AtbZIP1
(Target genes) |
bZIP |
Arabidopsis thaliana |
415 |
At5g49450 |
Kang SG, Price J, Lin PC, Hong JC, Jang JC. 2010. The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding. Mol Plant. 3:361-73. PubMed |
BZIP12
(Target genes) |
bZIP |
Arabidopsis thaliana |
180 |
At2g41070 |
Bensmihen S, Rippa S, Lambert G, Jublot D, Pautot V, Granier F, Giraudat J, Parcy F. 2002. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis. Plant Cell. 14:1391-403. PubMed |
bZIP19
(Target genes) |
bZIP |
Arabidopsis thaliana |
380 |
At4g35040 |
Assunção AG, Herrero E, Lin YF, Huettel B, Talukdar S, Smaczniak C, Immink RG, van Eldik M, Fiers M, Schat H, Aarts 2010. Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency. Proc Natl Acad Sci USA. 107:10296-301. PubMed |
bZIP23
(Target genes) |
bZIP |
Arabidopsis thaliana |
380 |
At2g16770 |
Assunção AG, Herrero E, Lin YF, Huettel B, Talukdar S, Smaczniak C, Immink RG, van Eldik M, Fiers M, Schat H, Aarts 2010. Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency. Proc Natl Acad Sci USA. 107:10296-301. PubMed |
HY5
(Target genes) |
bZIP |
Arabidopsis thaliana |
2,466 |
At5g11260 |
Chattopadhyay S, Ang LH, Puente P, Deng XW, Wei N. 1998. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. Plant Cell. 10:673-83. PubMed
Cluis CP, Mouchel CF, Hardtke CS. 2004. The Arabidopsis transcription factor HY5 integrates light and hormone signaling pathways. Plant J. 38:332-47. PubMed
Song YH, Yoo CM, Hong AP, Kim SH, Jeong HJ, Shin SY, Kim HJ, Yun DJ, Lim CO, Bahk JD, Lee SY, Nagao RT, Key JL, Hong JC. 2008. DNA Binding Study Identifies C-box and Hybrid C/G-box or C/A-box Motifs as High-Affinity Binding Sites for STF1 and HY5 Proteins. Plant Physiol : (Epub ahead of print). PubMed |
GATA-1
(Target genes) |
C2C2(Zn) GATA |
Arabidopsis thaliana |
9,893 |
At3g24050 |
Teakle GR, Manfield IW, Graham JF, Gilmartin PM. 2002. Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics. Plant Mol Biol. 50:43-57. PubMed |
GATA-2
(Target genes) |
C2C2(Zn) GATA |
Arabidopsis thaliana |
4,289 |
At2g45050 |
Teakle GR, Manfield IW, Graham JF, Gilmartin PM. 2002. Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics. Plant Mol Biol. 50:43-57. PubMed |
GATA-3
(Target genes) |
C2C2(Zn) GATA |
Arabidopsis thaliana |
4,289 |
At4g34680 |
Teakle GR, Manfield IW, Graham JF, Gilmartin PM. 2002. Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics. Plant Mol Biol. 50:43-57. PubMed |
GATA-4
(Target genes) |
C2C2(Zn) GATA |
Arabidopsis thaliana |
4,289 |
At3g60530 |
Teakle GR, Manfield IW, Graham JF, Gilmartin PM. 2002. Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics. Plant Mol Biol. 50:43-57. PubMed |
SUP
(Target genes) |
C2H2(Zn) |
Arabidopsis thaliana |
502 |
At3g23130 |
Dathan N, Zaccaro L, Esposito S, Isernia C, Omichinski JG, Riccio A, Pedone C, Di Blasio B, Fattorusso R, Pedone PV. 2002. The Arabidopsis SUPERMAN protein is able to specifically bind DNA through its single Cys2-His2 zinc finger motif. Nucleic Acids Res. 30:4945-51. PubMed |
TAC1
(Target genes) |
C2H2(Zn) |
Arabidopsis thaliana |
2,315 |
At3g09290 |
Ren S, Mandadi KK, Boedeker AL, Rathore KS, McKnight TD. 2007. Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1. Plant Cell 19: 23-31. PubMed |
AtSR1
(Target genes) |
CAMTA |
Arabidopsis thaliana |
427 |
At2g22300 |
Yang T, Poovaiah BW. 2002. A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. J Biol Chem 277: 45049-58. PubMed |
CAMTA1
(Target genes) |
CAMTA |
Arabidopsis thaliana |
39 |
At5g09410 |
Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF. 2009. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell. 21:972-84. PubMed |
CAMTA2
(Target genes) |
CAMTA |
Arabidopsis thaliana |
39 |
At5g64220 |
Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF. 2009. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell. 21:972-84. PubMed |
CAMTA3
(Target genes) |
CAMTA |
Arabidopsis thaliana |
822 |
At2g22300 |
Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF. 2009. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell. 21:972-84. PubMed
Nie H, Zhao C, Wu G, Wu Y, Chen Y, Tang D. 2012. SR1, a calmodulin-binding transcription factor, modulates plant defense and ethylene-induced senescence by directly regulating NDR1 and EIN3. Plant Physiol. 158:1847-59 PubMed |
CAMTA5
(Target genes) |
CAMTA |
Arabidopsis thaliana |
39 |
At4g16150 |
Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF. 2009. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell. 21:972-84. PubMed |
CBP60g
(Target genes) |
CAMTA-like |
Arabidopsis thaliana |
2,730 |
At5g26920 |
Zhang Y, Xu S, Ding P, Wang D, Cheng YT, He J, Gao M, Xu F, Li Y, Zhu Z, Li X, Zhang Y. 2010. Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors. Proc Natl Acad Sci USA. 107:18220-5. PubMed |
SARD1
(Target genes) |
CAMTA-like |
Arabidopsis thaliana |
2,730 |
At1g73805 |
Zhang Y, Xu S, Ding P, Wang D, Cheng YT, He J, Gao M, Xu F, Li Y, Zhu Z, Li X, Zhang Y. 2010. Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors. Proc Natl Acad Sci USA. 107:18220-5. PubMed |
E2Fa
(Target genes) |
E2F/DP |
Arabidopsis thaliana |
2,302 |
At2g36010 |
Mariconti L, Pellegrini B, Cantoni R, Stevens R, Bergounioux C, Cella R, Albani D. 2002. The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants. J Biol Chem. 277:9911-9. PubMed
Egelkrout EM, Mariconti L, Settlage SB, Cella R, Robertson D, Hanley-Bowdoin L. 2002. Two E2F elements regulate the proliferating cell nuclear antigen promoter differently during leaf development. Plant Cell. 14:3225-36. PubMed
Ramirez-Parra E, Gutierrez C. 2007. E2F regulates FASCIATA1, a chromatin assembly gene whose loss switches on the endocycle and activates gene expression by changing the epigenetic status. Plant Physiol 144: 105-20. PubMed |
E2Fb
(Target genes) |
E2F/DP |
Arabidopsis thaliana |
605 |
At5g22220 |
de Jager SM, Menges M, Bauer UM, Murra JA. 2001. Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities. Plant Mol Biol. 47:555-68. PubMed
Mariconti L, Pellegrini B, Cantoni R, Stevens R, Bergounioux C, Cella R, Albani D. 2002. The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants. J Biol Chem. 277:9911-9. PubMed
Egelkrout EM, Mariconti L, Settlage SB, Cella R, Robertson D, Hanley-Bowdoin L. 2002. Two E2F elements regulate the proliferating cell nuclear antigen promoter differently during leaf development. Plant Cell. 14:3225-36. PubMed |
E2Fc
(Target genes) |
E2F/DP |
Arabidopsis thaliana |
2,754 |
At1g47870 |
Mariconti L, Pellegrini B, Cantoni R, Stevens R, Bergounioux C, Cella R, Albani D. 2002. The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants. J Biol Chem. 277:9911-9. PubMed
Egelkrout EM, Mariconti L, Settlage SB, Cella R, Robertson D, Hanley-Bowdoin L. 2002. Two E2F elements regulate the proliferating cell nuclear antigen promoter differently during leaf development. Plant Cell. 14:3225-36. PubMed
Stevens R, Mariconti L, Rossignol P, Perennes C, Cella R, Bergounioux C. 2002. Two E2F sites in the Arabidopsis MCM3 promoter have different roles in cell cycle activation and meristematic expression. J Biol Chem. 277:32978-84. PubMed |
E2Fd
(Target genes) |
E2F/DP |
Arabidopsis thaliana |
2,754 |
At5g14960 |
Mariconti L, Pellegrini B, Cantoni R, Stevens R, Bergounioux C, Cella R, Albani D. 2002. The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants. J Biol Chem. 277:9911-9. PubMed
Egelkrout EM, Mariconti L, Settlage SB, Cella R, Robertson D, Hanley-Bowdoin L. 2002. Two E2F elements regulate the proliferating cell nuclear antigen promoter differently during leaf development. Plant Cell. 14:3225-36. PubMed
Stevens R, Mariconti L, Rossignol P, Perennes C, Cella R, Bergounioux C. 2002. Two E2F sites in the Arabidopsis MCM3 promoter have different roles in cell cycle activation and meristematic expression. J Biol Chem. 277:32978-84. PubMed |
E2Fe
(Target genes) |
E2F/DP |
Arabidopsis thaliana |
396 |
At3g48160 |
Mariconti L, Pellegrini B, Cantoni R, Stevens R, Bergounioux C, Cella R, Albani D. 2002. The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants. J Biol Chem. 277:9911-9. PubMed
Egelkrout EM, Mariconti L, Settlage SB, Cella R, Robertson D, Hanley-Bowdoin L. 2002. Two E2F elements regulate the proliferating cell nuclear antigen promoter differently during leaf development. Plant Cell. 14:3225-36. PubMed |
E2Ff
(Target genes) |
E2F/DP |
Arabidopsis thaliana |
114 |
At3g01330 |
Mariconti L, Pellegrini B, Cantoni R, Stevens R, Bergounioux C, Cella R, Albani D. 2002. The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants. J Biol Chem. 277:9911-9. PubMed |
ARR1
(Target genes) |
GARP/ARR-B |
Arabidopsis thaliana |
8,748 |
At3g16857 |
Sakai H, Aoyama T, Oka A. 2000. Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators. Plant J. 24:703-11. PubMed |
ARR2
(Target genes) |
GARP/ARR-B |
Arabidopsis thaliana |
13,762 |
At4g16110 |
Sakai H, Aoyama T, Oka A. 2000. Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators. Plant J. 24:703-11. PubMed
Lohrmann J, Sweere U, Zabaleta E, Baurle I, Keitel C, Kozma-Bognar L, Brennicke A, Schafer E, Kudla J, Harter K. 2001. The response regulator ARR2: a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial complex I in Arabidopsis. Mol Genet Genomics. 265:2-13.PubMed |
ZML2
(Target genes) |
GATA |
Arabidopsis thaliana |
12,655 |
At1g51600 |
Shaikhali J, de Dios Barajas-Lopéz J, Otvös K, Kremnev D, Garcia AS, Srivastava V, Wingsle G, Bako L, Strand A. 2012. The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis. Plant Cell. 24:3009-25. PubMed |
GRF7
(Target genes) |
GRF |
Arabidopsis thaliana |
6,219 |
At5g53660 |
Kim JS, Mizoi J, Kidokoro S, Maruyama K, Nakajima J, Nakashima K, Mitsuda N, Takiguchi Y, Ohme-Takagi M, Kondou Y, Yoshizumi T, Matsui M, Shinozaki K, Yamaguchi-Shinozaki K. 2012. Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A. Plant Cell. 24:3393-405. PubMed |
ATML1
(Target genes) |
HD-ZIP |
Arabidopsis thaliana |
130 |
At4g21750 |
Abe M, Takahashi T, Komeda Y. 2001. Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein. Plant J. 26:487-94. PubMed |
PDF2
(Target genes) |
HD-ZIP |
Arabidopsis thaliana |
130 |
At4g04890 |
Abe M, Katsumata H, Komeda Y, Takahashi T. 2003. Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis. Development. 130:635-43. PubMed |
TBF1
(Target genes) |
HSF |
Arabidopsis thaliana |
33,195 |
At4g36990 |
Pajerowska-Mukhtar KM, Wang W, Tada Y, Oka N, Tucker CL, Fonseca JP, Dong X. 2012. The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition. Curr Biol. 22:103-12. PubMed |
LFY
(Target genes) |
LFY |
Arabidopsis thaliana |
25,892 |
At5g61850 |
Hamès C, Ptchelkine D, Grimm C, Thevenon E, Moyroud E, Gérard F, Martiel JL, Benlloch R, Parcy F, Müller CW. 2008. Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins. EMBO J. 27:2628-37.
PubMed
Benlloch R, Kim MC, Sayou C, Thévenon E, Parcy F, Nilsson O. 2011. Integrating long-day flowering signals: a LEAFY binding site is essential for proper photoperiodic activation of APETALA1. Plant J. 67:1094-102 PubMed |
AGL20
(Target genes) |
MADS |
Arabidopsis thaliana |
645 |
At2g45660 |
Liu C, Xi W, Shen L, Tan C, Yu H. 2009. Regulation of floral patterning by flowering time genes. Dev Cell. 16:711-22. PubMed |
AGL22
(Target genes) |
MADS |
Arabidopsis thaliana |
645 |
At2g22540 |
Liu C, Xi W, Shen L, Tan C, Yu H. 2009. Regulation of floral patterning by flowering time genes. Dev Cell.
16:711-22. PubMed |
AGL24
(Target genes) |
MADS |
Arabidopsis thaliana |
645 |
At4g24540 |
Liu C, Xi W, Shen L, Tan C, Yu H. 2009. Regulation of floral patterning by flowering time genes. Dev Cell.
16:711-22. PubMed |
AGL25
(Target genes) |
MADS |
Arabidopsis thaliana |
192 |
At5g10140 |
Deng W, Ying H, Helliwell CA, Taylor JM, Peacock WJ, Dennis ES. 2011. FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Proc Natl Acad Sci USA. 108:6680-5. PubMed |
AtCCA1
(Target genes) |
MYB |
Arabidopsis thaliana |
309 |
At2g46830 |
Hazen SP, Schultz TF, Pruneda-Paz JL, Borevitz JO, Ecker JR, Kay SA. 2005. LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proc Natl Acad Sci U S A 102: 10387-92. PubMed |
AtLHY
(Target genes) |
MYB |
Arabidopsis thaliana |
309 |
At1g01060 |
Hazen SP, Schultz TF, Pruneda-Paz JL, Borevitz JO, Ecker JR, Kay SA. 2005. LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proc Natl Acad Sci U S A 102: 10387-92. PubMed |
AtMYB44
(Target genes) |
MYB |
Arabidopsis thaliana |
485 |
At5g67300 |
Kirik V, Kolle K, Misera S, Baumlein H. 1998. Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants. Plant Mol Biol. 37:819-27. PubMed |
AtWER
(Target genes) |
MYB |
Arabidopsis thaliana |
875 |
At5g14750 |
Koshino-Kimura Y, Wada T, Tachibana T, Tsugeki R, Ishiguro S, Okada K. 2005. Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis. Plant Cell Physiol 46: 817-26. PubMed |
MYB1
(Target genes) |
MYB |
Arabidopsis thaliana |
962 |
At3g09230 |
Urao T, Yamaguchi-Shinozaki K, Urao S, Shinozaki K. 1993. An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Plant Cell. 5:1529-39. PubMed |
MYB2
(Target genes) |
MYB |
Arabidopsis thaliana |
5,398 |
At2g47190 |
Hoeren FU, Dolferus R, Wu Y, Peacock WJ, Dennis ES. 1998. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen. Genetics. 149:479-90. PubMed
Urao T, Yamaguchi-Shinozaki K, Urao S, Shinozaki K. 1993. An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Plant Cell. 5:1529-39. PubMed |
MYB61
(Target genes) |
MYB |
Arabidopsis thaliana |
64 |
At1g09540 |
Romano JM, Dubos C, Prouse MB, Wilkins O, Hong H, Poole M, Kang KY, Li E, Douglas CJ, Western TL, Mansfield SD, Campbell MM. 2012. AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network. New Phytol. 195:774-86. PubMed |
MYB80
(Target genes) |
MYB |
Arabidopsis thaliana |
3,477 |
At5g56110 |
Phan HA, Iacuone S, Li SF, Parish RW. 2011. The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana. Plant Cell. 23:2209-24. PubMed |
MYB98
(Target genes) |
MYB |
Arabidopsis thaliana |
10,299 |
At4g18770 |
Punwani JA, Rabiger DS, Drews GN. 2007. MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins. Plant Cell 19: 2557-68. PubMed |
ANAC019
(Target genes) |
NAC |
Arabidopsis thaliana |
104 |
At1g52890 |
Tran LS, Nakashima K, Sakuma Y, Simpson SD, Fujita Y, Maruyama K, Fujita M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. 2004. Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. Plant Cell. 16:2481-98. PubMed |
ANAC055
(Target genes) |
NAC |
Arabidopsis thaliana |
104 |
At3g15500 |
Tran LS, Nakashima K, Sakuma Y, Simpson SD, Fujita Y, Maruyama K, Fujita M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. 2004. Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. Plant Cell. 16:2481-98. PubMed |
ANAC072
(Target genes) |
NAC |
Arabidopsis thaliana |
104 |
At4g27410 |
Tran LS, Nakashima K, Sakuma Y, Simpson SD, Fujita Y, Maruyama K, Fujita M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. 2004. Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. Plant Cell. 16:2481-98. PubMed |
NAM
(Target genes) |
NAC |
Arabidopsis thaliana |
980 |
At1g52880 |
Duval M, Hsieh TF, Kim SY, Thomas TL. 2002. Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily. Plant Mol Biol. 50:237-48. PubMed |
NAP
(Target genes) |
NAC |
Arabidopsis thaliana |
435 |
At1g69490 |
Zhang K, Gan SS. 2012. An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves. Plant Physiol. 158:961-9. PubMed |
SPL1
(Target genes) |
SBP |
Arabidopsis thaliana |
382 |
At2g47070 |
Cardon G, Hohmann S, Klein J, Nettesheim K, Saedler H, Huijser P. 1999. Molecular characterisation of the Arabidopsis SBP-box genes. Gene. 237:91-104. PubMed |
SPL4
(Target genes) |
SBP |
Arabidopsis thaliana |
717 |
At1g53160 |
Yamasaki K, Kigawa T, Inoue M, Tateno M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Nunokawa E, Ishizuka Y, Terada T, Shirouzu M, Osanai T, Tanaka A, Seki M, Shinozaki K, Yokoyama S. 2004. A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors. : J Mol Biol. 337:49-63. PubMed
Cardon G, Hohmann S, Klein J, Nettesheim K, Saedler H, Huijser P. 1999. Molecular characterisation of the Arabidopsis SBP-box genes. Gene. 237:91-104. PubMed |
SPL5
(Target genes) |
SBP |
Arabidopsis thaliana |
382 |
At3g15270 |
Cardon G, Hohmann S, Klein J, Nettesheim K, Saedler H, Huijser P. 1999. Molecular characterisation of the Arabidopsis SBP-box genes. Gene. 237:91-104. PubMed |
SPL7
(Target genes) |
SBP |
Arabidopsis thaliana |
335 |
At5g18830 |
Yamasaki K, Kigawa T, Inoue M, Tateno M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Nunokawa E, Ishizuka Y, Terada T, Shirouzu M, Osanai T, Tanaka A, Seki M, Shinozaki K, Yokoyama S. 2004. A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors. : J Mol Biol. 337:49-63. PubMed |
GT-1
(Target genes) |
Trihelix |
Arabidopsis thaliana |
3,703 |
At1g13450 |
Hiratsuka K, Wu X, Fukuzawa H, Chua NH. 1994. Molecular dissection of GT-1 from Arabidopsis. Plant Cell. 6:1805-13. PubMed |
GT-2
(Target genes) |
Trihelix |
Arabidopsis thaliana |
513 |
At1g76890 |
Kuhn RM, Caspar T, Dehesh K, Quail PH. 1993. DNA binding factor GT-2 from Arabidopsis. Plant Mol Biol. 23:337-48. PubMed |
GT-3b
(Target genes) |
Trihelix |
Arabidopsis thaliana |
4,912 |
At2g38250 |
Park HC, Kim ML, Kang YH, Jeon JM, Yoo JH, Kim MC, Park CY, Jeong JC, Moon BC, Lee JH, Yoon HW, Lee SH, Chung WS, Lim CO, Lee SY, Hong JC, Cho MJ. 2004. Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor. Plant Physiol. 135:2150-61. PubMed |
WRKY11
(Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
1,855 |
At4g31550 |
Ciolkowski I, Wanke D, Birkenbihl RP, Somssich IE. 2008. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function. Plant Mol Biol 68: 81-92. PubMed |
WRKY18
(Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
5,705 |
At4g31800 |
Du L, Chen Z. 2000. Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis. Plant J. 24:837-47. PubMed
Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. PubMed
Chen C, Chen Z. 2002. Potentiation of developmentally regulated plant defense response by AtWRKY18, a pathogen-induced Arabidopsis transcription factor. Plant Physiol. 129:706-16. PubMed
Xu X, Chen C, Fan B, Chen Z. 2006. Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors. Plant Cell 18: 1310-26. PubMed |
WRKY26
(Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
3,765 |
At5g07100 |
Ciolkowski I, Wanke D, Birkenbihl RP, Somssich IE. 2008. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function. Plant Mol Biol 68: 81-92. PubMed |
WRKY38
(Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
3,131 |
At5g22570 |
Kim KC, Lai Z, Fan B, Chen Z. 2008. Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Plant Cell 20: 2357-71. PubMed
Ciolkowski I, Wanke D, Birkenbihl RP, Somssich IE. 2008. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function. Plant Mol Biol 68: 81-92. PubMed |
WRKY40
(Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
641 |
At1g80840 |
Xu X, Chen C, Fan B, Chen Z. 2006. Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors. Plant Cell 18: 1310-26. PubMed |
WRKY43
(Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
3,131 |
At2g46130 |
Ciolkowski I, Wanke D, Birkenbihl RP, Somssich IE. 2008. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function. Plant Mol Biol 68: 81-92. PubMed |
WRKY6
(Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
2,977 |
At1g62300 |
Robatzek S, Somssich IE. 2002. Targets of AtWRKY6 regulation during plant senescence and pathogen defense. Genes Dev. 16:1139-49. PubMed
Ciolkowski I, Wanke D, Birkenbihl RP, Somssich IE. 2008. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function. Plant Mol Biol 68: 81-92. PubMed |
WRKY62
(Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
641 |
At5g01900 |
Kim KC, Lai Z, Fan B, Chen Z. 2008. Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Plant Cell 20: 2357-71. PubMed |
WRKY63
(Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
1,410 |
At1g66600 |
Ren X, Chen Z, Liu Y, Zhang H, Zhang M, Liu Q, Hong X, Zhu JK, Gong Z. 2010. ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis. Plant J. 63:417-29 PubMed |
|
|
|
|
| Total Numbers: |
| Factors: |
85 |
| Families: |
21 |
| Binding sites: |
226,798 |
|
|