Genomic screenings with the matrices from transcription factors listed below were
performed using the thresholds stated in the table.
|
CBF (Target genes) |
- other |
several species |
7.24 |
3.98 |
52,737 |
- |
Shahmuradov IA, Gammerman AJ, Hancock JM, Bramley PM, Solovyev VV. 2003
PlantProm: a database of plant promoter sequences.
Nucleic Acids Res 31: 114-7. PubMed |
TBP (Target genes) |
- other |
several species |
10.98 |
5.16 |
16,229 |
- |
Shahmuradov IA, Gammerman AJ, Hancock JM, Bramley PM, Solovyev VV. 2003
PlantProm: a database of plant promoter sequences.
Nucleic Acids Res 31: 114-7. PubMed |
ARF1 (Target genes) |
ABI3/VP1 |
Arabidopsis thaliana |
14.23 |
9.05 |
4,633 |
At1g59750 |
Ulmasov T, Hagen G, Guilfoyle TJ. 1997. ARF1, a transcription factor that binds to auxin response elements. Science 276: 1865-8. PubMed |
AtLEC2 (Target genes) |
ABI3/VP1 |
Arabidopsis thaliana |
10.73 |
5.41 |
139,281 |
At1g28300 |
Braybrook SA, Stone SL, Park S, Bui AQ, Le BH, Fischer RL, Goldberg RB, Harada JJ. 2006. Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis. Proc Natl Acad Sci U S A 103: 3468-73. PubMed |
REM1(1) (Target genes) |
ABI3/VP1 |
Arabidopsis thaliana |
10.63 |
5.52 |
87,514 |
At4g31610 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
REM1(2) (Target genes) |
ABI3/VP1 |
Arabidopsis thaliana |
12.31 |
6.11 |
42,733 |
At4g31610 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ABI4(1) (Target genes) |
AP2/EREBP |
Zea mays |
13.83 |
8.83 |
12,816 |
- |
Niu X, Helentjaris T, Bate NJ. 2002
Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes.
Plant Cell 14: 2565-75. PubMed |
ABI4(2) (Target genes) |
AP2/EREBP |
Zea mays |
12.9 |
8.03 |
11,948 |
- |
Niu X, Helentjaris T, Bate NJ. 2002
Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes.
Plant Cell 14: 2565-75. PubMed |
ANT (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
18.39 |
11.06 |
294 |
At4g37750 |
DNA binding properties of the Arabidopsis floral development protein AINTEGUMENTA. 2000
Erratum in:
Nucleic Acids Res 2001 Mar 1;29(5):1261.
Nucleic Acids Res 28: 4076-82. PubMed |
At1g77200 (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
12.98 |
8.44 |
6,420 |
At1g77200 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ATERF1(1) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
12.97 |
5.42 |
150,504 |
At4g17500 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ATERF1(2) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
12.18 |
6.47 |
46,025 |
At4g17500 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
DDF1 (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
12.65 |
8.52 |
4,526 |
At1g12610 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
DEAR3(1) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
11.84 |
4.93 |
246,166 |
At2g23340 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
DEAR3(2) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
11.86 |
5.92 |
65,966 |
At2g23340 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
DEAR4(1) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
12.88 |
8.32 |
5,100 |
At4g36900 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
DEAR4(2) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
14.1 |
8.21 |
14,148 |
At4g36900 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
DREB2C(1) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
15.95 |
10.55 |
1,721 |
At2g40340 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
DREB2C(2) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
12.45 |
7.37 |
21,590 |
At2g40340 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ERF1 (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
13.51 |
8.2 |
15,180 |
At3g23240 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
NtERF2 (Target genes) |
AP2/EREBP |
Nicotiana tabacum |
9.73 |
4.15 |
465,303 |
- |
Hao D, Ohme-Takagi M, Yamasaki K. 2003
A modified sensor chip for surface plasmon resonance enables a rapid determination of sequence specificity of DNA-binding proteins.
FEBS Lett 536: 151-6. PubMed |
ORA47(1) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
12.93 |
8.19 |
8,264 |
At1g74930 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ORA47(2) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
13.51 |
8.02 |
13,382 |
At1g74930 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
RAP2.3(1) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
13.19 |
6.71 |
49,378 |
At3g16770 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
RAP2.3(2) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
12.79 |
7.21 |
27,883 |
At3g16770 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
RAP2.3(3) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
12.95 |
7.09 |
27,181 |
At3g16770 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
RAP2.6(1) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
15.21 |
9.85 |
5,157 |
At1g43160 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
RAP2.6(2) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
11.29 |
5.77 |
79,299 |
At1g43160 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
RAP2.6(3) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
11.89 |
6.05 |
46,204 |
At1g43160 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
RAV1(1) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
10.65 |
5.01 |
310,650 |
At1g13260 |
Kagaya Y, Ohmiya K, Hattori T. 1999
RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants.
Nucleic Acids Res 27: 470-8. PubMed |
RAV1(2) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
11.21 |
4.98 |
229,818 |
At1g13260 |
Kagaya Y, Ohmiya K, Hattori T. 1999
RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants.
Nucleic Acids Res 27: 470-8. PubMed |
RRTF1(1) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
14.3 |
8.74 |
9,998 |
At4g34410 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
RRTF1(2) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
13.46 |
8.76 |
8,542 |
At4g34410 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
RRTF1(3) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
14.22 |
8.65 |
8,358 |
At4g34410 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
TEIL (Target genes) |
AP2/EREBP |
Nicotiana tabacum |
8.38 |
3.81 |
602,109 |
- |
Kosugi S, Ohashi Y. 2000
Cloning and DNA-binding properties of a tobacco Ethylene-Insensitive3 (EIN3) homolog.
Nucleic Acids Res 28: 960-7. PubMed |
TOE1(1) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
12.39 |
7.11 |
15,303 |
At2g28550 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
TOE1(2) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
10.99 |
4.96 |
129,702 |
At2g28550 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
TOE1(3) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
10.25 |
4.73 |
203,237 |
At2g28550 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
TOE2(1) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
12.23 |
7.38 |
9,985 |
At5g60120 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
TOE2(2) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
11.05 |
5.56 |
64,050 |
At5g60120 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
TOE2(3) (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
9.14 |
3.51 |
696,630 |
At5g60120 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
WRI1 (Target genes) |
AP2/EREBP |
Arabidopsis thaliana |
19.35 |
6.03 |
39,795 |
At3g54320 |
Maeo K, Tokuda T, Ayame A, Mitsui N, Kawai T, Tsukagoshi H, Ishiguro S,Nakamura K. 2009. An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis. Plant J. 60:476-87. PubMed |
ETT(1) (Target genes) |
ARF |
Arabidopsis thaliana |
11.25 |
6.77 |
24,918 |
At2g33860 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ETT(2) (Target genes) |
ARF |
Arabidopsis thaliana |
11.71 |
5.73 |
61,629 |
At2g33860 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
AHL20(1) (Target genes) |
AT-Hook |
Arabidopsis thaliana |
8.89 |
4.22 |
467,577 |
At4g14465 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
AHL20(2) (Target genes) |
AT-Hook |
Arabidopsis thaliana |
8.2 |
2.76 |
2,080,516 |
At4g14465 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
DYT1 (Target genes) |
bHLH |
Arabidopsis thaliana |
16.25 |
9.86 |
1,378 |
At4g21330 |
Feng B, Lu D, Ma X, Peng Y, Sun Y, Ning G, Ma H. 2012 Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development. Plant J. doi:10.1111/j.1365-313X.2012.05104.x. PubMed |
MYC2 (Target genes) |
bHLH |
Arabidopsis thaliana |
10.97 |
5.76 |
73,002 |
At1g32640 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
MYC3 (Target genes) |
bHLH |
Arabidopsis thaliana |
10.11 |
5.27 |
146,162 |
At5g46760 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
MYC4 (Target genes) |
bHLH |
Arabidopsis thaliana |
11.04 |
7.04 |
24,551 |
At4g17880 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
OsbHLH66 (Target genes) |
bHLH |
Oryza sativa |
14.81 |
8.24 |
6,806 |
- |
Xue GP. 2005. A CELD-fusion method for rapid determination of the DNA-binding sequence specificity of novel plant DNA-binding proteins. Plant J 41: 638-49. PubMed |
PIF3(1) (Target genes) |
bHLH |
Arabidopsis thaliana |
19.88 |
10.89 |
1,154 |
At1g09530 |
Martinez-Garcia JF, Huq E, Quail PH. 2000
Direct targeting of light signals to a promoter element-bound transcription factor.
Science 288: 859-63. PubMed |
PIF3(2) (Target genes) |
bHLH |
Arabidopsis thaliana |
18.37 |
11.18 |
951 |
At1g09530 |
Martinez-Garcia JF, Huq E, Quail PH. 2000
Direct targeting of light signals to a promoter element-bound transcription factor.
Science 288: 859-63. PubMed |
PIF3(3) (Target genes) |
bHLH |
Arabidopsis thaliana |
13.87 |
9.62 |
2,972 |
At1g09530 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
PIF4 (Target genes) |
bHLH |
Arabidopsis thaliana |
11.78 |
7.82 |
12,754 |
At2g43010 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
PIF5 (Target genes) |
bHLH |
Arabidopsis thaliana |
11.33 |
6.41 |
53,648 |
At5g59060 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ABF1 (Target genes) |
bZIP |
Arabidopsis thaliana |
13.16 |
10.94 |
2,419 |
At1g49720 |
Choi H, Hong J, Ha J, Kang J, Kim SY. 2000
ABFs, a family of ABA-responsive element binding factors.
J Biol Chem 275: 1723-30. PubMed |
bZIP60(1) (Target genes) |
bZIP |
Arabidopsis thaliana |
12.03 |
5.33 |
97,448 |
At1g42990 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
bZIP60(2) (Target genes) |
bZIP |
Arabidopsis thaliana |
12.68 |
5.82 |
64,220 |
At1g42990 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
bZIP910(1) (Target genes) |
bZIP |
Antirrhinum majus |
16.68 |
12.86 |
345 |
- |
Martinez-Garcia JF, Moyano E, Alcocer MJ, Martin C. 1998
Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.
Plant J 13: 489-505. PubMed |
bZIP910(2) (Target genes) |
bZIP |
Antirrhinum majus |
16.08 |
10.94 |
470 |
- |
Martinez-Garcia JF, Moyano E, Alcocer MJ, Martin C. 1998
Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.
Plant J 13: 489-505. PubMed |
bZIP911(1) (Target genes) |
bZIP |
Antirrhinum majus |
17.54 |
14.19 |
123 |
- |
Martinez-Garcia JF, Moyano E, Alcocer MJ, Martin C. 1998
Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.
Plant J 13: 489-505. PubMed |
bZIP911(2) (Target genes) |
bZIP |
Antirrhinum majus |
15.73 |
12.1 |
145 |
- |
Martinez-Garcia JF, Moyano E, Alcocer MJ, Martin C. 1998
Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.
Plant J 13: 489-505. PubMed |
O2 (Target genes) |
bZIP |
Zea mays |
10.35 |
4.83 |
173,637 |
- |
Izawa T, Foster R, Chua NH. 1993
Plant bZIP protein DNA binding specificity.
J Mol Biol 230: 1131-44. PubMed |
STF1 (Target genes) |
bZIP |
Glycine max |
12.43 |
7.74 |
9,318 |
- |
Song YH, Yoo CM, Hong AP, Kim SH, Jeong HJ, Shin SY, Kim HJ, Yun DJ, Lim CO, Bahk JD, Lee SY, Nagao RT, Key JL, Hong JC. 2008. DNA Binding Study Identifies C-box and Hybrid C/G-box or C/A-box Motifs as High-Affinity Binding Sites for STF1 and HY5 Proteins. Plant Physiol :(Epub ahead of print). PubMed |
TGA1 (Target genes) |
bZIP |
Arabidopsis thaliana |
10.84 |
5.81 |
53,463 |
At5g65210 |
Schindler U, Beckmann H, Cashmore AR. 1992
TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG.
Plant Cell 4: 1309-19. PubMed |
TGA1a (Target genes) |
bZIP |
Nicotiana tabacum |
10.45 |
5.21 |
142,030 |
- |
Izawa T, Foster R, Chua NH. 1993
Plant bZIP protein DNA binding specificity.
J Mol Biol 230: 1131-44. PubMed |
TGA2(1) (Target genes) |
bZIP |
Arabidopsis thaliana |
12.08 |
6.91 |
16,655 |
At5g06950 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
TGA2(2) (Target genes) |
bZIP |
Arabidopsis thaliana |
11.69 |
7.23 |
11,943 |
At5g06950 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
DAG2 (Target genes) |
C2C2(Zn) Dof |
Arabidopsis thaliana |
9.6 |
4.65 |
323,510 |
At5g65590 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
DOF2 (Target genes) |
C2C2(Zn) Dof |
Zea mays |
8.49 |
2.72 |
1,839,875 |
- |
Yanagisawa S, Schmidt RJ. 1999
Diversity and similarity among recognition sequences of Dof transcription factors.
Plant J 17: 209-14. PubMed |
DOF5.7(2) (Target genes) |
C2C2(Zn) Dof |
Arabidopsis thaliana |
10.88 |
5.44 |
61,646 |
At5g65590 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
YAB1 (Target genes) |
C2C2(Zn)YABBY |
Arabidopsis thaliana |
8.86 |
2.48 |
2,119,161 |
At2g45190 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
At4g35610 (Target genes) |
C2H2(Zn) |
Arabidopsis thaliana |
10.27 |
3.23 |
1,256,980 |
At4g35610 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ID1 (Target genes) |
C2H2(Zn) |
Zea mays |
11.02 |
5.71 |
156,606 |
- |
Kozaki A, Hake S, Colasanti J. 2004
The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties.
Nucleic Acids Res 32: 1710-20. PubMed |
ZAT14 (Target genes) |
C2H2(Zn) |
Arabidopsis thaliana |
10.73 |
3.85 |
451,507 |
At5g03510 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ZAT18 (Target genes) |
C2H2(Zn) |
Arabidopsis thaliana |
10.5 |
3.93 |
334,543 |
At3g53600 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ZAT2 (Target genes) |
C2H2(Zn) |
Arabidopsis thaliana |
11.52 |
4.69 |
354,120 |
At2g17180 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ZAT6 (Target genes) |
C2H2(Zn) |
Arabidopsis thaliana |
10.01 |
4.45 |
208,136 |
At5g04340 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
OsCBT (Target genes) |
CAMTA |
Oryza sativa |
16.34 |
9.98 |
886 |
- |
Choi MS, Kim MC, Yoo JH, Moon BC, Koo SC, Park BO, Lee JH, Koo YD, Han HJ, Lee SY, Chung WS, Lim CO, Cho MJ. 2005. Isolation of a calmodulin-binding transcription factor from rice (Oryza sativa L.). J Biol Chem 280: 40820-31. PubMed |
ARR10 (Target genes) |
GARP |
Arabidopsis thaliana |
12.04 |
5.23 |
153,271 |
At4g31920 |
Hosoda K, Imamura A, Katoh E, Hatta T, Tachiki M, Yamada H, Mizuno T, Yamazaki T. 2002
Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators.
Plant Cell 14: 2015-29. PubMed |
GLK1(1) (Target genes) |
GARP |
Arabidopsis thaliana |
10.43 |
4.34 |
357,978 |
At2g20570 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
GLK1(2) (Target genes) |
GARP |
Arabidopsis thaliana |
10.4 |
4.26 |
448,908 |
At2g20570 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
KAN4(1) (Target genes) |
GARP |
Arabidopsis thaliana |
11.11 |
6.3 |
31,168 |
At5g42630 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
KAN4(2) (Target genes) |
GARP |
Arabidopsis thaliana |
11.18 |
5.83 |
51,683 |
At5g42630 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ARR11(1) (Target genes) |
GARP/ARR-B |
Arabidopsis thaliana |
11.16 |
6.11 |
48,623 |
At1g67710 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ARR11(3) (Target genes) |
GARP/ARR-B |
Arabidopsis thaliana |
9.14 |
3.08 |
1,366,503 |
At1g67710 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ARR14(1) (Target genes) |
GARP/ARR-B |
Arabidopsis thaliana |
10.99 |
6.35 |
29,511 |
At2g01760 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ARR14(2) (Target genes) |
GARP/ARR-B |
Arabidopsis thaliana |
10.87 |
3.06 |
1,326,246 |
At2g01760 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ARR14(3) (Target genes) |
GARP/ARR-B |
Arabidopsis thaliana |
11.2 |
6.15 |
70,886 |
At2g01760 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
AGP1 (Target genes) |
GATA |
Nicotiana tabacum |
10.11 |
5.45 |
108,176 |
- |
Sugimoto K, Takeda S, Hirochika H. 2003
Transcriptional activation mediated by binding of a plant GATA-type zinc finger protein AGP1 to the AG-motif (AGATCCAA) of the wound-inducible Myb gene NtMyb2.
Plant J 36: 550-64. PubMed |
WOX13(1) (Target genes) |
HD-HOX |
Arabidopsis thaliana |
9.3 |
4.73 |
255,250 |
At4g35550 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ZmHOX2a(1) (Target genes) |
HD-HOX |
Zea mays |
7.33 |
4.29 |
755,085 |
- |
Kirch T, Bitter S, Kisters-Woike B, Werr W. 1998. The two homeodomains of the ZmHox2a gene from maize originated as an internal gene duplication and have evolved different target site specificities. Nucleic Acids Res 26: 4714-20. PubMed |
ZmHOX2a(2) (Target genes) |
HD-HOX |
Zea mays |
7.77 |
4.44 |
495,363 |
- |
Kirch T, Bitter S, Kisters-Woike B, Werr W. 1998. The two homeodomains of the ZmHox2a gene from maize originated as an internal gene duplication and have evolved different target site specificities. Nucleic Acids Res 26: 4714-20. PubMed |
HVH21 (Target genes) |
HD-KNOTTED |
Hordeum vulgare |
10.69 |
3.82 |
526,536 |
- |
Krusell L, Rasmussen I, Gausing K. 1997
DNA binding sites recognised in vitro by a knotted class 1 homeodomain protein encoded by the hooded gene, k, in barley (Hordeum vulgare).
FEBS Lett 408: 25-9. PubMed |
ALFIN1 (Target genes) |
HD-PHD |
Medicago sativa |
11.23 |
4.16 |
545,903 |
- |
Bastola DR, Pethe VV, Winicov I. 1998
Alfin1, a novel zinc-finger protein in alfalfa roots that binds to promoter elements in the salt-inducible MsPRP2 gene.
Plant Mol Biol 38: 1123-35. PubMed |
ATHB1 (Target genes) |
HD-ZIP |
Arabidopsis thaliana |
9.98 |
5.77 |
66,445 |
At3g01470 |
Sessa G, Morelli G, Ruberti I. 1993
The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities.
EMBO J 12: 3507-17. PubMed |
ATHB12 (Target genes) |
HD-ZIP |
Arabidopsis thaliana |
9.8 |
3.91 |
559,739 |
At3g61890 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ATHB5 (Target genes) |
HD-ZIP |
Arabidopsis thaliana |
13.59 |
7.99 |
7,114 |
At5g65310 |
Johannesson H, Wang Y, Engstrom P. 2001. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol Biol. 45:63-73.
PubMed |
ATHB51 (Target genes) |
HD-ZIP |
Arabidopsis thaliana |
9.54 |
5.06 |
139,348 |
At5g03790 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ATHB9 (Target genes) |
HD-ZIP |
Arabidopsis thaliana |
17.83 |
10.8 |
303 |
At1g30490 |
Sessa G, Steindler C, Morelli G, Ruberti I. 1998
The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteins.
Plant Mol Biol 38: 609-22. PubMed |
HAHB4 (Target genes) |
HD-ZIP |
Helianthus anuus |
9.64 |
5.32 |
90,813 |
- |
Palena CM, Gonzalez DH, Chan RL. 1999
A monomer-dimer equilibrium modulates the interaction of the sunflower homeodomain leucine-zipper protein Hahb-4 with DNA.
Biochem J 341: 81-7. PubMed |
ICU4 (Target genes) |
HD-ZIP |
Arabidopsis thaliana |
9.09 |
3.32 |
823,995 |
At1g52150 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
HSFB2a(1) (Target genes) |
HSF |
Arabidopsis thaliana |
10.67 |
5.24 |
144,389 |
At5g62020 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
HSFB2a(2) (Target genes) |
HSF |
Arabidopsis thaliana |
9.7 |
4.2 |
441,163 |
At5g62020 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
HSFC1(1) (Target genes) |
HSF |
Arabidopsis thaliana |
10.92 |
6.6 |
39,964 |
At3g24520 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
HSFC1(2) (Target genes) |
HSF |
Arabidopsis thaliana |
11.41 |
5.57 |
138,544 |
At3g24520 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
LBD16 (Target genes) |
LOB/AS2 |
Arabidopsis thaliana |
9.02 |
3.48 |
748,929 |
At2g42430 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
AG (Target genes) |
MADS |
Arabidopsis thaliana |
14.56 |
6.32 |
46,217 |
At4g18960 |
Huang H, Mizukami Y, Hu Y, Ma H. 1993
Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS.
Nucleic Acids Res 21: 4769-76. PubMed |
AGL1 (Target genes) |
MADS |
Arabidopsis thaliana |
14.15 |
5.44 |
107,987 |
At3g58780 |
Huang H, Tudor M, Su T, Zhang Y, Hu Y, Ma H. 1996. DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation. Plant Cell 8: 81-94. PubMed |
AGL15 (Target genes) |
MADS |
Arabidopsis thaliana |
12.09 |
4.48 |
262,825 |
At5g13790 |
Tang W, Perry SE. 2003
Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.
J Biol Chem 278: 28154-9. PubMed |
AGL2 (Target genes) |
MADS |
Arabidopsis thaliana |
13.9 |
6.18 |
55,361 |
At5g15800 |
Huang H, Tudor M, Su T, Zhang Y, Hu Y, Ma H. 1996. DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation. Plant Cell 8: 81-94. PubMed |
AGL3 (Target genes) |
MADS |
Arabidopsis thaliana |
13.32 |
5.79 |
73,285 |
At2g03710 |
Huang H, Tudor M, Weiss CA, Hu Y, Ma H. 1995
The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein.
Plant Mol Biol 28: 549-67. PubMed |
AtMYB15 (Target genes) |
MYB |
Arabidopsis thaliana |
17.49 |
11.85 |
209 |
At3g23250 |
Romero I, Fuertes A, Benito MJ, Malpica JM, Leyva A, Paz-Ares J. 1998
More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana.
Plant J 14: 273-84. PubMed |
AtMYB61 (Target genes) |
MYB |
Arabidopsis thaliana |
11.85 |
5.65 |
216,623 |
At1g09540 |
Prouse MB, Campbell MM. 2013. Interactions between the R2R3-MYB Transcription Factor, AtMYB61, and Target DNA Binding Sites. PLoS One. 8(5):e65132. PubMed |
AtMYB77 (Target genes) |
MYB |
Arabidopsis thaliana |
13.11 |
7.25 |
17,825 |
At3g50060 |
Romero I, Fuertes A, Benito MJ, Malpica JM, Leyva A, Paz-Ares J. 1998
More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana.
Plant J 14: 273-84. PubMed |
AtMYB84 (Target genes) |
MYB |
Arabidopsis thaliana |
17.8 |
12.43 |
231 |
At3g49690 |
Romero I, Fuertes A, Benito MJ, Malpica JM, Leyva A, Paz-Ares J. 1998
More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana.
Plant J 14: 273-84. PubMed |
CCA1(1) (Target genes) |
MYB |
Arabidopsis thaliana |
10.46 |
6.44 |
39,020 |
At2g46830 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
CCA1(2) (Target genes) |
MYB |
Arabidopsis thaliana |
9.09 |
4.09 |
332,599 |
At2g46830 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
CDC5 (Target genes) |
MYB |
Arabidopsis thaliana |
13.93 |
7.47 |
11,561 |
At1g09770 |
Hirayama T, Shinozaki K. 1996. A cdc5+ homolog of a higher plant, Arabidopsis thaliana. Proc Natl Acad Sci U S A. 93:13371-6.
PubMed |
GAMYB (Target genes) |
MYB |
Hordeum vulgare |
9.62 |
4.64 |
315,583 |
- |
Gubler F, Raventos D, Keys M, Watts R, Mundy J, Jacobsen JV. 1999. Target genes and regulatory domains of the GAMYB transcriptional activator in cereal aleurone. Plant J. 17:1-9.
PubMed |
MYB.PH3(1) (Target genes) |
MYB |
Petunia hybrida |
13.34 |
7.65 |
8,525 |
- |
Solano R, Nieto C, Avila J, Canas L, Diaz I, Paz-Ares J. 1995. Dual DNA binding specificity of a petal epidermis-specific MYB transcription factor (MYB.Ph3) from Petunia hybrida. EMBO J. 14:1773-84.
PubMed |
MYB.PH3(2) (Target genes) |
MYB |
Petunia hybrida |
12.96 |
8 |
7,633 |
- |
Solano R, Nieto C, Avila J, Canas L, Diaz I, Paz-Ares J. 1995
Dual DNA binding specificity of a petal epidermis-specific MYB transcription factor (MYB.Ph3) from Petunia hybrida.
EMBO J 14: 1773-84. PubMed |
MYB111(1) (Target genes) |
MYB |
Arabidopsis thaliana |
11.35 |
5.95 |
59,274 |
At5g49330 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
MYB111(2) (Target genes) |
MYB |
Arabidopsis thaliana |
12.23 |
6.67 |
42,572 |
At5g49330 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
MYB46(1) (Target genes) |
MYB |
Arabidopsis thaliana |
7.66 |
3.98 |
379,287 |
At5g12870 |
Zhong R, Ye ZH. 2012. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol. 53:368-80. PubMed |
MYB46(2) (Target genes) |
MYB |
Arabidopsis thaliana |
10.58 |
6.15 |
53,232 |
At1g12870 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
MYB46(3) (Target genes) |
MYB |
Arabidopsis thaliana |
10.94 |
4.14 |
583,790 |
At5g12670 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
MYB52(1) (Target genes) |
MYB |
Arabidopsis thaliana |
10.12 |
3.7 |
495,867 |
At1g17950 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
MYB52(2) (Target genes) |
MYB |
Arabidopsis thaliana |
11.47 |
5.2 |
127,344 |
At1g17950 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
MYB55(1) (Target genes) |
MYB |
Arabidopsis thaliana |
12.1 |
6.96 |
22,537 |
At4g01680 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
MYB55(2) (Target genes) |
MYB |
Arabidopsis thaliana |
12.9 |
6.36 |
71,146 |
At4g01680 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
MYB59 (Target genes) |
MYB |
Arabidopsis thaliana |
10.18 |
4.74 |
179,807 |
At5g59780 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
MYB83 (Target genes) |
MYB |
Arabidopsis thaliana |
7.66 |
3.98 |
379,287 |
At3g08500 |
Zhong R, Ye ZH. 2012. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol. 53:368-80. PubMed |
P (Target genes) |
MYB |
Zea mays |
10.19 |
4.94 |
209,954 |
- |
Grotewold E, Drummond BJ, Bowen B, Peterson T. 1994. The myb-homologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosynthetic gene subset. Cell. 76:543-53.
PubMed |
RVE1(1) (Target genes) |
MYB |
Arabidopsis thaliana |
10.28 |
5.95 |
67,323 |
At5g17300 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
TaMYB80 (Target genes) |
MYB |
Triticum aestivum |
11.99 |
6.45 |
25,814 |
- |
Xue GP. 2005. A CELD-fusion method for rapid determination of the DNA-binding sequence specificity of novel plant DNA-binding proteins. Plant J 41: 638-49. PubMed |
ANAC46 (Target genes) |
NAC |
Arabidopsis thaliana |
10.26 |
2.92 |
1,291,415 |
At3g04060 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ANAC55(1) (Target genes) |
NAC |
Arabidopsis thaliana |
10.55 |
5.25 |
76,218 |
At3g155500 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ANAC55(2) (Target genes) |
NAC |
Arabidopsis thaliana |
9.28 |
0 |
456,376 |
At3g15500 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ANAC58 (Target genes) |
NAC |
Arabidopsis thaliana |
9.74 |
2.9 |
1,389,524 |
At3g18400 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ANAC81 (Target genes) |
NAC |
Arabidopsis thaliana |
21.7 |
9.67 |
23,681 |
At5g08790 |
Wang X, Culver JN. 2012. DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for
degradation by Tobacco mosaic virus. BMC Plant Biol. 12:157. PubMed |
TaNAC69(1) (Target genes) |
NAC |
Triticum aestivum |
21.96 |
12.53 |
107 |
- |
Xue GP, Bower NI, McIntyre CL, Riding GA, Kazan K, Shorter R. 2006. TaNAC69 from the NAC superfamily of transcription factors is up-regulated by abiotic stresses in wheat and recognises two consensus DNA-binding sequences. Funct Plant Biol 33: 43-57. |
TaNAC69(2) (Target genes) |
NAC |
Triticum aestivum |
19.93 |
6.05 |
30,812 |
- |
Xue GP, Bower NI, McIntyre CL, Riding GA, Kazan K, Shorter R. 2006. TaNAC69 from the NAC superfamily of transcription factors is up-regulated by abiotic stresses in wheat and recognises two consensus DNA-binding sequences. Funct Plant Biol 33: 43-57. |
AtSPL3 (Target genes) |
SBP |
Arabidopsis thaliana |
11.69 |
5.09 |
74,660 |
At2g33810 |
Birkenbihl RP, Jach G, Saedler H, Huijser P. 2005. Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains. J Mol Biol 352: 585-96. PubMed |
AtSPL8 (Target genes) |
SBP |
Arabidopsis thaliana |
10.26 |
4.48 |
146,672 |
At1g02065 |
Birkenbihl RP, Jach G, Saedler H, Huijser P. 2005. Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains. J Mol Biol 352: 585-96. PubMed |
SPL1(1) (Target genes) |
SBP |
Arabidopsis thaliana |
13.18 |
8.51 |
2,634 |
At2g47070 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
SPL1(2) (Target genes) |
SBP |
Arabidopsis thaliana |
13.34 |
8.57 |
2,385 |
At2g47070 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
SPL14 (Target genes) |
SBP |
Arabidopsis thaliana |
17.62 |
7.98 |
5,126 |
At1g20980 |
Liang X, Nazarenus TJ, Stone JM. 2008. Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance. Biochemistry 47: 3645-53. PubMed |
SPL7 (Target genes) |
SBP |
Arabidopsis thaliana |
11.36 |
4.61 |
136,136 |
At5g18830 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
STY1(1) (Target genes) |
SRS |
Arabidopsis thaliana |
13.25 |
8.04 |
5,681 |
At3g51060 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
STY1(2) (Target genes) |
SRS |
Arabidopsis thaliana |
11.98 |
6.63 |
27,311 |
At3g51060 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
PCF2 (Target genes) |
TCP |
Oryza sativa |
12.22 |
6.53 |
37,322 |
- |
Kosugi S, Ohashi Y. 2002
DNA binding and dimerization specificity and potential targets for the TCP protein family.
Plant J 30: 337-48. PubMed |
PCF5 (Target genes) |
TCP |
Oryza sativa |
12.26 |
7.48 |
14,048 |
- |
Kosugi S, Ohashi Y. 2002
DNA binding and dimerization specificity and potential targets for the TCP protein family.
Plant J 30: 337-48. PubMed |
TCP11(1) (Target genes) |
TCP |
Arabidopsis thaliana |
14.85 |
9.16 |
2,115 |
At2g37000 |
Viola IL, Uberti Manassero NG, Ripoll R, Gonzalez DH. 2011. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA-binding properties due to the presence of a threonine residue at position 15 of the TCP domain. Biochem J. 435(1):143-55. PubMed |
TCP11(2) (Target genes) |
TCP |
Arabidopsis thaliana |
14.1 |
9.78 |
689 |
At2g37000 |
Viola IL, Uberti Manassero NG, Ripoll R, Gonzalez DH. 2011. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA-binding properties due to the presence of a threonine residue at position 15 of the TCP domain. Biochem J. 435(1):143-55. PubMed |
TCP15(1) (Target genes) |
TCP |
Arabidopsis thaliana |
13.25 |
8.54 |
4,383 |
At1g69690 |
Viola IL, Uberti Manassero NG, Ripoll R, Gonzalez DH. 2011. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA-binding properties due to the presence of a threonine residue at position 15 of the TCP domain. Biochem J. 435(1):143-55. PubMed |
TCP15(2) (Target genes) |
TCP |
Arabidopsis thaliana |
15.1 |
10.16 |
1,450 |
At1g69690 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
TCP16(1) (Target genes) |
TCP |
Arabidopsis thaliana |
13.31 |
8.66 |
3,826 |
At3g45150 |
Viola IL, Reinheimer R, Ripoll R, Manassero NG, Gonzalez DH. 2012. Determinants of the DNA binding specificity of class I and class II TCP transcription factors. J Biol Chem. 287:347-56. PubMed |
TCP16(2) (Target genes) |
TCP |
Arabidopsis thaliana |
13.67 |
9.37 |
1,984 |
At1g69690 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
TCP20 (Target genes) |
TCP |
Arabidopsis thaliana |
13.19 |
8.28 |
6,844 |
At3g27010 |
Viola IL, Uberti Manassero NG, Ripoll R, Gonzalez DH. 2011. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA-binding properties due to the presence of a threonine residue at position 15 of the TCP domain. Biochem J. 435(1):143-55. PubMed |
TCP23 (Target genes) |
TCP |
Arabidopsis thaliana |
15.05 |
10.23 |
1,011 |
At1g35560 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
At5g28300 (Target genes) |
Trihelix |
Arabidopsis thaliana |
10.64 |
5.11 |
104,610 |
At5g28300 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
GT1 (Target genes) |
Trihelix |
Nicotiana tabacum |
8.94 |
2.72 |
1,439,344 |
- |
Ouwerkerk PB, Trimborn TO, Hilliou F, Memelink J. 1999
Nuclear factors GT-1 and 3AF1 interact with multiple sequences within the promoter of the Tdc gene from Madagascar periwinkle: GT-1 is involved in UV light-induced expression.
Mol Gen Genet 261: 610-22. PubMed |
WRKY12 (Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
12.11 |
6 |
63,260 |
At2g44745 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
WRKY18(1) (Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
11.77 |
6.28 |
55,907 |
At4g31800 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
WRKY38(1) (Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
11.82 |
5.93 |
63,374 |
At5g22570 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
WRKY45 (Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
12.3 |
7.38 |
15,934 |
At3g01970 |
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 111: 2367-72. PubMed |
ZAP1 (Target genes) |
WRKY(Zn) |
Arabidopsis thaliana |
12.26 |
8.48 |
4,300 |
At2g04880 |
de Pater S, Greco V, Pham K, Memelink J, Kijne J. 1996
Characterization of a zinc-dependent transcriptional activator from Arabidopsis.
Nucleic Acids Res 24: 4624-31. PubMed |
|
|
|
Total Numbers: |
Factors: |
121 |
Families: |
28 |
Binding sites: |
34,086,656 |
|
|