Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation   - Matrix-Based Screenings   - Pattern-Based Screenings   - Combinatorial Elements   - Small RNAs   - MicroRNAs Citations Publications Contact Links Disclaimer	MicroRNAs annotated to AthaMap Identification of putative microRNA target sites in the genome of Arabidopsis thaliana. A. thaliana microRNA screening sequences were used at http://plantgrn.noble.org/psRNATarget/ for screening of A. thaliana chromosomes (TAIR8 genome release). ID AthaMap Screening Sequence Genomic Hits MIR156A-F TGACAGAAGAGAGTGAGCAC 241 MIR156G CGACAGAAGAGAGTGAGCAC 230 MIR156H TGACAGAAGAAAGAGAGCAC 253 MIR157A-C TTGACAGAAGATAGAGAGCAC 245 MIR157D TGACAGAAGATAGAGAGCAC 236 MIR158A TCCCAAATGTAGACAAAGCA 195 MIR158B CCCCAAATGTAGACAAAGCA 176 MIR159A TTTGGATTGAAGGGAGCTCTA 261 MIR159B TTTGGATTGAAGGGAGCTCTT 239 MIR159C TTTGGATTGAAGGGAGCTCCT 258 MIR160A-C TGCCTGGCTCCCTGTATGCCA 121 MIR161.1 TGAAAGTGACTACATCGGGGT 223 MIR161.2 TCAATGCATTGAAAGTGACTA 222 MIR162A/B TCGATAAACCTCTGCATCCAG 163 MIR163 TTGAAGAGGACTTGGAACTTCGAT 212 MIR164A/B TGGAGAAGCAGGGCACGTGCA 245 MIR164C TGGAGAAGCAGGGCACGTGCG 248 MIR165A/B TCGGACCAGGCTTCATCCCCC 151 MIR166A-G TCGGACCAGGCTTCATTCCCC 183 MIR167A/B TGAAGCTGCCAGCATGATCTA 209 MIR167C TAAGCTGCCAGCATGATCTTG 216 MIR167D TGAAGCTGCCAGCATGATCTGG 208 MIR168A/B TCGCTTGGTGCAGGTCGGGAA 154 MIR169A CAGCCAAGGATGACTTGCCGA 188 MIR169B/C CAGCCAAGGATGACTTGCCGG 178 MIR169D-G TGAGCCAAGGATGACTTGCCG 208 MIR169G* TCCGGCAAGTTGACCTTGGCT 169 MIR169H-N TAGCCAAGGATGACTTGCCTG 194 MIR170 TGATTGAGCCGTGTCAATATC 217 MIR171A TGATTGAGCCGCGCCAATATC 169 MIR171B/C TTGAGCCGTGCCAATATCACG 197 MIR172A/B AGAATCTTGATGATGCTGCAT 225 MIR172B* GCAGCACCATTAAGATTCAC 189 MIR172C/D AGAATCTTGATGATGCTGCAG 231 MIR172E GGAATCTTGATGATGCTGCAT 227 MIR173 TTCGCTTGCAGAGAGAAATCAC 210 MIR1886.1 TGAGAGAAGTGAGATGAAATC 283 MIR1886.2 TGAGATGAAATCTTTGATTGG 238 MIR1886.3 AATTAAAGATTTCATCTTACT 243 MIR1887 TACTAAGTAGAGTCTAAGAGA 216 MIR1888 TAAGTTAAGATTTGTGAAGAA 246 MIR2111A* GTCCTCGGGATGCGGATTACC 161 MIR2111A/B TAATCTGCATCCTGAGGTTTA 265 MIR2111B* ATCCTCGGGATACAGTTTACC 216 MIR2112-3P CTTTATATCCGCATTTGCGCA 226 MIR2112-5P CGCAAATGCGGATATCAATGT 208 MIR2933A/B GAAATCGGAGAGGAAATTCGCC 279 MIR2934 TCTTTCTGCAAACGCCTTGGA 209 MIR2935 TGGAATCACACGGTCGTCATTC 207 MIR2936 CTTGAGAGAGAGAACACAGACG 232 MIR2937 ATAAGAGCTGTTGAAGGAGTC 235 MIR2938 GATCTTTTGAGAGGGTTCCAG 233 MIR2939 TAACGCACAACACTAAGCCAT 200 MIR319A/B TTGGACTGAAGGGAGCTCCCT 209 MIR319C TTGGACTGAAGGGAGCTCCTT 216 MIR3434 ACTTGGCTGATTCTATTATT 230 MIR3434* TCAGAGTATCAGCCATGTGA 217 MIR3440B-3P TGGATTGGTCAAGGGAAGCGT 241 MIR3440B-5P TTTTCTTGGCCCATCCACTTC 229 MIR390A/B AAGCTCAGGAGGGATAGCGCC 220 MIR391 TTCGCAGGAGAGATAGCGCCA 197 MIR3932A/B AACTTTGTGATGACAACGAAG 232 MIR3933 AGAAGCAAAATGACGACTCGG 238 MIR393A/B TCCAAAGGGATCGCATTGATCC 173 MIR394A/B TTGGCATTCTGTCCACCTCC 193 MIR395A/D/E CTGAAGTGTTTGGGGGAACTC 248 MIR395B/C/F CTGAAGTGTTTGGGGGGACTC 247 MIR396A TTCCACAGCTTTCTTGAACTG 234 MIR396B TTCCACAGCTTTCTTGAACTT 236 MIR397A TCATTGAGTGCAGCGTTGATG 220 MIR397B TCATTGAGTGCATCGTTGATG 234 MIR398A TGTGTTCTCAGGTCACCCCTT 210 MIR398B/C TGTGTTCTCAGGTCACCCCTG 174 MIR399A TGCCAAAGGAGATTTGCCCTG 181 MIR399B/C TGCCAAAGGAGAGTTGCCCTG 203 MIR399D TGCCAAAGGAGATTTGCCCCG 172 MIR399E TGCCAAAGGAGATTTGCCTCG 203 MIR399F TGCCAAAGGAGATTTGCCCGG 190 MIR400 TATGAGAGTATTATAAGTCAC 251 MIR401 CGAAACTGGTGTCGACCGACA 247 MIR402 TTCGAGGCCTATTAAACCTCTG 227 MIR403 TTAGATTCACGCACAAACTCG 237 MIR404 ATTAACGCTGGCGGTTGCGGCAGC 122 MIR405A/B/D ATGAGTTGGGTCTAACCCATAACT 148 MIR406 TAGAATGCTATTGTAATCCAG 230 MIR407 TTTAAATCATATACTTTTGGT 251 MIR408 ATGCACTGCCTCTTCCCTGGC 163 MIR413 ATAGTTTCTCTTGTTCTGCAC 237 MIR414 TCATCTTCATCATCATCGTCA 314 MIR415 AACAGAGCAGAAACAGAACAT 258 MIR416 GGTTCGTACGTACACTGTTCA 194 MIR417 GAAGGTAGTGAATTTGTTCGA 238 MIR418 TAATGTGATGATGAACTGACC 233 MIR419 TTATGAATGCTGAGGATGTTG 239 MIR420 TAAACTAATCACGGAAATGCA 240 MIR4221 TTTTCCTCTGTTGAATTCTTGC 248 MIR4227 TCACTGGTACCAATCATTCCA 210 MIR4228 ATAGCCTTGAACGCCGTCGTT 183 MIR4239 TTTGTTATTTTCGCATGCTCC 243 MIR4240 TGACTAGACCCGTAACATTAC 217 MIR4243 TTGAAATTGTAGATTTCGTAC 249 MIR426 TTTTGGAAATTTGTCCTTACG 252 MIR447A/B TTGGGGACGAGATGTTTTGTTG 246 MIR447C TTGGGGACGACATCTTTTGTTG 242 MIR472 TTTTTCCTACTCCGCCCATACC 237 MIR771 TGAGCCTCTGTGGTAGCCCTCA 165 MIR773 TTTGCTTCCAGCTTTTGTCTC 245 MIR773B TTTGATTCCAGCTTTTGTCTC 239 MIR773B* GGCAATAACTTGAGCAAACA 211 MIR774 TTGGTTACCCATATGGCCATC 220 MIR774B TGAGATGAAGATATGGGTGAT 245 MIR774B* CATCCATATTTTCATCTCGAA 236 MIR775 TTCGATGTCTAGCAGTGCCA 189 MIR776 TCTAAGTCTTCTATTGATGTT 234 MIR777 TACGCATTGAGTTTCGTTGCTT 175 MIR778 TGGCTTGGTTTATGTACACCG 223 MIR779.1 TTCTGCTATGTTGCTGCTCAT 235 MIR779.2 TGATTGGAAATTTCGTTGACT 238 MIR780.1 TCTAGCAGCTGTTGAGCAGGT 201 MIR780.2 TTCTTCGTGAATATCTGGCAT 247 MIR781 TTAGAGTTTTCTGGATACTTA 243 MIR782 ACAAACACCTTGGATGTTCTT 202 MIR783 AAGCTTTGCTCGTTCATGTTC 220 MIR822 TGCGGGAAGCATTTGCACATG 212 MIR823 TGGGTGGTGATCATATAAGAT 226 MIR824 TAGACCATTTGTGAGAAGGGA 226 MIR825 TTCTCAAGAAGGTGCATGAAC 220 MIR826 TAGTCCGGTTTTGGATACGTG 224 MIR827 TTAGATGACCATCAACAAACT 218 MIR828 TCTTGCTTAAATGAGTATTCCA 226 MIR829.1 AGCTCTGATACCAAATGATGGAAT 197 MIR829.2 CAAATTAAAGCTTCAAGGTAG 239 MIR830 TAACTATTTTGAGAAGAAGTG 246 MIR830* TCTTCTCCAAATAGTTTAGGTT 224 MIR831 TGATCTCTTCGTACTCTTCTTG 221 MIR832-3P TTGATTCCCAATCCAAGCAAG 219 MIR832-5P TGCTGGGATCGGGAATCGAAA 209 MIR833-3P TAGACCGATGTCAACAAACAAG 203 MIR833-5P TGTTTGTTGTACTCGGTCTAGT 266 MIR834 TGGTAGCAGTAGCGGTGGTAA 245 MIR835-3P TGGAGAAGATACGCAAGAAAG 248 MIR835-5P TTCTTGCATATGTTCTTTATC 250 MIR836 TCCTGTGTTTCCTTTGATGCGTGG 171 MIR837-3P AAACGAACAAAAAACTGATGG 247 MIR837-5P ATCAGTTTCTTGTTCGTTTCA 241 MIR838 TTTTCTTCTACTTCTTGCACA 253 MIR839 TACCAACCTTTCATCGTTCCC 174 MIR840 ACACTGAAGGACCTAAACTAAC 183 MIR841 TACGAGCCACTTGAAACTGAA 182 MIR841B TACGAGCCACTGGAAACTGAA 181 MIR841B* CAATTTCTAGTGGGTCGTATT 220 MIR842 TCATGGTCAGATCCGTCATCC 235 MIR843 TTTAGGTCGAGCTTCATTGGA 234 MIR844 TGGTAAGATTGCTTATAAGCT 234 MIR844* TTATAAGCCATCTTACTAGTT 226 MIR845A CGGCTCTGATACCAATTGATG 235 MIR845B TCGCTCTGATACCAAATTGATG 229 MIR846 TTGAATTGAAGTGCTTGAATT 252 MIR847 TCACTCCTCTTCTTCTTGATG 214 MIR848 TGACATGGGACTGCCTAAGCTA 177 MIR849 TAACTAAACATTGGTGTAGTA 236 MIR850 TAAGATCCGGACTACAACAAAG 219 MIR851-3P TGGGTGGCAAACAAAGACGAC 238 MIR851-5P TCTCGGTTCGCGATCCACAAG 172 MIR852 AAGATAAGCGCCTTAGTTCTG 221 MIR853 TCCCCTCTTTAGCTTGGAGAAG 138 MIR854A-E GATGAGGATAGGGAGGAGGAG 257 MIR855 AGCAAAAGCTAAGGAAAAGGAA 269 MIR856 TAATCCTACCAATAACTTCAGC 201 MIR857 TTTTGTATGTTGAAGGTGTAT 270 MIR858 TTTCGTTGTCTGTTCGACCTT 244 MIR859 TCTCTCTGTTGTGAAGTCAAA 267 MIR860 TCAATAGATTGGACTATGTAT 215 MIR861-3P GATGGATATGTCTTCAAGGAC 244 MIR861-5P CCTTGGAGAAATATGCGTCAA 202 MIR862-3P ATATGCTGGATCTACTTGAAG 237 MIR862-5P TCCAATAGGTCGAGCATGTGC 144 MIR863-3P TTGAGAGCAACAAGACATAAT 242 MIR863-5P TTATGTCTTGTTGATCTCAAT 241 MIR864-3P TAAAGTCAATAATACCTTGAAG 232 MIR864-5P TCAGGTATGATTGACTTCAAA 244 MIR865-3P TTTTTCCTCAAATTTATCCAA 247 MIR865-5P ATGAATTTGGATCTAATTGAG 246 MIR866-3P ACAAAATCCGTCTTTGAAGA 234 MIR866-5P TCAAGGAACGGATTTTGTTAA 242 MIR867 TTGAACATGGTTTATTAGGAA 241 MIR868 CTTCTTAAGTGCTGATAATGC 242 MIR869.1 ATTGGTTCAATTCTGGTGTTG 244 MIR869.2 TCTGGTGTTGAGATAGTTGAC 236 MIR870 TAATTTGGTGTTTCTTCGATC 234 Total number of genomic hits for 190 different screening sequences: 41,965 MicroRNA target genes 10,442 genes were predicted to be post-transcriptionally regulated by microRNAs since their transcribed regions are targets of at least one microRNA in antisense orientation. 3,008 genes are in common with the 9,166 predicted small RNA regulated genes, and a total number of 16,600 different genes are predicted targets of either small RNAs or microRNAs in antisense orientation. The complete lists of genes predicted to be down-regulated by microRNAs can be downloaded as text files: 10442.txt; 3008.txt; 16600.txt.
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